RPSBLAST alignment for GI: 254780561 and conserved domain: COG0687
>gnl|CDD|31031 COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]. Length = 363
Score = 66.3 bits (161), Expect = 1e-11
Identities = 57/366 (15%), Positives = 111/366 (30%), Gaps = 36/366 (9%)
Query: 1 MKKFARIVVGIMMITGVISYCTLDGLPAKP-VLTVYTYNSFVADEGAGPKIKQAFERKCN 59
MKK +R + + + A+ L VY + ++ + + FE++
Sbjct: 2 MKKLSRRSFLALAALALAALAGAAAAAAEGKTLNVYNWGGYIDPA-----LLKPFEKETG 56
Query: 60 CELKLIGLSDGVALLNKLRMEGENSAADIVLGFDNNLIDLARKTGLFAK---------SN 110
++ +L KL+ G D+V+ + K GL N
Sbjct: 57 IKVVYDTFDSNEEMLAKLKAGGGG--YDVVV-PSGYFVARLIKEGLLQPLDKSKLPNWKN 113
Query: 111 IDASQLKLPIKWDDDIF-VPYDYGYLAFIYDKRQIT--QPPKNFDELIN-----STKPWK 162
+D L P + + VPY +G Y+ ++ PP ++ +L + K
Sbjct: 114 LDPEFLNPPKFDPGNKYSVPYFWGTTGIAYNTDKVKDAPPPTSWADLFDPEKFPGLKGKG 173
Query: 163 IIYQDPRTSTLGLGLLLWIQKIYGDNSAQVWKKIAT--KTATVTKGWTESYGF---FLKG 217
+ D G L L + + + K K V W + + G
Sbjct: 174 VALLDDDREVFGAALALLGKSPNTTDPEDLKKAFDLLDKLKPVNVYWFDGSQYVQLLANG 233
Query: 218 ESDFVLSYSTSPGFYLLNYGQDDYVAALFSEGHYLQIEVAAQLVRSKQPQLAQEFMQFMI 277
E + +S + EG L + A +K A +F+ F++
Sbjct: 234 EVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILWFDNLAIPKGAKNVDAAYKFINFLL 293
Query: 278 SPSFQRILPTTNWMYPVVDISMPDVYQAIR-----IPQKSLRFNAEETTRYRNQWISSWQ 332
P L P + + + I+ P + + + +
Sbjct: 294 DPEVAAKLAEFVGYAPPNKAARKLLPKEIKDDPAIYPTAEILKKLFGQKDLGPEALRLYT 353
Query: 333 NAVSRL 338
A +
Sbjct: 354 KAWQEI 359