HHsearch results for GI: 254780563 and protein with PDBid: 3kn3_A
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, structural genomics, PSI-2; HET: GTT CIT; 2.41A {Wolinella succinogenes}
Probab=98.70 E-value=5.2e-08 Score=64.18 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCCCCEEEECCCCH---HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHH--HHHHCCCCCC
Q ss_conf 45880899818998---999999999998759862100001356676521066655750422332343--3100001234
Q gi|254780563|r 24 NTTKYLTLYTDQNQ---SVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSLALN--EDLLHKLPAH 98 (195)
Q Consensus 24 ~~~~~lvVYs~~~~---~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~d~~~l~~~--~~~l~~~~~~ 98 (195)
+.+.||+|+++.+. .+++++.++||++|||+|+++.+++.+.+.+.+....|+++..+....... .+......
T Consensus 2 ~aa~~l~i~~~~S~~~~~l~~~l~~~Fe~~tgikV~~~~~~Sg~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (242)
T 3kn3_A 2 NAAAELRMATTTSTDNTGLLDVLAPAYKKDTGVDLKWVAVGTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRT-- 79 (242)
T ss_dssp --CCEEEEEEEHHHHHHTHHHHHHHHHHHHHSCEEEEEEECHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEE--
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCC--
T ss_conf 977568999972775231499999999998697799997784999998864788554304505479998715774123--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEE-ECCCCCCHH
Q ss_conf 2223472000122222344345058887334401344557888840866768599-628983049
Q gi|254780563|r 99 LIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLS-IAPNNISFH 162 (195)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~-~~~~~~s~~ 162 (195)
.......+++++.. ...+..+..|.|++++.+.+++. .+++.+++.
T Consensus 80 -----------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 126 (242)
T 3kn3_A 80 -----------------PVMYNDFVIIGNPS-FKQKFTGMSVAEAFKLIEKEQVKFVSRGDKSGT 126 (242)
T ss_dssp -----------------EEECSCEEEEECTH-HHHHHTTCCHHHHHHHHHHHTCCEEECCSSCHH
T ss_pred -----------------CHHHCCEEEEEECC-CCCCCCCCHHHHHHHHHHCCCCEECCCCCCHHH
T ss_conf -----------------11002303775247-765444311455433554057235589884599