HHsearch alignment for GI: 254780563 and conserved domain: PRK10682
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional.
Probab=99.83 E-value=6.9e-20 Score=133.16 Aligned_cols=183 Identities=14% Similarity=0.150 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHHHHHHH-CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEE
Q ss_conf 0259999999999999861-24445880899818998999999999998759862100001356676---5210666557
Q gi|254780563|r 2 FKRTIYTYLLLLCGFTEAF-STENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVI 77 (195)
Q Consensus 2 mkk~~~~~l~l~~~~~~~~-~~~~~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~ 77 (195)
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~aa~~~~Lnv~nW~~Y-i~p~~i~~FeketGikV~~~~~~snee~~akl~ag~~gyDvv 82 (370)
T PRK10682 4 LNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDY-IAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLV 82 (370)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCCCC-CCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEE
T ss_conf 7788999999999999852056642797999816765-797799999999798899995499899999996699999889
Q ss_pred EECCH-HHHHHHHHHHCCCCCCCCC---CCCCCCCC-------CCCCCCCCCCCEEEEEEEHHHHCC----CCCCCCHHH
Q ss_conf 50422-3323433100001234222---34720001-------222223443450588873344013----445578888
Q gi|254780563|r 78 ITKDE-TSLALNEDLLHKLPAHLIK---KNSFVLKN-------ENKKLMRISFDTQVLAYSTKRIKI----ADLPKSVFD 142 (195)
Q Consensus 78 ~~~d~-~~l~~~~~~l~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~~n~~~~~~----~~~P~sw~D 142 (195)
T Consensus 83 ~ps~~~v~~~~~~gll~pLD~sklpN~~ni~p~~~~~~~~~dpg~~YsVPy~wGt~GI~Yn~d~v~~~~g~~~p~~sW~~ 162 (370)
T PRK10682 83 VPSASFLERQLTAGVFQPLDKSKLPNWKNLDPELLKLVAKHDPDNKYAMPYMWATTGIGYNVDKVKAVLGEDAPVDSWDL 162 (370)
T ss_pred EECHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHHHHHCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCHHHH
T ss_conf 97779999999769846477000867444299988410036999759988884225999976544223467888462998
Q ss_pred HCCHHHCCE-----EEECCCCCCHHHHHHHHHHHHCH-----------HHHHHHHHHHHHCC
Q ss_conf 408667685-----99628983049999999996086-----------99999999986088
Q gi|254780563|r 143 LTNAQWKKR-----LSIAPNNISFHRLLNTMEQTPNK-----------TVVQDFIKNITANE 188 (195)
Q Consensus 143 L~~p~~kG~-----i~~~~~~~s~~~~~~a~~~~~G~-----------~~~~~~l~~l~~N~ 188 (195)
T Consensus 163 l~~P~~~~k~k~~~v~~ld~~~~~--~~~aL~~-lG~~~n~~~~~d~~~aa~~~L~~~kp~v 221 (370)
T PRK10682 163 VLKPENLEKLKSCGVSFLDAPEEI--FATVLNY-LGKDPNSTKADDYTGPATDLLLKLRPNI 221 (370)
T ss_pred HHCHHHHHHCCCCCEEEECCHHHH--HHHHHHH-CCCCCCCCCHHHHHHHHHHHHHHHCHHC
T ss_conf 649275653035855897688899--9999997-6999899999999999999999712224