HHsearch alignment for GI: 254780561 and conserved domain: pfam04069

>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=95.55  E-value=0.14  Score=27.35  Aligned_cols=226  Identities=12%  Similarity=0.085  Sum_probs=99.2

Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEE-CCCHHHHHHHHHHHCCCC
Q ss_conf             8599997887785122338899999988488799997288689997887531266410110-133378999887521261
Q gi|254780561|r   30 PVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVALLNKLRMEGENSAADIVL-GFDNNLIDLARKTGLFAK  108 (338)
Q Consensus        30 ~~l~v~~~~~~~~~~~~~~~i~~~Fek~~gikV~~~~~~~~~~~~~~~~a~~~~~~~Dv~~-~~~~~~~~~~~~~~l~~~  108 (338)
T Consensus         1 ktI~ig~~-~w-~e~~i~a~i~~~~Le~~G~~V~~~~~~~~~~~~~al~~----G~iDi~~~~w~~~~~~~~~~-~~~~~   73 (256)
T pfam04069         1 KTIVIGSK-NW-TEQEILANIAAQLLEALGYVVELVGLGSTAVLFAALAS----GDIDLYPEEWTGTTYEAYKK-AVEEK   73 (256)
T ss_pred             CEEEEECC-CC-CHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHC----CCCCEEEHHCCCCHHHHHHH-HHHCC
T ss_conf             92999268-86-28999999999999976981698547870899999976----99758633306625799998-75146


Q ss_pred             CCCCHHHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCC-CCCCCHHHHCCCCC-----CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf             3677000210001243211532431000110011124-58764565212000-----68289850476530367899998
Q gi|254780561|r  109 SNIDASQLKLPIKWDDDIFVPYDYGYLAFIYDKRQIT-QPPKNFDELINSTK-----PWKIIYQDPRTSTLGLGLLLWIQ  182 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~p~s~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  182 (338)
T Consensus        74 ~~~--------~~~----~~~~~~~~~g~~Vp~~~a~~~~i~si~dL~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~~  139 (256)
T pfam04069        74 LGL--------LVL----GPLGAGNTYGLAVPKYVAEKPGIKSISDLAKPADDELGFKGEFIGRPDGWGCT--RSTEGLL  139 (256)
T ss_pred             CCE--------EEC----CCCCCCCEEEEEECHHHHHHCCCCCHHHHHCCCCCCCCCCCCEECCCCCCCCC--HHHHHHH
T ss_conf             873--------861----35777875899985888835699879997274210248886553278885400--6789999


Q ss_pred             HHCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCEEEEEEEEEEE--
Q ss_conf             717731378987776288468308478988862258656999504499999850799737883169808888642433--
Q gi|254780561|r  183 KIYGDNSAQVWKKIATKTATVTKGWTESYGFFLKGESDFVLSYSTSPGFYLLNYGQDDYVAALFSEGHYLQIEVAAQL--  260 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~~i~--  260 (338)
T Consensus       140 ~~yGl~~~~~~------~~s~~~~~a~~~~A~~~g~~~v~~~w~p~~~~~~~-----dl~~L~Dp~~~~~~~~~v~~v~~  208 (256)
T pfam04069       140 KAYGLDKYELV------EGSEAAMDALLYAAIKRGEPDVVYAWTPDWMIKKY-----DLVVLEDPKGLFPPAYNVVPVVR  208 (256)
T ss_pred             HHCCCCCEEEC------CCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHC-----CEEECCCCCCCCCCCCEEEEEEC
T ss_conf             86397640123------58555459999999984998899963761655427-----96993688645797655875210


Q ss_pred             CC--CCCHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             78--9998999999999639999999885
Q gi|254780561|r  261 VR--SKQPQLAQEFMQFMISPSFQRILPT  287 (338)
Q Consensus       261 k~--a~n~~~A~~Fi~flls~e~Q~~~a~  287 (338)
T Consensus       209 ~~~~~~~P~~~~~l~~~~~t~~~~~~l~~  237 (256)
T pfam04069       209 KGFAEKHPEVAAFLNKLSLDTEDLNELNA  237 (256)
T ss_pred             HHHHHHCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             46777798999999867899999999999