HHsearch alignment for GI: 254780563 and conserved domain: COG4143

>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism].
Probab=99.96  E-value=2.3e-28  Score=181.49  Aligned_cols=186  Identities=15%  Similarity=0.127  Sum_probs=141.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCH---HHH-HHHHHHHHHHCCCCCCCCCHHH-----HHHHHHHHC
Q ss_conf             9025999999999999986124445880899818998---999-9999999987598621000013-----566765210
Q gi|254780563|r    1 MFKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQNQ---SVM-LPIIHSFEERTGVKISPIYTSS-----IQRPPITQG   71 (195)
Q Consensus         1 mmkk~~~~~l~l~~~~~~~~~~~~~~~~lvVYs~~~~---~~~-~~~~~~Fek~tgIkV~~~~~~~-----~~~~~~~~~   71 (195)
T Consensus         1 m~~-~l~~~~~~all~~~~~~a~~~t~~LtVytydSF~~ewg~Gp~vk~~FE~~~~~~v~fV~~~d~v~llnRl~leg~~   79 (336)
T COG4143           1 MRR-LLRALIGLALLVSAALGAQAATPTLTVYTYDSFASEWGPGPKVKKAFEAEYGCKVNFVALGDGVELLNRLILEGKN   79 (336)
T ss_pred             CHH-HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf             902-4999999999999865776348538999976342256885789999999859528999707589999999970789


Q ss_pred             CCCCEEEECCHHHHH--HHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHH
Q ss_conf             666557504223323--43310000123422-234720001222223443450588873344013445578888408667
Q gi|254780563|r   72 SPVDVIITKDETSLA--LNEDLLHKLPAHLI-KKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQW  148 (195)
Q Consensus        72 ~~~d~~~~~d~~~l~--~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~  148 (195)
T Consensus        80 ~~ADvvvGldn~~l~~A~~~~lf~~~~~d~~~~~vp~~~~~d~f-~~P~DyGy~a~vYd~~~~~--~ppksL~dL~~~~y  156 (336)
T COG4143          80 PKADVVVGLDNNLLARARETGLFAPYGVDASDVPVPEGWKIDTF-ALPYDYGYFAFVYDKTKLK--NPPKSLKDLVEPEY  156 (336)
T ss_pred             CCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEECHHHHC--CCCCCHHHHCCCCC
T ss_conf             88858993472778888855876667898557888765356751-0124541289997657752--87626898638512


Q ss_pred             CCEEEECCC--CCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC
Q ss_conf             685996289--830499999999960869999999998608870
Q gi|254780563|r  149 KKRLSIAPN--NISFHRLLNTMEQTPNKTVVQDFIKNITANEIL  190 (195)
Q Consensus       149 kG~i~~~~~--~~s~~~~~~a~~~~~G~~~~~~~l~~l~~N~~~  190 (195)
T Consensus       157 ~~~ii~qdPrtSspGl~fLlW~~svyg~d~~~~~W~kL~~~~v~  200 (336)
T COG4143         157 AGKIIYQDPRTSSPGLGFLLWTISVYGEDGAPEAWAKLADNGVT  200 (336)
T ss_pred             CCCEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCEE
T ss_conf             69578069887884078899998763623189999999858868