BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780561|ref|YP_003064974.1| thiamine transporter substrate
binding subunit [Candidatus Liberibacter asiaticus str. psy62]
         (338 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780561|ref|YP_003064974.1| thiamine transporter substrate binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 338

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/338 (100%), Positives = 338/338 (100%)

Query: 1   MKKFARIVVGIMMITGVISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNC 60
           MKKFARIVVGIMMITGVISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNC
Sbjct: 1   MKKFARIVVGIMMITGVISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNC 60

Query: 61  ELKLIGLSDGVALLNKLRMEGENSAADIVLGFDNNLIDLARKTGLFAKSNIDASQLKLPI 120
           ELKLIGLSDGVALLNKLRMEGENSAADIVLGFDNNLIDLARKTGLFAKSNIDASQLKLPI
Sbjct: 61  ELKLIGLSDGVALLNKLRMEGENSAADIVLGFDNNLIDLARKTGLFAKSNIDASQLKLPI 120

Query: 121 KWDDDIFVPYDYGYLAFIYDKRQITQPPKNFDELINSTKPWKIIYQDPRTSTLGLGLLLW 180
           KWDDDIFVPYDYGYLAFIYDKRQITQPPKNFDELINSTKPWKIIYQDPRTSTLGLGLLLW
Sbjct: 121 KWDDDIFVPYDYGYLAFIYDKRQITQPPKNFDELINSTKPWKIIYQDPRTSTLGLGLLLW 180

Query: 181 IQKIYGDNSAQVWKKIATKTATVTKGWTESYGFFLKGESDFVLSYSTSPGFYLLNYGQDD 240
           IQKIYGDNSAQVWKKIATKTATVTKGWTESYGFFLKGESDFVLSYSTSPGFYLLNYGQDD
Sbjct: 181 IQKIYGDNSAQVWKKIATKTATVTKGWTESYGFFLKGESDFVLSYSTSPGFYLLNYGQDD 240

Query: 241 YVAALFSEGHYLQIEVAAQLVRSKQPQLAQEFMQFMISPSFQRILPTTNWMYPVVDISMP 300
           YVAALFSEGHYLQIEVAAQLVRSKQPQLAQEFMQFMISPSFQRILPTTNWMYPVVDISMP
Sbjct: 241 YVAALFSEGHYLQIEVAAQLVRSKQPQLAQEFMQFMISPSFQRILPTTNWMYPVVDISMP 300

Query: 301 DVYQAIRIPQKSLRFNAEETTRYRNQWISSWQNAVSRL 338
           DVYQAIRIPQKSLRFNAEETTRYRNQWISSWQNAVSRL
Sbjct: 301 DVYQAIRIPQKSLRFNAEETTRYRNQWISSWQNAVSRL 338


>gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 280

 Score = 27.3 bits (59), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 9/40 (22%), Positives = 23/40 (57%)

Query: 258 AQLVRSKQPQLAQEFMQFMISPSFQRILPTTNWMYPVVDI 297
           A +V+S    L   F+ F++  + + +LP  +W + ++++
Sbjct: 120 APIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEM 159


>gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 343

 Score = 26.6 bits (57), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 151 FDELINSTKPWKIIYQDPRTSTLGLGLLLWIQKIYGDNSAQV 192
            D+  N+   WKI+Y D  T  +   L++WI     D++ + 
Sbjct: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64


>gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 210

 Score = 26.2 bits (56), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 18  ISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVA 72
           +  C + GLP   V+        V D+G   K KQ  E     +LK+I + D +A
Sbjct: 154 VDLCKITGLPPIAVIC-----ELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIA 203


>gi|254780753|ref|YP_003065166.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 355

 Score = 22.7 bits (47), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 290 WMYPVVDISMPDVYQAIRIPQKSLRFNAEETTRYRNQWISSWQNAV 335
           W+YPVVD S+      I I +   R +    +    Q +++  +AV
Sbjct: 210 WVYPVVDDSIE-----IEISESDCRIDTYRASGAGGQHVNTTDSAV 250


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,882
Number of Sequences: 1233
Number of extensions: 8901
Number of successful extensions: 15
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 338
length of database: 328,796
effective HSP length: 74
effective length of query: 264
effective length of database: 237,554
effective search space: 62714256
effective search space used: 62714256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)