HHsearch results for GI: 254780563 and protein with PDBid: 1mh3_A

>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.96  E-value=1.1e-08  Score=67.95  Aligned_cols=167  Identities=15%  Similarity=0.148  Sum_probs=98.7

Q ss_pred             CCCCCEEEECCC--CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEEC-CHHHHHHHHHHHCCCCC
Q ss_conf             458808998189--98999999999998759862100001356676---5210666557504-22332343310000123
Q gi|254780563|r   24 NTTKYLTLYTDQ--NQSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITK-DETSLALNEDLLHKLPA   97 (195)
Q Consensus        24 ~~~~~lvVYs~~--~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~-d~~~l~~~~~~l~~~~~   97 (195)
                      .++++|+|+.+.  ..+.+++++++||+++||+|++...+.....+   ...++..|++... +........|++.++..
T Consensus         2 ~eeg~ltvW~~~~~~~~~l~e~~~~Fe~~~gI~V~~~~~~~~~~kl~t~~~sg~~PDV~~~~~~~~~~~~~~g~l~dL~~   81 (421)
T 1mh3_A            2 IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITP   81 (421)
T ss_dssp             CCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCCC
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCCC
T ss_conf             87648999967982489999999997226296799985888999999998669998699999189999998789330891


Q ss_pred             CCC--CCCCCCCCC---CCCCC--CCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC--H--HHCCEEEECCCCCCHHHHHH
Q ss_conf             422--234720001---22222--3443450588873344013445578888408--6--67685996289830499999
Q gi|254780563|r   98 HLI--KKNSFVLKN---ENKKL--MRISFDTQVLAYSTKRIKIADLPKSVFDLTN--A--QWKKRLSIAPNNISFHRLLN  166 (195)
Q Consensus        98 ~~~--~~~~~~~~~---~~~~~--~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~--p--~~kG~i~~~~~~~s~~~~~~  166 (195)
                      ...  +...+...+   .+|..  +|+.....++.||++.+.  ++|++|+||.+  .  +-+|...+.-..........
T Consensus        82 ~~~~~d~~~~~~~~~~~~dGk~ygvP~~~~~~~~~Ynkdl~~--~~P~Twdel~~~a~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
T 1mh3_A           82 DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP  159 (421)
T ss_dssp             CHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHH
T ss_pred             CHHHHHHCCHHHHHHCEECCEEEECCEEECCEEEEECCCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             633365558888975579999972223511147997100034--784147899999877531487762057775332589


Q ss_pred             HHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf             9999608---------------------6999999999860887056
Q gi|254780563|r  167 TMEQTPN---------------------KTVVQDFIKNITANEILTK  192 (195)
Q Consensus       167 a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~  192 (195)
                      .+....|                     ...+.+|++.|..++...+
T Consensus       160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~  206 (421)
T 1mh3_A          160 LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA  206 (421)
T ss_dssp             HHHHTTCEEEEECSSSEEEEEEETTSHHHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99972773002345665544455577889999999999997489885