HHsearch results for GI: 254780563 and protein with PDBid: 1hsj_A
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=98.97 E-value=8.4e-09 Score=68.68 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=99.5
Q ss_pred CCCCCEEEECC--CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH-HH--HHHCCCCCEEEECCH-HHHHHHHHHHCCCCC
Q ss_conf 45880899818--9989999999999987598621000013566-76--521066655750422-332343310000123
Q gi|254780563|r 24 NTTKYLTLYTD--QNQSVMLPIIHSFEERTGVKISPIYTSSIQR-PP--ITQGSPVDVIITKDE-TSLALNEDLLHKLPA 97 (195)
Q Consensus 24 ~~~~~lvVYs~--~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~-~~--~~~~~~~d~~~~~d~-~~l~~~~~~l~~~~~ 97 (195)
.++++|+|+.. ...+.+++++++|++++||+|++...+.... +. ...++..|+++.... .......|++.++..
T Consensus 2 ~eeg~ltvW~~~~~~~~~l~e~~~~Fe~~~gI~V~i~~~~d~~~kl~~~~asG~~PDVi~~~~~~~~~~~~~G~l~dL~~ 81 (487)
T 1hsj_A 2 IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITP 81 (487)
T ss_dssp CCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHTTCSCSEEEEETTTHHHHHHHTCBCCBCC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCCC
T ss_conf 97628999967983279999999997527295899995887999999998679998599999188999998889411893
Q ss_pred CCC--CCCCCCCCC---CCCC--CCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC----HHHCCEEEECCCCCCHHHHHH
Q ss_conf 422--234720001---2222--23443450588873344013445578888408----667685996289830499999
Q gi|254780563|r 98 HLI--KKNSFVLKN---ENKK--LMRISFDTQVLAYSTKRIKIADLPKSVFDLTN----AQWKKRLSIAPNNISFHRLLN 166 (195)
Q Consensus 98 ~~~--~~~~~~~~~---~~~~--~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~----p~~kG~i~~~~~~~s~~~~~~ 166 (195)
... +...+...+ .+|. .+|+.....+++||++.+. ++|++|+||.+ .+-+|...+..+.........
T Consensus 82 ~~~~~d~~~~~~~~~~~~dGk~YgvP~~~~~~~l~YNkdl~~--~~P~Twdel~~~ak~~~~~g~~~~~~~~~~~~~~~~ 159 (487)
T 1hsj_A 82 DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP 159 (487)
T ss_dssp CHHHHTTBCHHHHHHTEETTEECEEEEEEECCEEEEEGGGCS--SCCSBSTTSHHHHHHHTTTTCEEECCCSSSHHHHHH
T ss_pred CHHHHHHCCHHHHHHCEECCEEEEEEECCCCEEEEEECCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 654475458888964369998999983154069999740024--786036677888888752156663146776511078
Q ss_pred HHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999608---------------------6999999999860887056
Q gi|254780563|r 167 TMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 167 a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
.+.+..| ...+.+|++.|..++...+
T Consensus 160 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~ 206 (487)
T 1hsj_A 160 LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 206 (487)
T ss_dssp HHHHTTCCSEEECSSSEEEEEETTSSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99871772433035565555433377889899999999997389885