RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780562|ref|YP_003064975.1| hypothetical protein CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62] (77 letters) >2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12 Length = 125 Score = 45.7 bits (108), Expect = 3e-06 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 20 IATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77 + + + + KAE + + N SLI D +I G S K V +IA L +++ Sbjct: 7 LQLAVNAVDDKKAEQVVAL-NMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQG 63 >2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Chromobacterium violaceum atcc 12472} SCOP: d.218.1.12 Length = 130 Score = 41.6 bits (97), Expect = 4e-05 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 23 VMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77 +E L+++K +DI + +TS + + M++ +G S + V ++A+++ LK+ Sbjct: 10 AIEALEDIKGKDIIEL-DTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEAG 63 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 37.3 bits (85), Expect = 9e-04 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 14/32 (43%) Query: 6 EKQA---LQT-----ADHLDS----CIATVME 25 EKQA LQ AD DS I ME Sbjct: 18 EKQALKKLQASLKLYAD--DSAPALAIKATME 47 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 30.3 bits (68), Expect = 0.10 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 18/81 (22%) Query: 9 ALQTADHLDS---CIATVMECLKELKAEDICH--IENTSLRSLI----CDN-------MV 52 A+ D +S + + L + C+ NTSL I +N M+ Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVR--CYEAYPNTSLPPSILEDSLENNEGVPSPML 339 Query: 53 IVSGRSTKHVASIADNLISYL 73 +S + + V + S+L Sbjct: 340 SISNLTQEQVQDYVNKTNSHL 360 Score = 26.1 bits (57), Expect = 1.9 Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 7/38 (18%) Query: 4 NTEK--QALQT-----ADHLDSCIATVMECLKELKAED 34 NT+ + L+ + I E L EL Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202 Score = 25.7 bits (56), Expect = 2.6 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 9/39 (23%) Query: 41 TSLRSLICDNMVIVSGRSTKHVASIADNLISY---LKKK 76 S R L +S S +HV + L+++ Sbjct: 4 YSTRPL------TLSHGSLEHVLLVPTASFFIASQLQEQ 36 >3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ntb_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* 1ddx_A* 1cvu_A* Length = 587 Score = 30.3 bits (68), Expect = 0.11 Identities = 7/14 (50%), Positives = 11/14 (78%) Query: 38 IENTSLRSLICDNM 51 I S++SLIC+N+ Sbjct: 528 INTASIQSLICNNV 541 >1cvu_A Prostaglandin H2 synthase-2; COX-2, cyclooxygenase, prostaglandin, arachidonate, endoperoxide, oxidoreductase; HET: NAG MAN BOG ACD; 2.40A {Mus musculus} SCOP: a.93.1.2 g.3.11.1 PDB: 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 1pxx_A* 1ddx_A* Length = 552 Score = 29.4 bits (66), Expect = 0.20 Identities = 7/14 (50%), Positives = 11/14 (78%) Query: 38 IENTSLRSLICDNM 51 I S++SLIC+N+ Sbjct: 528 INTASIQSLICNNV 541 >3nyh_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, bromide, chloride, I MPD, thiocyanate ION; HET: SEP HEM NAG MAN; 1.77A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3erh_A* 3faq_A* 3fnl_A* 2z5z_A* 2o86_A* ... Length = 595 Score = 29.0 bits (64), Expect = 0.28 Identities = 6/13 (46%), Positives = 8/13 (61%) Query: 38 IENTSLRSLICDN 50 ++ S LICDN Sbjct: 544 LQKVSFSRLICDN 556 >1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxidase, prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 1pth_A* 1u67_A* 1ht8_A* 1ebv_A* 1ht5_A* 1prh_A* Length = 553 Score = 28.7 bits (64), Expect = 0.29 Identities = 4/14 (28%), Positives = 9/14 (64%) Query: 38 IENTSLRSLICDNM 51 ++ +L+ L+C N Sbjct: 528 VKTATLKKLVCLNT 541 >2gj1_A Lactoperoxidase, LPO; oxidoreductase, metal-binding protein; HET: NAG MAN HEM; 2.30A {Bos taurus} PDB: 3bxi_A* 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3erh_A* 3faq_A* 2gjm_A* 3fnl_A* 2z5z_A* 2o86_A* ... Length = 583 Score = 27.7 bits (61), Expect = 0.57 Identities = 6/13 (46%), Positives = 8/13 (61%) Query: 38 IENTSLRSLICDN 50 ++ S LICDN Sbjct: 532 LQKVSFSRLICDN 544 >1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase- bromide complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 3f9p_C* Length = 466 Score = 27.3 bits (60), Expect = 0.82 Identities = 7/18 (38%), Positives = 10/18 (55%) Query: 38 IENTSLRSLICDNMVIVS 55 + SL +ICDN I + Sbjct: 416 LAQISLPRIICDNTGITT 433 >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyridoxal phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 452 Score = 24.6 bits (53), Expect = 4.9 Identities = 4/21 (19%), Positives = 7/21 (33%) Query: 12 TADHLDSCIATVMECLKELKA 32 T + + + EL A Sbjct: 420 TETDIHKALDLLDRAFSELSA 440 >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 Score = 24.3 bits (51), Expect = 6.9 Identities = 7/32 (21%), Positives = 15/32 (46%) Query: 12 TADHLDSCIATVMECLKELKAEDICHIENTSL 43 +H++ + T L L E++ + T+L Sbjct: 417 EREHVEHLVTTFDRVLDRLADENLLSWQGTNL 448 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.127 0.354 Gapped Lambda K H 0.267 0.0506 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 558,959 Number of extensions: 18943 Number of successful extensions: 114 Number of sequences better than 10.0: 1 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 29 Length of query: 77 Length of database: 5,693,230 Length adjustment: 46 Effective length of query: 31 Effective length of database: 4,578,006 Effective search space: 141918186 Effective search space used: 141918186 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.6 bits)