HHsearch alignment for GI: 254780563 and conserved domain: COG4143
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism].
Probab=99.96 E-value=2.3e-28 Score=181.49 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=141.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCH---HHH-HHHHHHHHHHCCCCCCCCCHHH-----HHHHHHHHC
Q ss_conf 9025999999999999986124445880899818998---999-9999999987598621000013-----566765210
Q gi|254780563|r 1 MFKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQNQ---SVM-LPIIHSFEERTGVKISPIYTSS-----IQRPPITQG 71 (195)
Q Consensus 1 mmkk~~~~~l~l~~~~~~~~~~~~~~~~lvVYs~~~~---~~~-~~~~~~Fek~tgIkV~~~~~~~-----~~~~~~~~~ 71 (195)
T Consensus 1 m~~-~l~~~~~~all~~~~~~a~~~t~~LtVytydSF~~ewg~Gp~vk~~FE~~~~~~v~fV~~~d~v~llnRl~leg~~ 79 (336)
T COG4143 1 MRR-LLRALIGLALLVSAALGAQAATPTLTVYTYDSFASEWGPGPKVKKAFEAEYGCKVNFVALGDGVELLNRLILEGKN 79 (336)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 902-4999999999999865776348538999976342256885789999999859528999707589999999970789
Q ss_pred CCCCEEEECCHHHHH--HHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHH
Q ss_conf 666557504223323--43310000123422-234720001222223443450588873344013445578888408667
Q gi|254780563|r 72 SPVDVIITKDETSLA--LNEDLLHKLPAHLI-KKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQW 148 (195)
Q Consensus 72 ~~~d~~~~~d~~~l~--~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~ 148 (195)
T Consensus 80 ~~ADvvvGldn~~l~~A~~~~lf~~~~~d~~~~~vp~~~~~d~f-~~P~DyGy~a~vYd~~~~~--~ppksL~dL~~~~y 156 (336)
T COG4143 80 PKADVVVGLDNNLLARARETGLFAPYGVDASDVPVPEGWKIDTF-ALPYDYGYFAFVYDKTKLK--NPPKSLKDLVEPEY 156 (336)
T ss_pred CCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEECHHHHC--CCCCCHHHHCCCCC
T ss_conf 88858993472778888855876667898557888765356751-0124541289997657752--87626898638512
Q ss_pred CCEEEECCC--CCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC
Q ss_conf 685996289--830499999999960869999999998608870
Q gi|254780563|r 149 KKRLSIAPN--NISFHRLLNTMEQTPNKTVVQDFIKNITANEIL 190 (195)
Q Consensus 149 kG~i~~~~~--~~s~~~~~~a~~~~~G~~~~~~~l~~l~~N~~~ 190 (195)
T Consensus 157 ~~~ii~qdPrtSspGl~fLlW~~svyg~d~~~~~W~kL~~~~v~ 200 (336)
T COG4143 157 AGKIIYQDPRTSSPGLGFLLWTISVYGEDGAPEAWAKLADNGVT 200 (336)
T ss_pred CCCEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCEE
T ss_conf 69578069887884078899998763623189999999858868