HHsearch alignment for GI: 254780563 and conserved domain: TIGR03227
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=100.00 E-value=2.3e-35 Score=221.44 Aligned_cols=186 Identities=17% Similarity=0.180 Sum_probs=145.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC-----HHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHCCC
Q ss_conf 02599999999999998612444588089981899-----89999999999987598621000013566---76521066
Q gi|254780563|r 2 FKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQN-----QSVMLPIIHSFEERTGVKISPIYTSSIQR---PPITQGSP 73 (195)
Q Consensus 2 mkk~~~~~l~l~~~~~~~~~~~~~~~~lvVYs~~~-----~~~~~~~~~~Fek~tgIkV~~~~~~~~~~---~~~~~~~~ 73 (195)
T Consensus 12 ~~~~~~~~~~~~~~~~~-~~~a~a~~~~~vy~~~~~~~~~~~~~~~~~~aFek~tGikV~~v~~~sge~laRl~aEk~nP 90 (367)
T TIGR03227 12 LRRFALAAGAAALLQGA-AAPAQAAAVVLVYSADGLEDGDNSLYQDQFDAFEKAEGIKVNIVEAGGGEVVERAAKEKGNP 90 (367)
T ss_pred HHHHHHHHHHHHHHHHC-CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCC
T ss_conf 99999999999998642-35554586599996466434443468887688888669838999897799999999522799
Q ss_pred -CCEEEECCHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCE
Q ss_conf -655750422332-343310000123422234720001222223443450588873344013445578888408667685
Q gi|254780563|r 74 -VDVIITKDETSL-ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKR 151 (195)
Q Consensus 74 -~d~~~~~d~~~l-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~ 151 (195)
T Consensus 91 qaDVv~~~d~~~~~A~~~GLl~py~~~~~~~ip~~~k~~dg~~~~~~~~~~~~~yN~~~~k--~~PkSW~DL~dP~ykgk 168 (367)
T TIGR03227 91 KADVIVTAPPFIQQAAAEGLLANFNSDAAKAIPAIAKAADGLWAPFVKNYFSFAINPKLLK--SAPASFADLLDADFKGK 168 (367)
T ss_pred CCEEEEECCHHHHHHHHCCCCCCCCCCCHHHCCHHHHCCCCCEEEEECCEEEEEEEHHHHC--CCCCCHHHHHCCCCCCE
T ss_conf 7209997857999999788956278966455777663779838988555799999857705--79988998728533782
Q ss_pred EEECCCC--CCHHHHHHHHHHHHC-HHHHHHHHHHHHHCCCC
Q ss_conf 9962898--304999999999608-69999999998608870
Q gi|254780563|r 152 LSIAPNN--ISFHRLLNTMEQTPN-KTVVQDFIKNITANEIL 190 (195)
Q Consensus 152 i~~~~~~--~s~~~~~~a~~~~~G-~~~~~~~l~~l~~N~~~ 190 (195)
T Consensus 169 I~~~dP~tS~~g~~~l~~~~~~~G~eD~a~~~~~~L~~N~~~ 210 (367)
T TIGR03227 169 LAYSNPAQAADGMAVIILAFALFGSEDAAFAYLAKLEANNKF 210 (367)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCE
T ss_conf 895287766179999999999709853889999988744867