Query gi|254780562|ref|YP_003064975.1| hypothetical protein CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 77 No_of_seqs 106 out of 1289 Neff 5.8 Searched_HMMs 13730 Date Wed Jun 1 09:50:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780562.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2o5aa1 d.218.1.12 (A:2-114) U 99.7 4.6E-18 3.3E-22 116.5 8.6 61 16-77 2-62 (113) 2 d2id1a1 d.218.1.12 (A:1-120) H 99.7 4E-18 2.9E-22 116.8 7.8 62 15-77 2-63 (120) 3 d2rcfa1 b.40.15.1 (A:1-82) Car 31.8 17 0.0013 15.8 3.4 31 31-63 32-62 (82) 4 d2qw7a1 b.40.15.1 (A:1-96) Car 23.1 17 0.0012 15.9 1.6 32 29-62 35-66 (96) 5 d2hd3a1 b.40.15.1 (A:1-95) Eth 22.6 19 0.0014 15.6 1.8 33 29-63 35-67 (95) 6 d1xvia_ c.108.1.10 (A:) Putati 21.8 24 0.0018 15.0 2.2 19 50-68 39-57 (232) 7 d1nrwa_ c.108.1.10 (A:) Hypoth 19.3 26 0.0019 14.9 1.9 16 51-66 37-52 (285) 8 d1wzca1 c.108.1.10 (A:1-243) P 18.0 33 0.0024 14.3 2.9 20 50-69 35-54 (243) 9 d3bypa1 d.52.9.1 (A:6-87) Puta 14.5 40 0.0029 13.8 7.1 55 20-76 10-68 (82) 10 d2b30a1 c.108.1.10 (A:18-300) 11.1 51 0.0037 13.3 2.4 20 50-69 46-65 (283) No 1 >d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]} Probab=99.73 E-value=4.6e-18 Score=116.50 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=56.9 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999984368634989804888720008788951886899999999999997439 Q gi|254780562|r 16 LDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77 (77) Q Consensus 16 ~~~~l~~i~~~l~dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~Aia~~v~~~lk~~n 77 (77) .+++++.++++|+|+||+||++||+++ .|+++||||||||+|.||++||+++|.+.+|+++ T Consensus 2 ~~el~~~i~~~l~dkKa~dI~vldv~~-~~~~~D~~VIatg~S~rh~~aia~~v~~~~k~~~ 62 (113) T d2o5aa1 2 NQELLQLAVNAVDDKKAEQVVALNMKG-ISLIADFFLICHGNSEKQVQAIAHELKKVAQEQG 62 (113) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBT-TBC--CEEEEEEESSHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHC T ss_conf 799999999999974899769997789-9732378999985778999999999999999853 No 2 >d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]} Probab=99.73 E-value=4e-18 Score=116.80 Aligned_cols=62 Identities=19% Similarity=0.434 Sum_probs=57.8 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999984368634989804888720008788951886899999999999997439 Q gi|254780562|r 15 HLDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77 (77) Q Consensus 15 ~~~~~l~~i~~~l~dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~Aia~~v~~~lk~~n 77 (77) +.+++++.|+++|+|+||+||++||+++ .|+++||||||||+|.||++||+++|.+.+|+.+ T Consensus 2 ~~~~l~~~i~~~l~d~Ka~DI~vldv~~-~~~~~D~~VI~Tg~S~rh~~aia~~i~~~lk~~~ 63 (120) T d2id1a1 2 EIQEISKLAIEALEDIKGKDIIELDTSK-LTSLFQRMIVATGDSNRQVKALANSVQVKLKEAG 63 (120) T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEEEGGG-TCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHTT T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC T ss_conf 8899999999999973888749997889-9752468999871678999999999999999839 No 3 >d2rcfa1 b.40.15.1 (A:1-82) Carboxysome shell protein {Thiobacillus neapolitanus [TaxId: 927]} Probab=31.77 E-value=17 Score=15.84 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=25.3 Q ss_pred CCCCEEEEEECCCCCCHHCEEEEEEECCHHHHH Q ss_conf 686349898048887200087889518868999 Q gi|254780562|r 31 KAEDICHIENTSLRSLICDNMVIVSGRSTKHVA 63 (77) Q Consensus 31 Ka~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~ 63 (77) .++.++++|-- | .-.-|+.++++|++.|+.- T Consensus 32 ~g~~~VA~D~v-G-AG~Ge~Vl~~~Gs~Ar~~~ 62 (82) T d2rcfa1 32 GAPRQVAVDAI-G-CIPGDWVLCVGSSAAREAA 62 (82) T ss_dssp TSCCEEEEESS-C-CCTTCEEEEEETTHHHHHT T ss_pred CCCEEEEEECC-C-CCCCCEEEEECCHHHHHHC T ss_conf 99679999677-8-8999899996787896542 No 4 >d2qw7a1 b.40.15.1 (A:1-96) Carbon dioxide concentrating mechanism protein CcmL {Synechocystis sp. (strain PCC 6803) [TaxId: 1148]} Probab=23.06 E-value=17 Score=15.88 Aligned_cols=32 Identities=3% Similarity=-0.042 Sum_probs=25.3 Q ss_pred HCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHH Q ss_conf 4368634989804888720008788951886899 Q gi|254780562|r 29 ELKAEDICHIENTSLRSLICDNMVIVSGRSTKHV 62 (77) Q Consensus 29 dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv 62 (77) +.+++-++++|-- | .-..|+.++++|+|.|+. T Consensus 35 ~~~g~~~VA~D~v-G-AG~Ge~Vlv~~Gs~Ar~~ 66 (96) T d2qw7a1 35 QPLERYEVAGDVV-G-AGLNEWVLVARGSAARKE 66 (96) T ss_dssp CEEEEEEEEEESS-C-CCTTCEEEEEEGGGGGCS T ss_pred CCCCCEEEEEECC-C-CCCCCEEEEECCHHHHHH T ss_conf 8689989999898-9-899999999676799654 No 5 >d2hd3a1 b.40.15.1 (A:1-95) Ethanolamine utilization protein EutN {Escherichia coli [TaxId: 562]} Probab=22.64 E-value=19 Score=15.56 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=26.2 Q ss_pred HCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHH Q ss_conf 43686349898048887200087889518868999 Q gi|254780562|r 29 ELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVA 63 (77) Q Consensus 29 dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~ 63 (77) +..++-++++|-- | .-..|+.++++|+|.|+.- T Consensus 35 ~~~g~~~VA~D~v-G-AG~Ge~Vlv~~Gs~Ar~~~ 67 (95) T d2hd3a1 35 NPDGQCAVAIDNI-G-AGTGEWVLLVSGSSARQAH 67 (95) T ss_dssp CEEEEEEEEEESS-C-CCTTCEEEEEETHHHHHHH T ss_pred CCCCCEEEEEECC-C-CCCCCEEEEECCHHHHHHC T ss_conf 8789989999788-9-8899999995888996140 No 6 >d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]} Probab=21.85 E-value=24 Score=15.03 Aligned_cols=19 Identities=5% Similarity=0.300 Sum_probs=13.0 Q ss_pred EEEEEEECCHHHHHHHHHH Q ss_conf 8788951886899999999 Q gi|254780562|r 50 NMVIVSGRSTKHVASIADN 68 (77) Q Consensus 50 ~fVIatg~S~rhv~Aia~~ 68 (77) .|++|||++-..+..+... T Consensus 39 ~~~i~TGR~~~~~~~~~~~ 57 (232) T d1xvia_ 39 PVILCSSKTSAEMLYLQKT 57 (232) T ss_dssp CEEEECSSCHHHHHHHHHH T ss_pred EEEEEECCCHHHCHHHHHH T ss_conf 8999968973653068887 No 7 >d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]} Probab=19.30 E-value=26 Score=14.88 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=7.0 Q ss_pred EEEEEECCHHHHHHHH Q ss_conf 7889518868999999 Q gi|254780562|r 51 MVIVSGRSTKHVASIA 66 (77) Q Consensus 51 fVIatg~S~rhv~Aia 66 (77) |++|||+|-+.+..+. T Consensus 37 ~~i~TGR~~~~~~~~~ 52 (285) T d1nrwa_ 37 VVVSTGRAHFDVMSIF 52 (285) T ss_dssp EEEECSSCHHHHHHHH T ss_pred EEEECCCCHHHHHHHH T ss_conf 9999799989999999 No 8 >d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=17.96 E-value=33 Score=14.34 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=12.7 Q ss_pred EEEEEEECCHHHHHHHHHHH Q ss_conf 87889518868999999999 Q gi|254780562|r 50 NMVIVSGRSTKHVASIADNL 69 (77) Q Consensus 50 ~fVIatg~S~rhv~Aia~~v 69 (77) .|++|||++-..+.-+...+ T Consensus 35 ~~~~aTGR~~~~~~~~~~~~ 54 (243) T d1wzca1 35 EIIFNSSKTRAEQEYYRKEL 54 (243) T ss_dssp EEEEECSSCHHHHHHHHHHH T ss_pred EEEEEECCCHHHHHHHHHHH T ss_conf 99999198889999999983 No 9 >d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Probab=14.48 E-value=40 Score=13.84 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=36.9 Q ss_pred HHHHHHHHHHCCCC---CEEEEEECCCCCCHHCEEEEEEEC-CHHHHHHHHHHHHHHHHHC Q ss_conf 99999999843686---349898048887200087889518-8689999999999999743 Q gi|254780562|r 20 IATVMECLKELKAE---DICHIENTSLRSLICDNMVIVSGR-STKHVASIADNLISYLKKK 76 (77) Q Consensus 20 l~~i~~~l~dkKa~---dI~~ldv~~~~s~~~D~fVIatg~-S~rhv~Aia~~v~~~lk~~ 76 (77) ++.++....+.+.- ++.+-.. |...+.|.-|...+. |-.+..+|++.++..++++ T Consensus 10 I~~~i~~~~~~~vv~vh~lr~r~~--G~~~~vd~hi~v~~~~sv~~aH~i~~~ve~~i~~~ 68 (82) T d3bypa1 10 IRAFLQERIRGRALEVHDLKTRRA--GPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQA 68 (82) T ss_dssp HHHHHHHHHTTTCSEEEEEEEEEE--TTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCEEEEEEEEEEE--CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999589978030168875698--89899999999898998999999999999999965 No 10 >d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]} Probab=11.10 E-value=51 Score=13.26 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=14.3 Q ss_pred EEEEEEECCHHHHHHHHHHH Q ss_conf 87889518868999999999 Q gi|254780562|r 50 NMVIVSGRSTKHVASIADNL 69 (77) Q Consensus 50 ~fVIatg~S~rhv~Aia~~v 69 (77) .++||||+|-+-+..+...+ T Consensus 46 ~v~i~TGR~~~~~~~~~~~l 65 (283) T d2b30a1 46 MVSICTGRSKVGILSAFGEE 65 (283) T ss_dssp EEEEECSSCHHHHHHHHCHH T ss_pred EEEEECCCCHHHHHHHHHHH T ss_conf 89998699989999999984 Done!