HHsearch results for GI: 254780563 and protein with PDBid: 2hxw_A
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=99.32 E-value=2e-12 Score=89.40 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=92.1
Q ss_pred CEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHH-HHHHHCCCCCCCCCCCCC
Q ss_conf 089981899-899999999999875986210000135667652106665575042233234-331000012342223472
Q gi|254780563|r 28 YLTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSLAL-NEDLLHKLPAHLIKKNSF 105 (195)
Q Consensus 28 ~lvVYs~~~-~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~d~~~l~~-~~~~l~~~~~~~~~~~~~ 105 (195)
||+||++.+ ...++++.++||++|||+|+++.+++.+.....++ .+|+++..+...... .++....
T Consensus 2 ei~v~~~~~~~~~~~~l~~~Fek~tGi~V~~~~~~s~~l~~~i~~-~aDv~~~~~~~~~~~~~~~~~~~----------- 69 (237)
T 2hxw_A 2 DVNLYGPGGPHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAKK-DADILFGASDQSALAIASDFGKD----------- 69 (237)
T ss_dssp CEEEEECSSTHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHH-HCSEEEESSHHHHHHHHTTSGGG-----------
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHC-CCCEEEECCCHHHHHHHHHHCCC-----------
T ss_conf 799994789789999999999880197599997782999999765-99999984604789998861046-----------
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCH--HHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 00012222234434505888733440134455788884086676859962898304--9999999996086999999999
Q gi|254780563|r 106 VLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISF--HRLLNTMEQTPNKTVVQDFIKN 183 (195)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~--~~~~~a~~~~~G~~~~~~~l~~ 183 (195)
.....+.++.....++++|.+. ...|++|+||++|.+|+.+..+.+..+. ..+.. ...+.....++++.
T Consensus 70 ---~~~~~~~~~~~~~~vl~~~~~~---~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 140 (237)
T 2hxw_A 70 ---FNVSKIKPLYFREAIILTQKGN---PLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWE---DMIGRTQDIKTIQN 140 (237)
T ss_dssp ---CCGGGCEEEEEEEEEEEESTTC---TTCCCSHHHHHHSCCCEEECCCTTSSCCTTTTHHH---HHHHTTCCHHHHHH
T ss_pred ---CCCCCEEEEEEEEEEEEEECCC---CCCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCHHHHHH
T ss_conf ---7777279999432999997999---76765235664203106651368873222799999---98622220889997
Q ss_pred HHHCCC
Q ss_conf 860887
Q gi|254780563|r 184 ITANEI 189 (195)
Q Consensus 184 l~~N~~ 189 (195)
+++|.+
T Consensus 141 ~~~~~~ 146 (237)
T 2hxw_A 141 FRNNIV 146 (237)
T ss_dssp HHHTEE
T ss_pred HHCCCE
T ss_conf 435705