Query         gi|254780562|ref|YP_003064975.1| hypothetical protein CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 77
No_of_seqs    106 out of 1289
Neff          5.8 
Searched_HMMs 13730
Date          Wed Jun  1 09:50:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780562.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2o5aa1 d.218.1.12 (A:2-114) U  99.7 4.6E-18 3.3E-22  116.5   8.6   61   16-77      2-62  (113)
  2 d2id1a1 d.218.1.12 (A:1-120) H  99.7   4E-18 2.9E-22  116.8   7.8   62   15-77      2-63  (120)
  3 d2rcfa1 b.40.15.1 (A:1-82) Car  31.8      17  0.0013   15.8   3.4   31   31-63     32-62  (82)
  4 d2qw7a1 b.40.15.1 (A:1-96) Car  23.1      17  0.0012   15.9   1.6   32   29-62     35-66  (96)
  5 d2hd3a1 b.40.15.1 (A:1-95) Eth  22.6      19  0.0014   15.6   1.8   33   29-63     35-67  (95)
  6 d1xvia_ c.108.1.10 (A:) Putati  21.8      24  0.0018   15.0   2.2   19   50-68     39-57  (232)
  7 d1nrwa_ c.108.1.10 (A:) Hypoth  19.3      26  0.0019   14.9   1.9   16   51-66     37-52  (285)
  8 d1wzca1 c.108.1.10 (A:1-243) P  18.0      33  0.0024   14.3   2.9   20   50-69     35-54  (243)
  9 d3bypa1 d.52.9.1 (A:6-87) Puta  14.5      40  0.0029   13.8   7.1   55   20-76     10-68  (82)
 10 d2b30a1 c.108.1.10 (A:18-300)   11.1      51  0.0037   13.3   2.4   20   50-69     46-65  (283)

No 1  
>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]}
Probab=99.73  E-value=4.6e-18  Score=116.50  Aligned_cols=61  Identities=25%  Similarity=0.357  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999984368634989804888720008788951886899999999999997439
Q gi|254780562|r   16 LDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN   77 (77)
Q Consensus        16 ~~~~l~~i~~~l~dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~Aia~~v~~~lk~~n   77 (77)
                      .+++++.++++|+|+||+||++||+++ .|+++||||||||+|.||++||+++|.+.+|+++
T Consensus         2 ~~el~~~i~~~l~dkKa~dI~vldv~~-~~~~~D~~VIatg~S~rh~~aia~~v~~~~k~~~   62 (113)
T d2o5aa1           2 NQELLQLAVNAVDDKKAEQVVALNMKG-ISLIADFFLICHGNSEKQVQAIAHELKKVAQEQG   62 (113)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEEECBT-TBC--CEEEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf             799999999999974899769997789-9732378999985778999999999999999853


No 2  
>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]}
Probab=99.73  E-value=4e-18  Score=116.80  Aligned_cols=62  Identities=19%  Similarity=0.434  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999984368634989804888720008788951886899999999999997439
Q gi|254780562|r   15 HLDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN   77 (77)
Q Consensus        15 ~~~~~l~~i~~~l~dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~Aia~~v~~~lk~~n   77 (77)
                      +.+++++.|+++|+|+||+||++||+++ .|+++||||||||+|.||++||+++|.+.+|+.+
T Consensus         2 ~~~~l~~~i~~~l~d~Ka~DI~vldv~~-~~~~~D~~VI~Tg~S~rh~~aia~~i~~~lk~~~   63 (120)
T d2id1a1           2 EIQEISKLAIEALEDIKGKDIIELDTSK-LTSLFQRMIVATGDSNRQVKALANSVQVKLKEAG   63 (120)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEEEEEGGG-TCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf             8899999999999973888749997889-9752468999871678999999999999999839


No 3  
>d2rcfa1 b.40.15.1 (A:1-82) Carboxysome shell protein {Thiobacillus neapolitanus [TaxId: 927]}
Probab=31.77  E-value=17  Score=15.84  Aligned_cols=31  Identities=13%  Similarity=0.124  Sum_probs=25.3

Q ss_pred             CCCCEEEEEECCCCCCHHCEEEEEEECCHHHHH
Q ss_conf             686349898048887200087889518868999
Q gi|254780562|r   31 KAEDICHIENTSLRSLICDNMVIVSGRSTKHVA   63 (77)
Q Consensus        31 Ka~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~   63 (77)
                      .++.++++|-- | .-.-|+.++++|++.|+.-
T Consensus        32 ~g~~~VA~D~v-G-AG~Ge~Vl~~~Gs~Ar~~~   62 (82)
T d2rcfa1          32 GAPRQVAVDAI-G-CIPGDWVLCVGSSAAREAA   62 (82)
T ss_dssp             TSCCEEEEESS-C-CCTTCEEEEEETTHHHHHT
T ss_pred             CCCEEEEEECC-C-CCCCCEEEEECCHHHHHHC
T ss_conf             99679999677-8-8999899996787896542


No 4  
>d2qw7a1 b.40.15.1 (A:1-96) Carbon dioxide concentrating mechanism protein CcmL {Synechocystis sp. (strain PCC 6803) [TaxId: 1148]}
Probab=23.06  E-value=17  Score=15.88  Aligned_cols=32  Identities=3%  Similarity=-0.042  Sum_probs=25.3

Q ss_pred             HCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHH
Q ss_conf             4368634989804888720008788951886899
Q gi|254780562|r   29 ELKAEDICHIENTSLRSLICDNMVIVSGRSTKHV   62 (77)
Q Consensus        29 dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv   62 (77)
                      +.+++-++++|-- | .-..|+.++++|+|.|+.
T Consensus        35 ~~~g~~~VA~D~v-G-AG~Ge~Vlv~~Gs~Ar~~   66 (96)
T d2qw7a1          35 QPLERYEVAGDVV-G-AGLNEWVLVARGSAARKE   66 (96)
T ss_dssp             CEEEEEEEEEESS-C-CCTTCEEEEEEGGGGGCS
T ss_pred             CCCCCEEEEEECC-C-CCCCCEEEEECCHHHHHH
T ss_conf             8689989999898-9-899999999676799654


No 5  
>d2hd3a1 b.40.15.1 (A:1-95) Ethanolamine utilization protein EutN {Escherichia coli [TaxId: 562]}
Probab=22.64  E-value=19  Score=15.56  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=26.2

Q ss_pred             HCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHH
Q ss_conf             43686349898048887200087889518868999
Q gi|254780562|r   29 ELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVA   63 (77)
Q Consensus        29 dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~   63 (77)
                      +..++-++++|-- | .-..|+.++++|+|.|+.-
T Consensus        35 ~~~g~~~VA~D~v-G-AG~Ge~Vlv~~Gs~Ar~~~   67 (95)
T d2hd3a1          35 NPDGQCAVAIDNI-G-AGTGEWVLLVSGSSARQAH   67 (95)
T ss_dssp             CEEEEEEEEEESS-C-CCTTCEEEEEETHHHHHHH
T ss_pred             CCCCCEEEEEECC-C-CCCCCEEEEECCHHHHHHC
T ss_conf             8789989999788-9-8899999995888996140


No 6  
>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}
Probab=21.85  E-value=24  Score=15.03  Aligned_cols=19  Identities=5%  Similarity=0.300  Sum_probs=13.0

Q ss_pred             EEEEEEECCHHHHHHHHHH
Q ss_conf             8788951886899999999
Q gi|254780562|r   50 NMVIVSGRSTKHVASIADN   68 (77)
Q Consensus        50 ~fVIatg~S~rhv~Aia~~   68 (77)
                      .|++|||++-..+..+...
T Consensus        39 ~~~i~TGR~~~~~~~~~~~   57 (232)
T d1xvia_          39 PVILCSSKTSAEMLYLQKT   57 (232)
T ss_dssp             CEEEECSSCHHHHHHHHHH
T ss_pred             EEEEEECCCHHHCHHHHHH
T ss_conf             8999968973653068887


No 7  
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}
Probab=19.30  E-value=26  Score=14.88  Aligned_cols=16  Identities=38%  Similarity=0.509  Sum_probs=7.0

Q ss_pred             EEEEEECCHHHHHHHH
Q ss_conf             7889518868999999
Q gi|254780562|r   51 MVIVSGRSTKHVASIA   66 (77)
Q Consensus        51 fVIatg~S~rhv~Aia   66 (77)
                      |++|||+|-+.+..+.
T Consensus        37 ~~i~TGR~~~~~~~~~   52 (285)
T d1nrwa_          37 VVVSTGRAHFDVMSIF   52 (285)
T ss_dssp             EEEECSSCHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHH
T ss_conf             9999799989999999


No 8  
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=17.96  E-value=33  Score=14.34  Aligned_cols=20  Identities=10%  Similarity=0.212  Sum_probs=12.7

Q ss_pred             EEEEEEECCHHHHHHHHHHH
Q ss_conf             87889518868999999999
Q gi|254780562|r   50 NMVIVSGRSTKHVASIADNL   69 (77)
Q Consensus        50 ~fVIatg~S~rhv~Aia~~v   69 (77)
                      .|++|||++-..+.-+...+
T Consensus        35 ~~~~aTGR~~~~~~~~~~~~   54 (243)
T d1wzca1          35 EIIFNSSKTRAEQEYYRKEL   54 (243)
T ss_dssp             EEEEECSSCHHHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHH
T ss_conf             99999198889999999983


No 9  
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}
Probab=14.48  E-value=40  Score=13.84  Aligned_cols=55  Identities=15%  Similarity=0.123  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHCCCC---CEEEEEECCCCCCHHCEEEEEEEC-CHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999843686---349898048887200087889518-8689999999999999743
Q gi|254780562|r   20 IATVMECLKELKAE---DICHIENTSLRSLICDNMVIVSGR-STKHVASIADNLISYLKKK   76 (77)
Q Consensus        20 l~~i~~~l~dkKa~---dI~~ldv~~~~s~~~D~fVIatg~-S~rhv~Aia~~v~~~lk~~   76 (77)
                      ++.++....+.+.-   ++.+-..  |...+.|.-|...+. |-.+..+|++.++..++++
T Consensus        10 I~~~i~~~~~~~vv~vh~lr~r~~--G~~~~vd~hi~v~~~~sv~~aH~i~~~ve~~i~~~   68 (82)
T d3bypa1          10 IRAFLQERIRGRALEVHDLKTRRA--GPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQA   68 (82)
T ss_dssp             HHHHHHHHHTTTCSEEEEEEEEEE--TTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCEEEEEEEEEEE--CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999589978030168875698--89899999999898998999999999999999965


No 10 
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}
Probab=11.10  E-value=51  Score=13.26  Aligned_cols=20  Identities=25%  Similarity=0.228  Sum_probs=14.3

Q ss_pred             EEEEEEECCHHHHHHHHHHH
Q ss_conf             87889518868999999999
Q gi|254780562|r   50 NMVIVSGRSTKHVASIADNL   69 (77)
Q Consensus        50 ~fVIatg~S~rhv~Aia~~v   69 (77)
                      .++||||+|-+-+..+...+
T Consensus        46 ~v~i~TGR~~~~~~~~~~~l   65 (283)
T d2b30a1          46 MVSICTGRSKVGILSAFGEE   65 (283)
T ss_dssp             EEEEECSSCHHHHHHHHCHH
T ss_pred             EEEEECCCCHHHHHHHHHHH
T ss_conf             89998699989999999984


Done!