HHsearch alignment for GI: 254780563 and conserved domain: PRK09501
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed.
Probab=99.89 E-value=1.7e-22 Score=148.07 Aligned_cols=183 Identities=13% Similarity=0.118 Sum_probs=123.7
Q ss_pred CHHHHHHHHHHH-HHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HHH-HCCCCCE
Q ss_conf 025999999999-99998612444588089981899899999999999875986210000135667---652-1066655
Q gi|254780563|r 2 FKRTIYTYLLLL-CGFTEAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRP---PIT-QGSPVDV 76 (195)
Q Consensus 2 mkk~~~~~l~l~-~~~~~~~~~~~~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~---~~~-~~~~~d~ 76 (195)
T Consensus 1 ~~~~~~~ll~~~a~~l~~~~~~a~~~~~L~i~~W~~Y-i~~~~i~~Fe~etGikV~~~~~~s~ee~~akL~a~~~~~yDv 79 (348)
T PRK09501 1 MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEY-VPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDL 79 (348)
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEE
T ss_conf 9368999999999997350335433897999871001-897899999999898899995499999999997179998289
Q ss_pred EEECCHH-HHHHHHHHHCCCCCCCC---CCCCCCCCC-----CCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHH
Q ss_conf 7504223-32343310000123422---234720001-----22222344345058887334401344557888840866
Q gi|254780563|r 77 IITKDET-SLALNEDLLHKLPAHLI---KKNSFVLKN-----ENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQ 147 (195)
Q Consensus 77 ~~~~d~~-~l~~~~~~l~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~ 147 (195)
T Consensus 80 v~ps~~~v~~l~~~gll~~LD~s~ipN~~nl~p~~~~~~~dp~~~y~vPy~wGt~Gi~yn~d~v~~~-~~~SW~dL~dp~ 158 (348)
T PRK09501 80 VVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPK-SVTSWADLWKPE 158 (348)
T ss_pred EEECHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCCC-CCCCHHHHCCHH
T ss_conf 9979689999997798454784228481226976744774899848988997511599850114788-888789854966
Q ss_pred HCCEEEECCCCCCHHHHHHHHHHHH---------CHHHHHHHHHHHHHCC
Q ss_conf 7685996289830499999999960---------8699999999986088
Q gi|254780563|r 148 WKKRLSIAPNNISFHRLLNTMEQTP---------NKTVVQDFIKNITANE 188 (195)
Q Consensus 148 ~kG~i~~~~~~~s~~~~~~a~~~~~---------G~~~~~~~l~~l~~N~ 188 (195)
T Consensus 159 ~kGki~~~d~~~~~--~~~al~~lG~~~n~~d~~~l~~a~~~L~~~~~~i 206 (348)
T PRK09501 159 YKGSLLLTDDAREV--FQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNV 206 (348)
T ss_pred HCCEEEECCCHHHH--HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCE
T ss_conf 47907971667899--9999998279988899999999999999851105