Query gi|254780562|ref|YP_003064975.1| hypothetical protein CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 77
No_of_seqs 106 out of 1289
Neff 5.8
Searched_HMMs 33803
Date Wed Jun 1 16:11:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780562.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2id1_A Hypothetical protein; 99.7 7.9E-18 2.3E-22 117.3 7.8 62 15-77 2-63 (130)
2 >2o5a_A BH1328 protein; BHR21, 99.7 4.5E-17 1.3E-21 113.2 8.6 61 16-77 3-63 (125)
3 >2qv2_A OCRL, inositol polypho 55.3 4.4 0.00013 21.2 0.9 24 30-57 21-44 (49)
4 >3dgz_A Thioredoxin reductase 42.4 1.4 4.2E-05 23.9 -3.3 24 44-67 144-167 (197)
5 >2eq6_A Pyruvate dehydrogenase 38.6 15 0.00044 18.3 1.5 52 15-67 90-151 (179)
6 >2rcf_A Unidentified carboxyso 35.0 37 0.0011 16.1 3.6 32 30-63 31-62 (91)
7 >2hd3_A Ethanolamine utilizati 34.7 22 0.00064 17.4 1.8 33 29-63 35-67 (103)
8 >2qw7_A Carbon dioxide concent 34.2 20 0.0006 17.6 1.6 32 29-62 35-66 (82)
9 >1nf2_A Phosphatase; structura 33.2 40 0.0012 16.0 3.2 20 50-69 36-55 (163)
10 >1s2o_A SPP, sucrose-phosphata 31.7 42 0.0013 15.8 3.2 20 50-69 36-55 (173)
11 >2zos_A MPGP, mannosyl-3-phosp 31.2 39 0.0012 16.0 2.7 20 50-69 35-54 (165)
12 >1dqu_A Isocitrate lyase; beta 30.1 21 0.00061 17.5 1.1 26 45-70 19-44 (52)
13 >3dnp_A Stress response protei 26.9 37 0.0011 16.2 1.9 20 50-69 41-60 (175)
14 >2zbw_A Thioredoxin reductase; 24.0 36 0.0011 16.2 1.4 31 32-62 94-125 (178)
No 1
>>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Chromobacterium violaceum atcc 12472} (A:)
Probab=99.73 E-value=7.9e-18 Score=117.33 Aligned_cols=62 Identities=18% Similarity=0.411 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999984368634989804888720008788951886899999999999997439
Q gi|254780562|r 15 HLDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77 (77)
Q Consensus 15 ~~~~~l~~i~~~l~dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~Aia~~v~~~lk~~n 77 (77)
++.++++.++++|+++||+||++||+++ .|+++||||||||+|.||++||+++|.+.+|+++
T Consensus 2 ~~~~l~~~i~~~l~~~ka~DI~vidv~~-~~~~~dy~VI~T~~S~rh~~aia~~i~~~~k~~~ 63 (130)
T 2id1_A 2 EIQEISKLAIEALEDIKGKDIIELDTSK-LTSLFQRXIVATGDSNRQVKALANSVQVKLKEAG 63 (130)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEEEGGG-TCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCHHHEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 8899999999999973888639997889-8624316799775467999999999999999839
No 2
>>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} (A:)
Probab=99.70 E-value=4.5e-17 Score=113.23 Aligned_cols=61 Identities=25% Similarity=0.369 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999984368634989804888720008788951886899999999999997439
Q gi|254780562|r 16 LDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77 (77)
Q Consensus 16 ~~~~l~~i~~~l~dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~Aia~~v~~~lk~~n 77 (77)
+.++++.++++|+|+||+||++||+++ .|+++||||||||+|.||++||++++.+.+|+.+
T Consensus 3 ~~e~~~~i~~~l~ekka~DI~vldv~~-~~~~~dy~VIaTg~S~rh~~aia~~v~~~lk~~~ 63 (125)
T 2o5a_A 3 NQELLQLAVNAVDDKKAEQVVALNXKG-ISLIADFFLICHGNSEKQVQAIAHELKKVAQEQG 63 (125)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBT-TBC--CEEEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 899999999999975899769997789-9741378999884779999999999999999852
No 3
>>2qv2_A OCRL, inositol polyphosphate 5-phosphatase OCRL-1; endocytosis, clathrin, APPL1, phosphoinositide, ASH, rhogap, hydrolase; 2.40A {Homo sapiens} (A:1-21,A:93-120)
Probab=55.29 E-value=4.4 Score=21.18 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.3
Q ss_pred CCCCCEEEEEECCCCCCHHCEEEEEEEC
Q ss_conf 3686349898048887200087889518
Q gi|254780562|r 30 LKAEDICHIENTSLRSLICDNMVIVSGR 57 (77)
Q Consensus 30 kKa~dI~~ldv~~~~s~~~D~fVIatg~ 57 (77)
+|-+||.+|-+..|+ ||||-.+|+
T Consensus 21 ~KlEDILVLhl~~GR----D~FIsV~G~ 44 (49)
T 2qv2_A 21 RKIEDILVLHLDRGK----DYFLTISGN 44 (49)
T ss_dssp TCSCEEECC------------CEEEEEE
T ss_pred CCHHEEEEEEECCCC----CEEEEEEEE
T ss_conf 821017999965887----189997778
No 4
>>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, alternative splicing, FAD, mitochondrion, NADP, redox-active center, selenium; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* (A:1-155,A:315-356)
Probab=42.38 E-value=1.4 Score=23.86 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=19.7
Q ss_pred CCCHHCEEEEEEECCHHHHHHHHH
Q ss_conf 872000878895188689999999
Q gi|254780562|r 44 RSLICDNMVIVSGRSTKHVASIAD 67 (77)
Q Consensus 44 ~s~~~D~fVIatg~S~rhv~Aia~ 67 (77)
...-++|+|+||++|-+|+-||-|
T Consensus 144 ~~i~Ak~vIiAT~~~~~~~~~~~~ 167 (197)
T 3dgz_A 144 TLLSAEHIVIATATSVPHIYAIGD 167 (197)
T ss_dssp EEEEEEEEEECCBCSSTTEEECGG
T ss_pred EEEECCCEEEECCCCCCCCEEEEE
T ss_conf 888416479905116777389745
No 5
>>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus HB8} PDB: 2eq8_A* 2eq9_A* (A:1-139,A:298-337)
Probab=38.58 E-value=15 Score=18.31 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCEE----------EEEECCCCCCHHCEEEEEEECCHHHHHHHHH
Q ss_conf 9999999999999843686349----------8980488872000878895188689999999
Q gi|254780562|r 15 HLDSCIATVMECLKELKAEDIC----------HIENTSLRSLICDNMVIVSGRSTKHVASIAD 67 (77)
Q Consensus 15 ~~~~~l~~i~~~l~dkKa~dI~----------~ldv~~~~s~~~D~fVIatg~S~rhv~Aia~ 67 (77)
..............++.+-|++ .+.+. ....-++++||||=+|.+|+=|+-|
T Consensus 90 ~~i~~~~~~~~~~le~~gVdvi~G~a~fid~~tV~v~-~~~~~a~~iIiAT~~~~~~~~~~g~ 151 (179)
T 2eq6_A 90 QVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG-GERYGAKSLILATETSVPGVYAIGD 151 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TEEEEEEEEEECCBCSSTTEEECGG
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEC-CEEEEEEEEEECCCCCCCCEEEEEC
T ss_conf 9999876669999975896899979999259999999-9999966999948179999899866
No 6
>>2rcf_A Unidentified carboxysome polypeptide; cyclic pentamer, structural protein; 2.15A {Halothiobacillus neapolitanus} (A:)
Probab=34.98 E-value=37 Score=16.14 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=25.8
Q ss_pred CCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHH
Q ss_conf 3686349898048887200087889518868999
Q gi|254780562|r 30 LKAEDICHIENTSLRSLICDNMVIVSGRSTKHVA 63 (77)
Q Consensus 30 kKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~ 63 (77)
..++-++++|-- | ....|+.++++|++.|+.-
T Consensus 31 ~~g~~~VA~D~v-G-AG~Ge~Vlv~~Gs~Ar~~~ 62 (91)
T 2rcf_A 31 PGAPRQVAVDAI-G-CIPGDWVLCVGSSAAREAA 62 (91)
T ss_dssp TTSCCEEEEESS-C-CCTTCEEEEEETTHHHHHT
T ss_pred CCCCEEEEEECC-C-CCCCCEEEEECCHHHHHHC
T ss_conf 999679999677-8-8999899995787887652
No 7
>>2hd3_A Ethanolamine utilization protein EUTN; beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Escherichia coli CFT073} (A:)
Probab=34.67 E-value=22 Score=17.40 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=26.4
Q ss_pred HCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHH
Q ss_conf 43686349898048887200087889518868999
Q gi|254780562|r 29 ELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVA 63 (77)
Q Consensus 29 dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~ 63 (77)
+.++.-++++|.- | ....|+.++++|++.|+.-
T Consensus 35 ~~~g~~~VAvD~v-G-AG~Ge~Vlv~~Gs~Ar~~~ 67 (103)
T 2hd3_A 35 NPDGQCAVAIDNI-G-AGTGEWVLLVSGSSARQAH 67 (103)
T ss_dssp CEEEEEEEEEESS-C-CCTTCEEEEEETHHHHHHH
T ss_pred CCCCCEEEEEECC-C-CCCCCEEEEECCHHHHHHC
T ss_conf 8789889999367-8-8999999995788997550
No 8
>>2qw7_A Carbon dioxide concentrating mechanism protein CCML; pentamer, structural protein; HET: GOL; 2.40A {Synechocystis SP} (A:1-82)
Probab=34.19 E-value=20 Score=17.58 Aligned_cols=32 Identities=3% Similarity=-0.042 Sum_probs=25.9
Q ss_pred HCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHH
Q ss_conf 4368634989804888720008788951886899
Q gi|254780562|r 29 ELKAEDICHIENTSLRSLICDNMVIVSGRSTKHV 62 (77)
Q Consensus 29 dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv 62 (77)
+.+++-.+++|-- | ...-|+.++++|++.|+.
T Consensus 35 ~~~g~~~VAvD~v-G-AG~Ge~Vlv~~Gs~Ar~~ 66 (82)
T 2qw7_A 35 QPLERYEVAGDVV-G-AGLNEWVLVARGSAARKE 66 (82)
T ss_dssp CEEEEEEEEEESS-C-CCTTCEEEEEEGGGGGCS
T ss_pred CCCCCEEEEEECC-C-CCCCCEEEEECCHHHHHH
T ss_conf 8689989999898-9-899999999676789654
No 9
>>1nf2_A Phosphatase; structural proteomics, HAD family, NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.20A {Thermotoga maritima} (A:1-83,A:189-268)
Probab=33.18 E-value=40 Score=15.98 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=16.3
Q ss_pred EEEEEEECCHHHHHHHHHHH
Q ss_conf 87889518868999999999
Q gi|254780562|r 50 NMVIVSGRSTKHVASIADNL 69 (77)
Q Consensus 50 ~fVIatg~S~rhv~Aia~~v 69 (77)
+|++|||++..-+..+...+
T Consensus 36 ~i~i~TGR~~~~~~~~~~~l 55 (163)
T 1nf2_A 36 YVVFASGRMLVSTLNVEKKY 55 (163)
T ss_dssp EEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
T ss_conf 79998899858899999984
No 10
>>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} (A:1-89,A:161-244)
Probab=31.73 E-value=42 Score=15.84 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=12.2
Q ss_pred EEEEEEECCHHHHHHHHHHH
Q ss_conf 87889518868999999999
Q gi|254780562|r 50 NMVIVSGRSTKHVASIADNL 69 (77)
Q Consensus 50 ~fVIatg~S~rhv~Aia~~v 69 (77)
.|++|||++-..++.+.+.+
T Consensus 36 ~~v~~Tgr~~~~~~~~~~~~ 55 (173)
T 1s2o_A 36 YLAYATGRSYHSARELQKQV 55 (173)
T ss_dssp EEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
T ss_conf 89999989989999999972
No 11
>>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A (A:1-94,A:179-249)
Probab=31.23 E-value=39 Score=16.04 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=16.1
Q ss_pred EEEEEEECCHHHHHHHHHHH
Q ss_conf 87889518868999999999
Q gi|254780562|r 50 NMVIVSGRSTKHVASIADNL 69 (77)
Q Consensus 50 ~fVIatg~S~rhv~Aia~~v 69 (77)
.|+||||++...+..+...+
T Consensus 35 ~~~iaTGR~~~~~~~~~~~l 54 (165)
T 2zos_A 35 EIIFNSSKTRAEQEYYRKEL 54 (165)
T ss_dssp EEEEBCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
T ss_conf 99999189889999999973
No 12
>>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} (A:308-359)
Probab=30.12 E-value=21 Score=17.53 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=20.8
Q ss_pred CCHHCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 72000878895188689999999999
Q gi|254780562|r 45 SLICDNMVIVSGRSTKHVASIADNLI 70 (77)
Q Consensus 45 s~~~D~fVIatg~S~rhv~Aia~~v~ 70 (77)
..+..|.=-++|.|++-.+|||.++.
T Consensus 19 ~li~~f~~~vkgkSn~EARaiAk~il 44 (52)
T 1dqu_A 19 AAIEKYLTQSKGKSNLEARAIAKEIA 44 (52)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 89999985346775699999999855
No 13
>>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} (A:1-85,A:201-290)
Probab=26.87 E-value=37 Score=16.17 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=13.8
Q ss_pred EEEEEEECCHHHHHHHHHHH
Q ss_conf 87889518868999999999
Q gi|254780562|r 50 NMVIVSGRSTKHVASIADNL 69 (77)
Q Consensus 50 ~fVIatg~S~rhv~Aia~~v 69 (77)
.++||||++.+.+..+++.+
T Consensus 41 ~~~ivTgr~~~~~~~~l~~l 60 (175)
T 3dnp_A 41 YVTLVTNRHFRSAQKIAKSL 60 (175)
T ss_dssp EEEEBCSSCHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHH
T ss_conf 99998999889999999980
No 14
>>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA; HET: FAD; 2.10A {Thermus thermophilus HB8} (A:1-118,A:276-335)
Probab=23.96 E-value=36 Score=16.22 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=19.6
Q ss_pred CCCEEEEEECCCCCCHHCEEEEEEE-CCHHHH
Q ss_conf 8634989804888720008788951-886899
Q gi|254780562|r 32 AEDICHIENTSLRSLICDNMVIVSG-RSTKHV 62 (77)
Q Consensus 32 a~dI~~ldv~~~~s~~~D~fVIatg-~S~rhv 62 (77)
-.|...+....+....++.+||||| +|.+.+
T Consensus 94 ~~d~f~V~t~~G~~~~akaVIIATG~t~~~~i 125 (178)
T 2zbw_A 94 EGDLFKVTTSQGNAYTAKAVIIAAGATSIPGV 125 (178)
T ss_dssp ETTEEEEEETTSCEEEEEEEEECCTBCSSTTE
T ss_pred CCCCEEEEECCCCEEEEEEEEEEECCCCCCCE
T ss_conf 48716998517864785036999714499999
Done!