HHsearch alignment for GI: 254780561 and conserved domain: pfam04069
>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=95.55 E-value=0.14 Score=27.35 Aligned_cols=226 Identities=12% Similarity=0.085 Sum_probs=99.2
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEE-CCCHHHHHHHHHHHCCCC
Q ss_conf 8599997887785122338899999988488799997288689997887531266410110-133378999887521261
Q gi|254780561|r 30 PVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVALLNKLRMEGENSAADIVL-GFDNNLIDLARKTGLFAK 108 (338)
Q Consensus 30 ~~l~v~~~~~~~~~~~~~~~i~~~Fek~~gikV~~~~~~~~~~~~~~~~a~~~~~~~Dv~~-~~~~~~~~~~~~~~l~~~ 108 (338)
T Consensus 1 ktI~ig~~-~w-~e~~i~a~i~~~~Le~~G~~V~~~~~~~~~~~~~al~~----G~iDi~~~~w~~~~~~~~~~-~~~~~ 73 (256)
T pfam04069 1 KTIVIGSK-NW-TEQEILANIAAQLLEALGYVVELVGLGSTAVLFAALAS----GDIDLYPEEWTGTTYEAYKK-AVEEK 73 (256)
T ss_pred CEEEEECC-CC-CHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHC----CCCCEEEHHCCCCHHHHHHH-HHHCC
T ss_conf 92999268-86-28999999999999976981698547870899999976----99758633306625799998-75146
Q ss_pred CCCCHHHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCC-CCCCCHHHHCCCCC-----CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 3677000210001243211532431000110011124-58764565212000-----68289850476530367899998
Q gi|254780561|r 109 SNIDASQLKLPIKWDDDIFVPYDYGYLAFIYDKRQIT-QPPKNFDELINSTK-----PWKIIYQDPRTSTLGLGLLLWIQ 182 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~p~s~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 182 (338)
T Consensus 74 ~~~--------~~~----~~~~~~~~~g~~Vp~~~a~~~~i~si~dL~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~~ 139 (256)
T pfam04069 74 LGL--------LVL----GPLGAGNTYGLAVPKYVAEKPGIKSISDLAKPADDELGFKGEFIGRPDGWGCT--RSTEGLL 139 (256)
T ss_pred CCE--------EEC----CCCCCCCEEEEEECHHHHHHCCCCCHHHHHCCCCCCCCCCCCEECCCCCCCCC--HHHHHHH
T ss_conf 873--------861----35777875899985888835699879997274210248886553278885400--6789999
Q ss_pred HHCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCEEEEEEEEEEE--
Q ss_conf 717731378987776288468308478988862258656999504499999850799737883169808888642433--
Q gi|254780561|r 183 KIYGDNSAQVWKKIATKTATVTKGWTESYGFFLKGESDFVLSYSTSPGFYLLNYGQDDYVAALFSEGHYLQIEVAAQL-- 260 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~~i~-- 260 (338)
T Consensus 140 ~~yGl~~~~~~------~~s~~~~~a~~~~A~~~g~~~v~~~w~p~~~~~~~-----dl~~L~Dp~~~~~~~~~v~~v~~ 208 (256)
T pfam04069 140 KAYGLDKYELV------EGSEAAMDALLYAAIKRGEPDVVYAWTPDWMIKKY-----DLVVLEDPKGLFPPAYNVVPVVR 208 (256)
T ss_pred HHCCCCCEEEC------CCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHC-----CEEECCCCCCCCCCCCEEEEEEC
T ss_conf 86397640123------58555459999999984998899963761655427-----96993688645797655875210
Q ss_pred CC--CCCHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 78--9998999999999639999999885
Q gi|254780561|r 261 VR--SKQPQLAQEFMQFMISPSFQRILPT 287 (338)
Q Consensus 261 k~--a~n~~~A~~Fi~flls~e~Q~~~a~ 287 (338)
T Consensus 209 ~~~~~~~P~~~~~l~~~~~t~~~~~~l~~ 237 (256)
T pfam04069 209 KGFAEKHPEVAAFLNKLSLDTEDLNELNA 237 (256)
T ss_pred HHHHHHCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 46777798999999867899999999999