Query gi|254780563|ref|YP_003064976.1| extracellular solute-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 195
No_of_seqs 106 out of 2115
Neff 9.0
Searched_HMMs 23785
Date Tue May 31 18:51:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780563.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xvx_A YFUA; periplasmic iron 100.0 3E-28 1.3E-32 179.6 13.7 166 24-189 2-173 (312)
2 1nnf_A Iron-utilization peripl 99.9 2.2E-24 9.1E-29 157.6 13.8 163 28-190 1-171 (309)
3 2qry_A Thiamine-binding peripl 99.9 1.7E-24 7E-29 158.3 10.5 175 12-190 8-195 (330)
4 3e13_X Putative iron-uptake AB 99.9 1.9E-23 8.1E-28 152.2 13.2 167 26-192 1-175 (322)
5 1q35_A Iron binding protein FB 99.9 1E-22 4.3E-27 148.0 13.3 166 26-191 1-173 (320)
6 2pt1_A Iron transport protein; 99.9 7.2E-21 3E-25 137.5 12.3 167 22-189 14-188 (334)
7 2voz_A FUTA2, periplasmic iron 99.8 1.1E-20 4.5E-25 136.5 11.1 183 1-189 5-198 (346)
8 1y9u_A Putative iron binding p 99.8 7.2E-20 3E-24 131.8 11.8 158 23-183 2-167 (323)
9 3c9h_A ABC transporter, substr 99.8 2.6E-19 1.1E-23 128.6 12.9 188 2-190 1-211 (355)
10 2v84_A Spermidine/putrescine A 99.7 1.5E-17 6.1E-22 118.6 9.0 151 17-172 15-178 (343)
11 1pot_A POTD, spermidine/putres 99.7 3.6E-17 1.5E-21 116.4 7.1 162 25-188 2-183 (325)
12 1a99_A POTF, putrescine-bindin 99.5 1.1E-14 4.7E-19 102.2 5.3 164 24-188 1-195 (344)
13 3gzg_A Molybdate-binding perip 99.4 1.4E-12 5.8E-17 90.3 9.9 140 15-171 11-156 (253)
14 1sbp_A Sulfate-binding protein 99.3 1.5E-11 6.2E-16 84.4 12.1 144 32-190 10-168 (310)
15 2hxw_A Major antigenic peptide 99.3 2E-12 8.2E-17 89.4 6.3 141 28-189 2-146 (237)
16 1amf_A Molybdate transport pro 99.2 4.6E-11 1.9E-15 81.6 8.0 134 26-177 2-141 (233)
17 3mq9_A Bone marrow stromal ant 99.1 5.5E-10 2.3E-14 75.4 10.8 170 20-192 12-220 (471)
18 3kjt_A Maltose-binding peripla 99.1 7E-10 3E-14 74.8 10.7 170 21-192 1-208 (372)
19 3h3g_A Fusion protein of malto 99.1 2E-09 8.4E-14 72.2 11.8 169 22-192 2-208 (539)
20 1r6z_P Chimera of maltose-bind 99.1 4.1E-09 1.7E-13 70.5 12.6 167 23-191 2-206 (509)
21 3dm0_A Maltose-binding peripla 99.0 3.3E-09 1.4E-13 71.0 11.9 166 24-192 2-206 (694)
22 3lr1_A Tungstate ABC transport 99.0 7.4E-10 3.1E-14 74.7 8.6 122 24-164 2-129 (236)
23 2vgq_A Maltose-binding peripla 99.0 5.2E-09 2.2E-13 69.9 12.5 169 22-192 15-221 (477)
24 3muq_A Uncharacterized conserv 99.0 4.1E-10 1.7E-14 76.1 6.7 133 24-174 2-141 (237)
25 2nvu_B Maltose binding protein 99.0 2.6E-09 1.1E-13 71.6 10.6 167 23-191 5-209 (805)
26 3iot_A Maltose-binding protein 99.0 3.9E-09 1.7E-13 70.6 10.5 167 24-192 2-206 (449)
27 3f5f_A Maltose-binding peripla 99.0 3.2E-09 1.3E-13 71.1 9.7 121 24-146 2-135 (658)
28 1y4c_A Maltose binding protein 99.0 1.4E-08 5.8E-13 67.5 12.7 167 24-192 2-206 (494)
29 1hsj_A Fusion protein consisti 99.0 8.4E-09 3.5E-13 68.7 11.5 167 24-192 2-206 (487)
30 3k01_A Acarbose/maltose bindin 99.0 6.5E-09 2.7E-13 69.3 10.7 165 26-190 27-234 (412)
31 2zxt_A Maltose-binding peripla 99.0 3.4E-09 1.4E-13 70.9 9.2 167 24-192 2-206 (465)
32 1mh3_A Maltose binding-A1 home 99.0 1.1E-08 4.7E-13 68.0 11.8 167 24-192 2-206 (421)
33 2heu_A Sugar ABC transporter, 99.0 3.1E-09 1.3E-13 71.2 8.9 129 17-146 9-155 (401)
34 3o3u_N Maltose-binding peripla 98.9 1.1E-08 4.4E-13 68.1 11.4 166 25-192 3-206 (581)
35 1atg_A MODA, periplasmic molyb 98.9 8.3E-09 3.5E-13 68.7 10.6 123 28-172 1-129 (231)
36 3csg_A MBP, maltose-binding pr 98.9 1.9E-08 7.8E-13 66.7 12.1 165 26-192 2-204 (461)
37 2zyo_A Solute-binding protein; 98.9 2.8E-08 1.2E-12 65.7 13.0 168 21-190 13-224 (397)
38 2gha_A Maltose ABC transporter 98.9 2.4E-08 1E-12 66.1 12.3 165 26-192 2-207 (382)
39 3i3v_A Probable secreted solut 98.9 6.2E-08 2.6E-12 63.7 12.9 170 22-191 3-222 (405)
40 3h4z_A Maltose-binding peripla 98.8 6.8E-08 2.9E-12 63.5 12.2 167 24-192 2-206 (568)
41 1twy_A ABC transporter, peripl 98.8 1.7E-08 7E-13 67.0 9.1 148 2-169 3-163 (290)
42 2xd3_A MALX, maltose/maltodext 98.8 1E-08 4.2E-13 68.2 7.4 123 26-151 34-170 (416)
43 1urs_A Maltose-binding protein 98.8 4.8E-08 2E-12 64.4 10.5 163 26-190 29-228 (402)
44 2gh9_A Maltose/maltodextrin-bi 98.7 2.6E-07 1.1E-11 60.2 12.9 116 28-145 2-136 (386)
45 3kn3_A Putative periplasmic pr 98.7 5.2E-08 2.2E-12 64.2 8.0 119 24-162 2-126 (242)
46 3omb_A Extracellular solute-bi 98.6 4.3E-08 1.8E-12 64.6 4.4 106 39-145 56-190 (535)
47 1elj_A Maltodextrin-binding pr 98.6 1.8E-07 7.6E-12 61.1 7.4 124 24-149 3-145 (381)
48 2z8f_A Galacto-N-biose/lacto-N 98.5 6.1E-07 2.5E-11 58.1 9.1 153 38-191 31-226 (412)
49 1eu8_A Trehalose/maltose bindi 98.3 1.6E-06 6.9E-11 55.6 6.8 121 25-145 2-150 (409)
50 2w7y_A FCSSBP, probable sugar 98.2 3.6E-06 1.5E-10 53.6 7.9 133 27-159 38-206 (430)
51 2b3f_A Glucose-binding protein 98.1 3.2E-06 1.3E-10 54.0 5.1 117 28-145 2-147 (400)
52 3cvg_A Putative metal binding 98.1 3.7E-06 1.6E-10 53.6 4.8 138 19-163 12-158 (294)
53 2uvj_A TOGB, ABC type periplas 98.0 1.6E-05 6.7E-10 50.0 7.7 112 37-149 19-152 (408)
54 3k6v_A Solute-binding protein 97.9 4.5E-06 1.9E-10 53.1 3.0 72 25-96 41-118 (354)
55 3cfx_A UPF0100 protein MA_0280 97.9 3.1E-06 1.3E-10 54.0 2.1 61 25-85 3-67 (296)
56 3thi_A Protein (thiaminase I); 97.8 2.1E-05 9E-10 49.2 5.2 114 28-144 2-131 (371)
57 3cfz_A UPF0100 protein MJ1186; 97.5 0.00014 6.1E-09 44.5 5.6 77 26-102 4-86 (292)
58 3cij_A UPF0100 protein AF_0094 97.3 0.00037 1.5E-08 42.2 5.9 72 26-97 4-81 (295)
59 3cg1_A UPF0100 protein PF0080; 97.3 0.00018 7.5E-09 44.0 3.9 74 25-98 3-87 (296)
60 1j1n_A ALGQ2; alginate, suger 97.1 0.0004 1.7E-08 42.0 4.2 121 25-145 9-162 (492)
61 2v25_A Major cell-binding fact 96.6 0.013 5.4E-07 33.4 8.3 80 1-80 2-108 (259)
62 1us5_A Putative GLUR0 ligand b 96.1 0.062 2.6E-06 29.5 10.5 148 2-174 1-156 (314)
63 2rin_A Putative glycine betain 93.9 0.19 8.1E-06 26.7 7.0 125 22-161 2-131 (298)
64 1p99_A Hypothetical protein PG 93.4 0.35 1.5E-05 25.2 9.0 56 25-81 37-94 (295)
65 3myu_A High affinity transport 92.8 0.43 1.8E-05 24.7 7.8 65 21-85 2-76 (344)
66 1xs5_A 29 kDa protein, membran 92.5 0.48 2E-05 24.4 9.6 56 26-81 2-59 (241)
67 3n5l_A Binding protein compone 86.1 1.6 6.5E-05 21.5 8.0 115 26-159 3-126 (310)
68 2fyi_A HTH-type transcriptiona 85.5 1.7 7E-05 21.3 8.5 57 24-80 11-70 (228)
69 3gxa_A Outer membrane lipoprot 76.2 3.6 0.00015 19.4 8.3 44 20-63 16-61 (275)
70 1ixh_A Phosphate-binding prote 70.2 5.1 0.00021 18.6 8.6 49 28-76 3-52 (321)
71 3g41_A Amino acid ABC transpor 67.5 5.8 0.00024 18.3 4.5 62 19-80 2-76 (246)
72 2hzl_A Trap-T family sorbitol/ 67.1 5.9 0.00025 18.2 6.3 24 38-61 49-74 (365)
73 3jv9_A OXYR, transcriptional r 62.5 7.3 0.00031 17.7 5.5 54 26-79 3-59 (219)
74 1pc3_A Phosphate-binding prote 59.9 8.1 0.00034 17.4 8.8 41 26-66 26-68 (350)
75 1xt8_A Putative amino-acid tra 57.9 8.8 0.00037 17.2 7.3 43 39-81 69-114 (292)
76 2ql3_A Probable transcriptiona 54.0 10 0.00043 16.8 7.0 55 26-80 4-61 (209)
77 3ksx_A Nitrate transport prote 48.3 13 0.00053 16.3 11.6 122 25-175 27-156 (324)
78 1sw5_A Osmoprotection protein 47.0 4.8 0.0002 18.7 0.9 56 23-78 2-61 (275)
79 2qgu_A Probable signal peptide 46.5 6.3 0.00027 18.0 1.4 21 1-21 1-21 (211)
80 3del_B Arginine binding protei 46.5 14 0.00057 16.2 4.4 61 20-80 4-77 (242)
81 2hxr_A HTH-type transcriptiona 45.8 14 0.00058 16.1 9.2 55 25-79 28-85 (238)
82 3ho7_A OXYR; beta-alpha-barrel 44.1 15 0.00062 15.9 6.2 55 25-79 9-66 (232)
83 3k2d_A ABC-type metal ION tran 42.1 16 0.00067 15.8 5.7 54 25-78 4-60 (237)
84 2rfv_A Methionine gamma-lyase; 36.7 19 0.00082 15.3 5.3 45 25-69 101-145 (398)
85 2b0t_A NADP isocitrate dehydro 35.5 20 0.00085 15.2 3.7 33 29-61 3-41 (738)
86 2pvu_A ARTJ; basic amino acid 34.7 21 0.00088 15.1 4.7 55 26-80 41-107 (272)
87 3ix1_A N-formyl-4-amino-5-amin 33.1 22 0.00094 14.9 8.3 16 47-62 28-43 (302)
88 1itw_A Isocitrate dehydrogenas 33.0 22 0.00094 14.9 3.9 33 29-61 5-43 (741)
89 2iee_A ORF2, probable ABC tran 31.9 23 0.00098 14.8 8.2 42 39-80 49-90 (271)
90 1a9x_B Carbamoyl phosphate syn 31.2 21 0.00089 15.0 2.1 23 138-160 222-244 (379)
91 1wdn_A GLNBP, glutamine bindin 30.2 25 0.001 14.6 4.1 43 38-80 26-68 (226)
92 3l6g_A Betaine ABC transporter 28.2 27 0.0011 14.4 5.0 53 27-80 2-57 (256)
93 3eki_A High affinity transport 28.1 22 0.00091 15.0 1.7 33 137-173 237-271 (403)
94 3fd3_A Chromosome replication 28.0 27 0.0012 14.4 2.8 42 40-81 17-58 (208)
95 1w5c_T Cytochrome C-550; photo 27.6 9.6 0.0004 17.0 -0.2 13 1-13 1-13 (163)
96 3oxn_A Putative transcriptiona 25.9 30 0.0013 14.2 5.8 61 20-80 12-75 (241)
97 1i6a_A OXYR, hydrogen peroxide 25.9 30 0.0013 14.2 4.5 53 26-78 4-59 (219)
98 2zki_A 199AA long hypothetical 25.0 31 0.0013 14.1 3.1 37 24-61 3-41 (199)
99 1gc0_A Methionine gamma-lyase; 24.5 32 0.0013 14.0 3.9 54 25-78 102-155 (398)
100 2a3m_A COG3005: nitrate/TMAO r 24.5 14 0.0006 16.0 0.2 14 2-15 1-14 (130)
101 2jep_A Xyloglucanase; family 5 24.2 13 0.00055 16.2 0.0 15 41-56 72-86 (395)
102 2yz3_A Metallo-beta-lactamase; 23.9 33 0.0014 14.0 3.6 26 34-59 86-111 (266)
103 2fgx_A Putative thioredoxin; N 23.7 33 0.0014 14.0 4.1 43 23-65 26-71 (107)
104 3hhf_B Transcriptional regulat 23.1 34 0.0014 13.9 2.0 40 25-64 5-47 (213)
105 3b55_A Succinoglycan biosynthe 22.7 35 0.0015 13.8 2.1 45 2-46 1-48 (451)
106 1ixc_A CBNR, LYSR-type regulat 22.0 36 0.0015 13.7 5.2 55 26-80 90-147 (294)
107 1y0g_A Protein YCEI; lipid bin 21.7 16 0.00069 15.7 0.1 15 2-16 1-15 (191)
108 3ndn_A O-succinylhomoserine su 21.3 37 0.0016 13.7 6.4 55 24-78 117-171 (414)
109 2fsv_C NAD(P) transhydrogenase 21.2 37 0.0016 13.7 2.4 44 34-78 60-110 (203)
No 1
>1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=99.96 E-value=3e-28 Score=179.59 Aligned_cols=166 Identities=21% Similarity=0.393 Sum_probs=146.2
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HH-HHCCCCCEEEECCHHHH--HHHHHHHCCCCC
Q ss_conf 4588089981899899999999999875986210000135667---65-21066655750422332--343310000123
Q gi|254780563|r 24 NTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRP---PI-TQGSPVDVIITKDETSL--ALNEDLLHKLPA 97 (195)
Q Consensus 24 ~~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~---~~-~~~~~~d~~~~~d~~~l--~~~~~~l~~~~~ 97 (195)
+.+++|+|||+++++.+++++++||++|||+|+++.+++.+.. .. ++++++|++++.+...+ ..+.+++.++.+
T Consensus 2 ~~~~~lvVYs~~~e~~~~~l~~~FeketGIkV~~~~~~~~~~~~ki~aeg~~~~~Dv~~~~~~~~~~~~~~~gl~~~~~~ 81 (312)
T 1xvx_A 2 SNDSGIVVYNAQHENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMVLVDNAKLFAPLDA 81 (312)
T ss_dssp CCCSCEEEEECSCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESSSHHHHHHHHTTCBCCCCH
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCHHHHHHH
T ss_conf 98984999979887799999999888659889999898099999999638999963999887789888775152454311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHHHHHHHHHHHCHHHH
Q ss_conf 42223472000122222344345058887334401344557888840866768599628983049999999996086999
Q gi|254780563|r 98 HLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVV 177 (195)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~~~~a~~~~~G~~~~ 177 (195)
....++++.+++++++|+++.....+++||++.++..++|+||+||.+|.++|+++++.++.++..++..+....|.+.+
T Consensus 82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~~~P~t~~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~ 161 (312)
T 1xvx_A 82 VTQAQVAQEYRPEHGRWTGIAARSTVFVYNPEKISEAELPKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKGEKAT 161 (312)
T ss_dssp HHHHHBCGGGSCSSSSCEEEEEEEEEEEECTTTSCGGGSCSSGGGGGSGGGTTSEEECTTSHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHCCCCCEEEEEEEEEEEEEECHHHCCCCCCCCCHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00222236526679808999864699997100146566987899871402124210120145688998876641335679
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999860887
Q gi|254780563|r 178 QDFIKNITANEI 189 (195)
Q Consensus 178 ~~~l~~l~~N~~ 189 (195)
+++++.++.|..
T Consensus 162 ~~~~~~~~~~~~ 173 (312)
T 1xvx_A 162 LEWLKAMKTNFT 173 (312)
T ss_dssp HHHHHHHHHHEE
T ss_pred HHHHHHHHHCCC
T ss_conf 999986310441
No 2
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 1qvs_A 2o6a_A 2o68_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=99.92 E-value=2.2e-24 Score=157.60 Aligned_cols=163 Identities=20% Similarity=0.349 Sum_probs=138.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH----HHHCCCCCEEEECCHHHH--HHHHHHHCCCCCCCCC
Q ss_conf 0899818998999999999998759862100001356676----521066655750422332--3433100001234222
Q gi|254780563|r 28 YLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRPP----ITQGSPVDVIITKDETSL--ALNEDLLHKLPAHLIK 101 (195)
Q Consensus 28 ~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~----~~~~~~~d~~~~~d~~~l--~~~~~~l~~~~~~~~~ 101 (195)
+|+|||+.+++.+++++++||++|||||+++..++.+... ++.+.++||+++.+...+ +.+.|++.+++.+..+
T Consensus 1 ~~~vys~~~~~~~~~i~~~Fe~~tGIkV~~~~~~~~~~~~kl~aeg~~~~~DV~~~~~~~~~~~~~~~gll~~~~~~~~~ 80 (309)
T 1nnf_A 1 DITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQ 80 (309)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHSCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESCGGGHHHHHHTTCBCCCCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 97999598988999999999885597799998970999999997468999878996878999999867986644423342
Q ss_pred CCCCCC--CCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHHHHHHHHHHHCHHHHHH
Q ss_conf 347200--012222234434505888733440134455788884086676859962898304999999999608699999
Q gi|254780563|r 102 KNSFVL--KNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQD 179 (195)
Q Consensus 102 ~~~~~~--~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~~~~a~~~~~G~~~~~~ 179 (195)
...... .+.++++++......++.||++.+....+|.+|+||++++|++++.+++++..+..+....+...|.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~~~p~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (309)
T 1nnf_A 81 QTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALN 160 (309)
T ss_dssp TTCCTTCCCCTTSCCEEEEEEEEEEEEETTTCCGGGSCSSGGGGGSGGGTTTEEECTTSHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHCCCCCCCCEEEEEEEEEEEEEEHHHCCCCCCCCCHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 21022124466762788774125787523330354454668874160532033347753016777778988507388999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99998608870
Q gi|254780563|r 180 FIKNITANEIL 190 (195)
Q Consensus 180 ~l~~l~~N~~~ 190 (195)
++++|+.|+.+
T Consensus 161 ~~~~l~~~~~~ 171 (309)
T 1nnf_A 161 WLKGLKENGKL 171 (309)
T ss_dssp HHHHHHHHEEE
T ss_pred HHHHHHHHHHC
T ss_conf 99998753101
No 3
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=99.91 E-value=1.7e-24 Score=158.26 Aligned_cols=175 Identities=15% Similarity=0.134 Sum_probs=125.5
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCHHH----HHHHHHHHHHHCCCCCCCCCHH-HHHH---HHH-HHCCCCCEEEECCH
Q ss_conf 9999998612444588089981899899----9999999998759862100001-3566---765-21066655750422
Q gi|254780563|r 12 LLCGFTEAFSTENTTKYLTLYTDQNQSV----MLPIIHSFEERTGVKISPIYTS-SIQR---PPI-TQGSPVDVIITKDE 82 (195)
Q Consensus 12 l~~~~~~~~~~~~~~~~lvVYs~~~~~~----~~~~~~~Fek~tgIkV~~~~~~-~~~~---~~~-~~~~~~d~~~~~d~ 82 (195)
+..+..+.+++.+.+++|+||++.++.. .+.++++||++|||+|+++..+ +.+. +.. .++.++|++++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~l~Vy~~~~~~~~~~~~~~i~~~FE~~~gi~V~~~~~~s~~~ll~kl~~e~~~~~~DVv~~~~~ 87 (330)
T 2qry_A 8 HHHSSGLVPRGSHMKPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDN 87 (330)
T ss_dssp --------------CCEEEEEECHHHHSTTSSHHHHHHHHHTTSCSEEEEEECSCHHHHHHHHHHHGGGCCCSEEEEEEG
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCH
T ss_conf 34234566556567987999978765535577779999999987978999958998999999997279998329997567
Q ss_pred HHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCC
Q ss_conf 332--343310000123422234720001222223443450588873344013445578888408667685996289830
Q gi|254780563|r 83 TSL--ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNIS 160 (195)
Q Consensus 83 ~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s 160 (195)
..+ ....+++.++..+...... .....+++++++.....+++||++.+. ++|+||+||++|+|+|||+++++..+
T Consensus 88 ~~~~~~~~~gl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~yn~~~~~--~~p~s~~dL~~p~~~gki~~~~~~~~ 164 (330)
T 2qry_A 88 NLLDAASKTGLFAKSGVAADAVNV-PGGWNNDTFVPFDYGYFAFVYDKNKLK--NPPQSLKELVESDQNWRVIYQDPRTS 164 (330)
T ss_dssp GGHHHHHHHTCBCCCCCCGGGCCC-TTCCCCSSCEEEEEEEEEEEEETTTCS--SCCSSHHHHHHCSSCCCEEEECTTTC
T ss_pred HHHHHHHHCCCCCCCCCCHHHHCC-CHHHCCCCEEEECCCEEEEEECCCCCC--CCCCCHHHHHHCCCCCEEEECCCCCC
T ss_conf 789999874752124576333036-423236650320452478874332256--89977899851402412574277534
Q ss_pred --HHHHHHHHHHHHCHHHHHHHHHHHHHCCCC
Q ss_conf --499999999960869999999998608870
Q gi|254780563|r 161 --FHRLLNTMEQTPNKTVVQDFIKNITANEIL 190 (195)
Q Consensus 161 --~~~~~~a~~~~~G~~~~~~~l~~l~~N~~~ 190 (195)
+..++.++...+|++ ++++|++++.|+..
T Consensus 165 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~ 195 (330)
T 2qry_A 165 TPGLGLLLWMQKVYGDD-APQAWQKLAKKTVT 195 (330)
T ss_dssp HHHHHHHHHHHHHHGGG-HHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHCCC
T ss_conf 77899999999857956-99999999872676
No 4
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} PDB: 1y4t_A
Probab=99.90 E-value=1.9e-23 Score=152.18 Aligned_cols=167 Identities=20% Similarity=0.311 Sum_probs=135.0
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---H-HHHCCCCCEEEECCHHHHH--HHHHHHCCCCCCC
Q ss_conf 88089981899899999999999875986210000135667---6-5210666557504223323--4331000012342
Q gi|254780563|r 26 TKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRP---P-ITQGSPVDVIITKDETSLA--LNEDLLHKLPAHL 99 (195)
Q Consensus 26 ~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~---~-~~~~~~~d~~~~~d~~~l~--~~~~~l~~~~~~~ 99 (195)
++||+|||+.++...++++++|||+|||+|+++..++.+.. . ++.+.++|++++.+..... ...+.+.+++...
T Consensus 1 ~~ev~vy~~~~~~~~~~l~~~Fek~tGIkV~~~~~~s~~~~~kl~ae~~~~~~DVv~~~~~~~~~~~~~~~~~~~~~~~~ 80 (322)
T 3e13_X 1 ASELNIYSARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKY 80 (322)
T ss_dssp -CEEEEEECCCCTHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHGGGCCCCEEEESCHHHHHHHHHTTCEECCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC
T ss_conf 97589987988552699999999976988999989819999999964789996399958699999998656656456621
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCC-HHHHHHHHHHHHCHHHH
Q ss_conf 223-4720001222223443450588873344013445578888408667685996289830-49999999996086999
Q gi|254780563|r 100 IKK-NSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNIS-FHRLLNTMEQTPNKTVV 177 (195)
Q Consensus 100 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s-~~~~~~a~~~~~G~~~~ 177 (195)
..+ ++...++.+++++++.....+++||++......+|++|+||++|.++|++++++.+++ +..++.++....|++..
T Consensus 81 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~n~~~~~~~~~p~tw~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (322)
T 3e13_X 81 LEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYSKTLLASIIANDGNKEA 160 (322)
T ss_dssp HHHHSCGGGBCTTSSCEEEEEEEEEEEEETTSCCCCTTCCSGGGGGSGGGTTCEECCCTTSHHHHHHHHHHHHHHCHHHH
T ss_pred HHHCCCHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 33315201037775246552230578751333345789999999841875387134772013678899999863286017
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 999999860887056
Q gi|254780563|r 178 QDFIKNITANEILTK 192 (195)
Q Consensus 178 ~~~l~~l~~N~~~~~ 192 (195)
.++++.+..|....+
T Consensus 161 ~~~~~~~~~~~~~~~ 175 (322)
T 3e13_X 161 KAWAKGVLENLATNP 175 (322)
T ss_dssp HHHHHHHHHHBSSSC
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999998876403355
No 5
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Probab=99.89 E-value=1e-22 Score=148.05 Aligned_cols=166 Identities=20% Similarity=0.351 Sum_probs=131.7
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH--HHHH-HHHCCCCCEEEECCHHHHH--HHHHHHCCCCCCC-
Q ss_conf 88089981899899999999999875986210000135--6676-5210666557504223323--4331000012342-
Q gi|254780563|r 26 TKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSI--QRPP-ITQGSPVDVIITKDETSLA--LNEDLLHKLPAHL- 99 (195)
Q Consensus 26 ~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~--~~~~-~~~~~~~d~~~~~d~~~l~--~~~~~l~~~~~~~- 99 (195)
++||+|||+++++++++++++|||+|||+|+++.+++. +++. ++.+.++|++++.+...+. ...+.+.+.....
T Consensus 1 a~el~vYt~~~~~~~~~li~~Fek~tGIkV~~~~~~~~~~~kl~ae~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (320)
T 1q35_A 1 ANEVNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVL 80 (320)
T ss_dssp CCEEEEEESSCGGGTHHHHHHHHHHHCCEEEEEECC-CCHHHHHHHGGGCCCCEEEESCHHHHHHHHHTTCBCCCCCHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCHHHH
T ss_conf 97589987988768999999998866978999969989999999647999988899797899999885275433421015
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHH-HHHHHHHHHHCHHHHH
Q ss_conf 223472000122222344345058887334401344557888840866768599628983049-9999999960869999
Q gi|254780563|r 100 IKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFH-RLLNTMEQTPNKTVVQ 178 (195)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~-~~~~a~~~~~G~~~~~ 178 (195)
...++..+++.+++++++.....++.||+++++....|++|.||++|++++++.+.++..++. .++..+....+.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (320)
T 1q35_A 81 EKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTK 160 (320)
T ss_dssp HHHSCGGGBCTTSSCEEEEEEEEEEEEETTTTCSCCTTCCGGGGGSGGGTTCEECSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 55340443267633762677777888503212357898767775143532862446510455999999999851871267
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999986088705
Q gi|254780563|r 179 DFIKNITANEILT 191 (195)
Q Consensus 179 ~~l~~l~~N~~~~ 191 (195)
++++.+.++....
T Consensus 161 ~~~~~~~~~~~~~ 173 (320)
T 1q35_A 161 AFLEGLKANLARK 173 (320)
T ss_dssp HHHHHHHHTBSSC
T ss_pred HHHHHHHHHHCEE
T ss_conf 8999999751500
No 6
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, periplasmic binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=99.85 E-value=7.2e-21 Score=137.52 Aligned_cols=167 Identities=17% Similarity=0.300 Sum_probs=124.1
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HH-HHCCCCCEEEECCHHHH--HHHHHHHCCC
Q ss_conf 444588089981899899999999999875986210000135667---65-21066655750422332--3433100001
Q gi|254780563|r 22 TENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRP---PI-TQGSPVDVIITKDETSL--ALNEDLLHKL 95 (195)
Q Consensus 22 ~~~~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~---~~-~~~~~~d~~~~~d~~~l--~~~~~~l~~~ 95 (195)
..++++||+|||++++..+++++++||++|||+|+++.+++.+.+ .. ..+.+.|+++..+...+ ....+.+.++
T Consensus 14 ~~~~~~~l~v~~~~~~~~~~~l~~~Fek~tGIkV~~~~~~~~~~~~kl~a~~~~~~~Dvv~~~~~~~~~~~~~~g~~~~~ 93 (334)
T 2pt1_A 14 TPGEQQEINLYSSRHYNTDNELYAKFTAETGIKVNLIEGKADELLERIKSEGANSPADVLLTVDLARLWRAEEDGIFQPV 93 (334)
T ss_dssp ----CCEEEEEESCCCTTHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHGGGCCCCEEEEESHHHHHHHHHTTCBCCC
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCC
T ss_conf 77768989999799855259999999998698799997984999999996489999858995558999999865851003
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHH-HHHHHHHHHHC
Q ss_conf 234222-3472000122222344345058887334401344557888840866768599628983049-99999999608
Q gi|254780563|r 96 PAHLIK-KNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFH-RLLNTMEQTPN 173 (195)
Q Consensus 96 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~-~~~~a~~~~~G 173 (195)
+++... .++..+++.++++++....+.++.||.+.... .+|+||+||++|+|||++.+..+..+.. ..........+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~tw~dL~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~~ 172 (334)
T 2pt1_A 94 QSEILETNVPEYLRSPDGMWFGFTKRARVIMYNKGKVKP-EELSTYEELADPKWKGRVIIRSSSNEYNQSLVASLVVADG 172 (334)
T ss_dssp CCHHHHHHSCGGGBCTTSSCEEEEEEEEEEEEETTTCCG-GGCCCSGGGGSGGGTTCBCCCCTTSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHCHHHHCCCCCCEEEEEECCEEEEEECCCCCC-CCCCCHHHHHCCHHCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 644455544475088999788777121788863244678-9989999983916459788527765259999999876236
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 6999999999860887
Q gi|254780563|r 174 KTVVQDFIKNITANEI 189 (195)
Q Consensus 174 ~~~~~~~l~~l~~N~~ 189 (195)
.....++++....|..
T Consensus 173 ~~~~~~~~~~~~~~~~ 188 (334)
T 2pt1_A 173 EESTLAWAKGFVSNFA 188 (334)
T ss_dssp HHHHHHHHHHHHHTBS
T ss_pred CCCHHHHHHHHHHHCC
T ss_conf 6204899998876326
No 7
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=99.84 E-value=1.1e-20 Score=136.51 Aligned_cols=183 Identities=16% Similarity=0.222 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHHHHHH---HHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH---HHHHH-HCCC
Q ss_conf 90259999999999999---86124445880899818998999999999998759862100001356---67652-1066
Q gi|254780563|r 1 MFKRTIYTYLLLLCGFT---EAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPIT-QGSP 73 (195)
Q Consensus 1 mmkk~~~~~l~l~~~~~---~~~~~~~~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~---~~~~~-~~~~ 73 (195)
|.||.++.....+++++ +++.+.+++++|+||++.+++..++++++||| |+++.+++.+ ++..+ .+.+
T Consensus 5 l~RR~~l~~~~a~~a~~~~~~~~~a~A~~~~l~vy~~~~~~~~~~~~~~Fek-----v~~i~~~~~~~~~kl~a~~~~~~ 79 (346)
T 2voz_A 5 ISRRTFFVGGTALTALVVANLPRRASAQSRTINLYSSRHYNTDDALYDAFGE-----VNLIEASAEELIERIQSEGANSP 79 (346)
T ss_dssp -----------------------------CEEEEEESCCCTTHHHHHHHHSE-----EEEEECCHHHHHHHHHHTGGGCC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHCEE-----EEEEECCCHHHHHHHHHCCCCCC
T ss_conf 5099999999999999998646541045997999868883226999852016-----88898782999999996478999
Q ss_pred CCEEEECCHHHHH--HHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCC
Q ss_conf 6557504223323--43310000123422-23472000122222344345058887334401344557888840866768
Q gi|254780563|r 74 VDVIITKDETSLA--LNEDLLHKLPAHLI-KKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKK 150 (195)
Q Consensus 74 ~d~~~~~d~~~l~--~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG 150 (195)
.|+++..+...+. ...+++.++..+.. ..++..+.+.++++.+....+.++.||.+.+.. .+|+||+||++|+|||
T Consensus 80 ~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~sw~dL~~~~~kg 158 (346)
T 2voz_A 80 GDILFTVDAGMLWRAEQAGLFQPVRSGKLNERIPENLRHPDGLWYGFTQRARVLYYSRDRVNP-ADLSTYEALADPQWRG 158 (346)
T ss_dssp CSEEEEESHHHHHHHHHTTCBCCCCCHHHHHHSCGGGBCTTSSCEEEEEEEEEEEEETTTCCG-GGCCCSGGGGSGGGTT
T ss_pred CEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHCHHHHCCCCCCCEEEEEEEEEEEEECCCCCC-CCCCHHHHHCCHHHCC
T ss_conf 639960688999999866874546707788638075438875512333434788873134577-8987067623987589
Q ss_pred EEEECCCCCC-HHHHHHHHHHHHCHHHHHHHHHHHHHCCC
Q ss_conf 5996289830-49999999996086999999999860887
Q gi|254780563|r 151 RLSIAPNNIS-FHRLLNTMEQTPNKTVVQDFIKNITANEI 189 (195)
Q Consensus 151 ~i~~~~~~~s-~~~~~~a~~~~~G~~~~~~~l~~l~~N~~ 189 (195)
++.+++..++ +..++.......+.+...++..+...|..
T Consensus 159 ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (346)
T 2voz_A 159 KILVRPSSNVYNLSLTASRIAIHGEPETRRWLQGLVGNFA 198 (346)
T ss_dssp TEECCCTTSHHHHHHHHHHHHHHCHHHHHHHHHHHHHTBS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 6512688851899999999985076114567889987410
No 8
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=99.82 E-value=7.2e-20 Score=131.81 Aligned_cols=158 Identities=16% Similarity=0.296 Sum_probs=110.4
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH--HHHHH-HHCCCCCEEEECCHHHHH-HHHH-HHCCCCC
Q ss_conf 44588089981899899999999999875986210000135--66765-210666557504223323-4331-0000123
Q gi|254780563|r 23 ENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSI--QRPPI-TQGSPVDVIITKDETSLA-LNED-LLHKLPA 97 (195)
Q Consensus 23 ~~~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~--~~~~~-~~~~~~d~~~~~d~~~l~-~~~~-~l~~~~~ 97 (195)
++.++||||||+++++++++++++|||+|||+|+++.+++. +++.+ ..+.++||+++.+..... ...+ .+.....
T Consensus 2 ~~~a~el~vYs~~~~~~~~~li~~Fek~tGIkV~~~~~~~~~~~kl~ae~~~~~~DV~~~~~~~~~~~~~~~~~~~~~~~ 81 (323)
T 1y9u_A 2 SHMSDEVSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNLIDLVNGGVTQKIQS 81 (323)
T ss_dssp ----CEEEEEESSCGGGTHHHHHHHHHHHCCEEEEEECSSCHHHHHHHHGGGCCCCEEEEESHHHHHHHHHTTCEECCCC
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCC
T ss_conf 65578369997988768999999999866987999979889999999745899987899786789999886045311242
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHH--HHHHHHHHHCH
Q ss_conf 4222-34720001222223443450588873344013445578888408667685996289830499--99999996086
Q gi|254780563|r 98 HLIK-KNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHR--LLNTMEQTPNK 174 (195)
Q Consensus 98 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~--~~~a~~~~~G~ 174 (195)
.... ..+...++...++.++.....++.||++.. ..|++|.||++|+|+|++.+..+..+... ++..+....|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~s~~dl~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 158 (323)
T 1y9u_A 82 QTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLK---LDSFRYGDLADPKWKGKVCIRSGQHPYNTALVAAMIAHDGAE 158 (323)
T ss_dssp HHHHHHSCGGGBCGGGSCEEEEEEEEEEEEETTCC---CCCCBGGGGGCGGGTTCEECCCTTSHHHHHHHHHHHHHHCHH
T ss_pred CCCCCCCCHHHCCCCCCCCCCCEEEEEEEECCCCC---CCCCCHHCCCCHHHCCCEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 34233441221245653333210234564124557---898741011497775865204677734899999999763150
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780563|r 175 TVVQDFIKN 183 (195)
Q Consensus 175 ~~~~~~l~~ 183 (195)
.....+...
T Consensus 159 ~~~~~~~~~ 167 (323)
T 1y9u_A 159 ATEKWLRGV 167 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 056788877
No 9
>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=99.81 E-value=2.6e-19 Score=128.62 Aligned_cols=188 Identities=11% Similarity=0.109 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHHHHHHC--------CCCCCCCEEEECCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHH---HH--
Q ss_conf 02599999999999998612--------444588089981899899999999999875-98621000013566---76--
Q gi|254780563|r 2 FKRTIYTYLLLLCGFTEAFS--------TENTTKYLTLYTDQNQSVMLPIIHSFEERT-GVKISPIYTSSIQR---PP-- 67 (195)
Q Consensus 2 mkk~~~~~l~l~~~~~~~~~--------~~~~~~~lvVYs~~~~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~---~~-- 67 (195)
||+++++.|++.++..++++ +.+..++|+|||+.++...++++++||++| ||+|+++..+..+. +.
T Consensus 1 ~~~~l~l~l~~~~a~~ala~~~~~~~~~~~~~~~~l~v~s~~~~~~~~~li~~Fe~~~PgI~V~~~~~~~~~~~~kl~~~ 80 (355)
T 3c9h_A 1 MRICLFLCLCLCMASPALAQVAVFPALSGKTDAQTLVVYSSLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKE 80 (355)
T ss_dssp ---------------CEEEEEEEECCTTC----CEEEEEECSCHHHHHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 90799999999999999988864234356777997999979887899999999998788938999968858999999987
Q ss_pred -HHHCCCCCEEEECCHHHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHC
Q ss_conf -5210666557504223323--4331000012342223472000122222344345058887334401344557888840
Q gi|254780563|r 68 -ITQGSPVDVIITKDETSLA--LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLT 144 (195)
Q Consensus 68 -~~~~~~~d~~~~~d~~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~ 144 (195)
...+.+.|+++..+...+. ...+++..++. ......+...+...++++....+.++.||++.+.....|++|.++.
T Consensus 81 ~~ag~~~~Dv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~~~~~~~~~~~ 159 (355)
T 3c9h_A 81 TDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDL-AMSARWPAWANWRNTAYALTFEPAVFVYHKPSFTTEKPPATRAEFV 159 (355)
T ss_dssp HHTTCCBCSEEEESCHHHHHHHHHTTCEECCCC-TTTTTSCGGGEETTTEEECBCEEEEEEEEGGGCSSSCCCCSHHHHH
T ss_pred HHCCCCCCCEEEECCHHHHHHHHHCCCCCCCCC-HHHHCCCHHCCCCCCEEECCCEEEEEEEECCCCCCCCCCCCHHHHH
T ss_conf 514898642676165789999996687445771-2220360220566855500120689999433333446888767765
Q ss_pred ------CHHHCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC
Q ss_conf ------8667685996289830499999999960869999999998608870
Q gi|254780563|r 145 ------NAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITANEIL 190 (195)
Q Consensus 145 ------~p~~kG~i~~~~~~~s~~~~~~a~~~~~G~~~~~~~l~~l~~N~~~ 190 (195)
..+.+|...+.+...++...........+.+.++++++++.+|+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 211 (355)
T 3c9h_A 160 DYLERHAKEVHGRIATYDIERSGVGFLFMSRDQEQFGDIWSVIKAMGAAGVK 211 (355)
T ss_dssp HHHHHTHHHHTTCEEEECTTC-CHHHHHHHHHHHHCTTHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6887643332284311464210246666655321258999999998750576
No 10
>2v84_A Spermidine/putrescine ABC transporter, periplasmic binding protein; polyamine binding, syphilis, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=99.72 E-value=1.5e-17 Score=118.65 Aligned_cols=151 Identities=12% Similarity=0.090 Sum_probs=100.8
Q ss_pred HHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHCCCCCEEEECCHH-HHHHHHHHH
Q ss_conf 9861244458808998189989999999999987598621000013566---765210666557504223-323433100
Q gi|254780563|r 17 TEAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQR---PPITQGSPVDVIITKDET-SLALNEDLL 92 (195)
Q Consensus 17 ~~~~~~~~~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~---~~~~~~~~~d~~~~~d~~-~l~~~~~~l 92 (195)
..++.-.+++++|+||++..+ ..+.++++||++|||+|++...++.+. .++.++.+.|+++..+.. ....+.|++
T Consensus 15 ~~~~~~~~~~~~L~v~~W~~y-~~~~~i~~Fe~~~gIkV~~~~~~~~~~~~~kl~ag~~~~Dvv~~~~~~~~~~~~~gll 93 (343)
T 2v84_A 15 EGRGRLQTRQDVLYLYNWTYY-TPTSLIKKFEQQYNVQVVYDDYASNEDMFAKLSIGASGYDLVVPSGDFVSIMKRKHLL 93 (343)
T ss_dssp ----------CEEEEEEETTT-SCHHHHHHHHHHHTCEEEEEEESCHHHHHHHHSSSCCSCSEECCBHHHHHHHHHTTCE
T ss_pred CCCCCCCCCCCEEEEEECCCC-CCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCC
T ss_conf 787653355898999947774-7989999999997988999958998999999982899999899798999999977996
Q ss_pred CCCCCCC---CCCCCCCCCCC------CCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHH
Q ss_conf 0012342---22347200012------22223443450588873344013445578888408667685996289830499
Q gi|254780563|r 93 HKLPAHL---IKKNSFVLKNE------NKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHR 163 (195)
Q Consensus 93 ~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~ 163 (195)
++++... ..++.+.++.. ..+.+|+.....+++||++.++ .+|+||.||++|+|+|++++.++....
T Consensus 94 ~~ld~~~~~~~~~i~~~~~~~~~~~~g~~y~vP~~~~~~~l~YNkd~~~--~~p~tw~~l~~~~~~g~~~~~~~~~~~-- 169 (343)
T 2v84_A 94 EKIDLSKIPNVQFIKESVRARIAYDPKMEYSVPYYLGAAGIAVNKKAVP--SYARTWSIFSRKDLAYRMSMMDDMREV-- 169 (343)
T ss_dssp ECCCGGGCGGGGGBCHHHHHHCTTSTTCSSCEEEEEECCEEEEETTTCC--SCCSSGGGGGCGGGTTSEEECSCHHHH--
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEEHHHCC--CCCCCHHHHHHHHHCCCCCCCCCHHHH--
T ss_conf 5478455410544036653133107998478788853258998631158--875508887678752676667862679--
Q ss_pred HHHHHHHHH
Q ss_conf 999999960
Q gi|254780563|r 164 LLNTMEQTP 172 (195)
Q Consensus 164 ~~~a~~~~~ 172 (195)
+..++....
T Consensus 170 ~~~~l~~~G 178 (343)
T 2v84_A 170 MGAALASLG 178 (343)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHC
T ss_conf 999999838
No 11
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=99.69 E-value=3.6e-17 Score=116.43 Aligned_cols=162 Identities=12% Similarity=0.152 Sum_probs=107.1
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH----HHHHHCCCCCEEEECCH-HHHHHHHHHHCCCCCCC
Q ss_conf 58808998189989999999999987598621000013566----76521066655750422-33234331000012342
Q gi|254780563|r 25 TTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQR----PPITQGSPVDVIITKDE-TSLALNEDLLHKLPAHL 99 (195)
Q Consensus 25 ~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~----~~~~~~~~~d~~~~~d~-~~l~~~~~~l~~~~~~~ 99 (195)
.+++|+|||+.++ ..++++++|||+|||+|+++..++.+. +..+.+.+.|+++..+. .......|++++++...
T Consensus 2 ~~~~L~v~~w~~~-~~~~ii~~Fek~~gi~V~~~~~~~~~~~~~~~~a~~~~~~Dvv~~~~~~~~~~~~~g~~~~ld~~~ 80 (325)
T 1pot_A 2 DNNTLYFYNWTEY-VPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSK 80 (325)
T ss_dssp -CEEEEEEEESSS-SCTTHHHHHHHHHCEEEEEEEESCHHHHHHHHTTCSSSCSSBBCCBGGGHHHHHHHTCBCCCCTTS
T ss_pred CCCEEEEEECCCC-CCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHC
T ss_conf 9998999947774-798999999999699899996899999999998069999849994868999999769521355000
Q ss_pred ---CCCCCCCCCC-----CCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHHHH-HHHHH
Q ss_conf ---2234720001-----22222344345058887334401344557888840866768599628983049999-99999
Q gi|254780563|r 100 ---IKKNSFVLKN-----ENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLL-NTMEQ 170 (195)
Q Consensus 100 ---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~~~-~a~~~ 170 (195)
...+.+.+.+ ...+.+|+.....+++||+++++.. .|++|.||++|+|+|++++.++..+..... ..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~g~~~~vP~~~~~~~l~Yn~d~~~~~-~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 159 (325)
T 1pot_A 81 LTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPK-SVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGY 159 (325)
T ss_dssp CTTGGGBCGGGSCCTTSTTCSSCEEEEEEEEEEEEETTTSCTT-TCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHCCCCCCCCCEEEEEEEEECCEEECHHHCCCC-CCCCHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 4450002877750445899836999975412123216442887-657688845877569750147620178999998623
Q ss_pred H---HCH---HHHHHHHHHHHHCC
Q ss_conf 6---086---99999999986088
Q gi|254780563|r 171 T---PNK---TVVQDFIKNITANE 188 (195)
Q Consensus 171 ~---~G~---~~~~~~l~~l~~N~ 188 (195)
. .++ ...+++++.+..|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~ 183 (325)
T 1pot_A 160 SGNTTDPKEIEAAYNELKKLMPNV 183 (325)
T ss_dssp CTTCCCHHHHHHHHHHHHHTGGGE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 534577577778999998862202
No 12
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=99.51 E-value=1.1e-14 Score=102.17 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=105.2
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHCCCCCEEEECCH-HHHHHHHHHHCCCCCCC
Q ss_conf 458808998189989999999999987598621000013566---76521066655750422-33234331000012342
Q gi|254780563|r 24 NTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQR---PPITQGSPVDVIITKDE-TSLALNEDLLHKLPAHL 99 (195)
Q Consensus 24 ~~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~---~~~~~~~~~d~~~~~d~-~~l~~~~~~l~~~~~~~ 99 (195)
+++++|+||++.++ ..+.++++|||+|||+|++...++.+. ++...+.+.|++..... .......+++++++...
T Consensus 1 A~~~~L~v~~W~~~-~~~~li~~Fek~tGi~V~~~~~~~~~~~~~~l~ag~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~ 79 (344)
T 1a99_A 1 AEQKTLHIYNWSDY-IAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSK 79 (344)
T ss_dssp --CCEEEEEEETTC-SCTTHHHHHHHHHCCEEEEEEESCHHHHHHHHHHCCCCCSEECCBHHHHHHHHHTTCBCCCCGGG
T ss_pred CCCCEEEEEECCCC-CCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCCHHH
T ss_conf 99988999968774-79889999999979989999589999999999828999978998889999999749845132433
Q ss_pred CCC---CCCCCC-------CCCCCCCCCCCCEEEEEEEHHHHCCC----CCCCCHHHHCCHHHCCEEEECCC--CCCHHH
Q ss_conf 223---472000-------12222234434505888733440134----45578888408667685996289--830499
Q gi|254780563|r 100 IKK---NSFVLK-------NENKKLMRISFDTQVLAYSTKRIKIA----DLPKSVFDLTNAQWKKRLSIAPN--NISFHR 163 (195)
Q Consensus 100 ~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~----~~P~sw~DL~~p~~kG~i~~~~~--~~s~~~ 163 (195)
..+ +.+.+. +...+..|+.....+++||++.++.. .+|++|+||++|+++++...+.. ......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~g~~y~~P~~~~~~~l~Ynk~~~~~~~~~~~p~~tw~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (344)
T 1a99_A 80 LPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEE 159 (344)
T ss_dssp CGGGGGBCHHHHHHHHTTSGGGCSEEEEEEEEEEEEEEHHHHHHHHCTTCCTTSTHHHHSHHHHHHHGGGCEEECSCHHH
T ss_pred HCCCHHCCHHHHHHCCCCCCCCEEEEEEEECCEEEEEEHHHHHHCCCCCCCHHHHHHHHCHHHHCCCCCCCCCCCCCHHH
T ss_conf 20200069888740033348977999999454116777887643028876215778751956530134688666787899
Q ss_pred HHHHHHHHHCH-----------HHHHHHHHHHHHCC
Q ss_conf 99999996086-----------99999999986088
Q gi|254780563|r 164 LLNTMEQTPNK-----------TVVQDFIKNITANE 188 (195)
Q Consensus 164 ~~~a~~~~~G~-----------~~~~~~l~~l~~N~ 188 (195)
++.......|. ....++++.++.+.
T Consensus 160 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (344)
T 1a99_A 160 VFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNI 195 (344)
T ss_dssp HHHHHHHHTTSCTTCCCHHHHHTHHHHHHHHHGGGC
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999999965988777676788899999975440341
No 13
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=99.41 E-value=1.4e-12 Score=90.27 Aligned_cols=140 Identities=13% Similarity=0.100 Sum_probs=83.4
Q ss_pred HHHHHHCCCCCCCCEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-CCCCCEEEECCHHHHH--HHHH
Q ss_conf 9998612444588089981899-8999999999998759862100001356676521-0666557504223323--4331
Q gi|254780563|r 15 GFTEAFSTENTTKYLTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQ-GSPVDVIITKDETSLA--LNED 90 (195)
Q Consensus 15 ~~~~~~~~~~~~~~lvVYs~~~-~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~-~~~~d~~~~~d~~~l~--~~~~ 90 (195)
..++...+..++++|+||++.+ .+.+++++++||++|||+|+++.+++.+...+.+ +.++|+++..+..... ...+
T Consensus 11 ~~g~~~~~~~~~~~ltVy~a~s~~~~~~~i~~~Fe~~tgi~V~~~~~gs~~l~~~i~~g~~~d~~~~~~~~~~~~~~~~~ 90 (253)
T 3gzg_A 11 SSGLVPRGSHMTAPVTVFAAASLKESMDEAATAYEKATGTPVRVSYAASSALARQIEQGAPADVFLSADLEWMDYLQQHG 90 (253)
T ss_dssp -----------CCCEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEEEECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCC
T ss_conf 65677666567877899981570999999999998842977999978759999999739996599967576788875157
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCC--CCHHHHCCHHHCCEEEECCCCCCHHHHHHHH
Q ss_conf 00001234222347200012222234434505888733440134455--7888840866768599628983049999999
Q gi|254780563|r 91 LLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLP--KSVFDLTNAQWKKRLSIAPNNISFHRLLNTM 168 (195)
Q Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P--~sw~DL~~p~~kG~i~~~~~~~s~~~~~~a~ 168 (195)
++.+... ........++.++.......++| .+|.||.+|.++..+..|.+++++......+
T Consensus 91 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~g~~~~~~l 153 (253)
T 3gzg_A 91 LVLPAQR-----------------HNLLGNTLVLVAPASSKLRVDPRAPGAIAKALGENGRLAVGQTASVPAGSYAAAAL 153 (253)
T ss_dssp SSCGGGE-----------------EEEEEECEEEEEETTCCCCCCTTSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHH
T ss_pred CCCCCCC-----------------CCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 5222430-----------------00014630024421332345865403288615888759996898883599999999
Q ss_pred HHH
Q ss_conf 996
Q gi|254780563|r 169 EQT 171 (195)
Q Consensus 169 ~~~ 171 (195)
...
T Consensus 154 ~~~ 156 (253)
T 3gzg_A 154 RKL 156 (253)
T ss_dssp HHT
T ss_pred HHH
T ss_conf 995
No 14
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=99.35 E-value=1.5e-11 Score=84.38 Aligned_cols=144 Identities=12% Similarity=0.018 Sum_probs=90.7
Q ss_pred ECCCCHHHHHHHHHHHHH----HCCCCCCCCC--HHHHHHH-HHHHCCCCCEEEECCHHHHH--HHHHHHCCCCCCCCCC
Q ss_conf 818998999999999998----7598621000--0135667-65210666557504223323--4331000012342223
Q gi|254780563|r 32 YTDQNQSVMLPIIHSFEE----RTGVKISPIY--TSSIQRP-PITQGSPVDVIITKDETSLA--LNEDLLHKLPAHLIKK 102 (195)
Q Consensus 32 Ys~~~~~~~~~~~~~Fek----~tgIkV~~~~--~~~~~~~-~~~~~~~~d~~~~~d~~~l~--~~~~~l~~~~~~~~~~ 102 (195)
|.. ..++-+++.++|++ +||++|++.. +++..+. ...++.++|++++.+...+. .++|++.+....
T Consensus 10 y~~-~~e~~~~i~~aF~k~y~~~TG~~V~v~~~~ggSg~~~~~i~~g~~aDV~~~a~~~~~~~l~~~gl~~~~~~~---- 84 (310)
T 1sbp_A 10 YDP-TRELYEQYNKAFSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDVNAIAERGRIDKNWIK---- 84 (310)
T ss_dssp CST-THHHHHHHHHHHHHHHHHHHSCEEEEEEEESCHHHHHHHHHTTCCCSEEEESSHHHHHHHHHTTSSCTTGGG----
T ss_pred ECC-HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCHHHH----
T ss_conf 104-399999999999999876149977999647861999999974999898985777889999977998720334----
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHHHH----HHHHHHHC--HHH
Q ss_conf 472000122222344345058887334401344557888840866768599628983049999----99999608--699
Q gi|254780563|r 103 NSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLL----NTMEQTPN--KTV 176 (195)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~~~----~a~~~~~G--~~~ 176 (195)
....+..+.....+++++.+.. ..|++|.||++|.+|..+..+.+++++.... .......| +++
T Consensus 85 -------~~~~~~~~~~~~~~~~v~~~~~---~~~~~w~DL~~~~~k~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~ 154 (310)
T 1sbp_A 85 -------RLPDDSAPYTSTIVFLVRKGNP---KQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAK 154 (310)
T ss_dssp -------GSHHHHCSEEBCEEEEEETTCT---TCCCSGGGGGSTTCCEECCCTTTCHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred -------HCCCCCEEEEEEEEEEEECCCC---CCCCCHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf -------3035740366125899707985---566657876122324254167766411699999999886403775899
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999998608870
Q gi|254780563|r 177 VQDFIKNITANEIL 190 (195)
Q Consensus 177 ~~~~l~~l~~N~~~ 190 (195)
+++|+++|..|...
T Consensus 155 ~~~~~~~l~~n~~~ 168 (310)
T 1sbp_A 155 AEDFVKALFKNVEV 168 (310)
T ss_dssp HHHHHHHHHHTEEE
T ss_pred HHHHHHHHHCCCCE
T ss_conf 99999986315733
No 15
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=99.32 E-value=2e-12 Score=89.40 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=92.1
Q ss_pred CEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHH-HHHHHCCCCCCCCCCCCC
Q ss_conf 089981899-899999999999875986210000135667652106665575042233234-331000012342223472
Q gi|254780563|r 28 YLTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSLAL-NEDLLHKLPAHLIKKNSF 105 (195)
Q Consensus 28 ~lvVYs~~~-~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~d~~~l~~-~~~~l~~~~~~~~~~~~~ 105 (195)
||+||++.+ ...++++.++||++|||+|+++.+++.+.....++ .+|+++..+...... .++....
T Consensus 2 ei~v~~~~~~~~~~~~l~~~Fek~tGi~V~~~~~~s~~l~~~i~~-~aDv~~~~~~~~~~~~~~~~~~~----------- 69 (237)
T 2hxw_A 2 DVNLYGPGGPHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAKK-DADILFGASDQSALAIASDFGKD----------- 69 (237)
T ss_dssp CEEEEECSSTHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHH-HCSEEEESSHHHHHHHHTTSGGG-----------
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHC-CCCEEEECCCHHHHHHHHHHCCC-----------
T ss_conf 799994789789999999999880197599997782999999765-99999984604789998861046-----------
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCH--HHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 00012222234434505888733440134455788884086676859962898304--9999999996086999999999
Q gi|254780563|r 106 VLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISF--HRLLNTMEQTPNKTVVQDFIKN 183 (195)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~--~~~~~a~~~~~G~~~~~~~l~~ 183 (195)
.....+.++.....++++|.+. ...|++|+||++|.+|+.+..+.+..+. ..+.. ...+.....++++.
T Consensus 70 ---~~~~~~~~~~~~~~vl~~~~~~---~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 140 (237)
T 2hxw_A 70 ---FNVSKIKPLYFREAIILTQKGN---PLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWE---DMIGRTQDIKTIQN 140 (237)
T ss_dssp ---CCGGGCEEEEEEEEEEEESTTC---TTCCCSHHHHHHSCCCEEECCCTTSSCCTTTTHHH---HHHHTTCCHHHHHH
T ss_pred ---CCCCCEEEEEEEEEEEEEECCC---CCCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCHHHHHH
T ss_conf ---7777279999432999997999---76765235664203106651368873222799999---98622220889997
Q ss_pred HHHCCC
Q ss_conf 860887
Q gi|254780563|r 184 ITANEI 189 (195)
Q Consensus 184 l~~N~~ 189 (195)
+++|.+
T Consensus 141 ~~~~~~ 146 (237)
T 2hxw_A 141 FRNNIV 146 (237)
T ss_dssp HHHTEE
T ss_pred HHCCCE
T ss_conf 435705
No 16
>1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} SCOP: c.94.1.1 PDB: 1wod_A
Probab=99.20 E-value=4.6e-11 Score=81.57 Aligned_cols=134 Identities=14% Similarity=0.175 Sum_probs=79.3
Q ss_pred CCCEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-CCCCCEEEECCHHHHHHH--HHHHCCCCCCCCC
Q ss_conf 88089981899-8999999999998759862100001356676521-066655750422332343--3100001234222
Q gi|254780563|r 26 TKYLTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQ-GSPVDVIITKDETSLALN--EDLLHKLPAHLIK 101 (195)
Q Consensus 26 ~~~lvVYs~~~-~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~-~~~~d~~~~~d~~~l~~~--~~~l~~~~~~~~~ 101 (195)
+++|+||++.+ .+.+++++++|||+|||+|+++.+++.+.+.+.+ +..+|+++..+....... ...+.+
T Consensus 2 ~g~l~v~~a~s~~~~~~~l~~~Fek~~gi~V~~~~g~s~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~------- 74 (233)
T 1amf_A 2 EGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDT------- 74 (233)
T ss_dssp -CEEEEEEEGGGHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCG-------
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCC-------
T ss_conf 9779999962639999999999988119779999777599999997399986899664555677775256566-------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCC--HHHHHHHHHHHHCHHHH
Q ss_conf 34720001222223443450588873344013445578888408667685996289830--49999999996086999
Q gi|254780563|r 102 KNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNIS--FHRLLNTMEQTPNKTVV 177 (195)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s--~~~~~~a~~~~~G~~~~ 177 (195)
+....... ....+.++.........|++|.++.++.+++++++.++.++ +......+ ...|.+..
T Consensus 75 ---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~-~~~~~~~~ 141 (233)
T 1amf_A 75 ---------ATRQTLLG-NSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEAL-QKLGAWDT 141 (233)
T ss_dssp ---------GGCEEEEE-ECEEEEEETTCCCCCCCCSTTCCHHHHHTTCCEEEECTTTCHHHHHHHHHH-HHTTCHHH
T ss_pred ---------CCEEEECC-CCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH-HHCCCHHH
T ss_conf ---------64245204-412553034211454455425569862469938998998751899999999-97275123
No 17
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=99.13 E-value=5.5e-10 Score=75.42 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=103.6
Q ss_pred HCCCCCCCCEEEECC--CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEEC-CHHHHHHHHHHHC
Q ss_conf 124445880899818--998999999999998759862100001356676---5210666557504-2233234331000
Q gi|254780563|r 20 FSTENTTKYLTLYTD--QNQSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITK-DETSLALNEDLLH 93 (195)
Q Consensus 20 ~~~~~~~~~lvVYs~--~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~-d~~~l~~~~~~l~ 93 (195)
.+.+.++++|+|+.. ...+.+++++++||+++||+|++...+.....+ ...+...|+++.. +........|++.
T Consensus 12 ~~~~~~~g~ltiW~~~~~~~~~~~e~~~~Fe~~~gIkV~i~~~~~~~~kl~t~~~sG~~PDV~~~~~~~~~~~~~~G~l~ 91 (471)
T 3mq9_A 12 TSMKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLA 91 (471)
T ss_dssp ------CCSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEETTHHHHHHHTTCBC
T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCC
T ss_conf 76777685799996798337999999999601639579998588899999999866999869998917899999879923
Q ss_pred CCCCCCC--CCCCCCCCC---CCC--CCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC----HHHCCEEEECCCCCCHH
Q ss_conf 0123422--234720001---222--223443450588873344013445578888408----66768599628983049
Q gi|254780563|r 94 KLPAHLI--KKNSFVLKN---ENK--KLMRISFDTQVLAYSTKRIKIADLPKSVFDLTN----AQWKKRLSIAPNNISFH 162 (195)
Q Consensus 94 ~~~~~~~--~~~~~~~~~---~~~--~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~----p~~kG~i~~~~~~~s~~ 162 (195)
++..... +...+...+ .+| +.+|......++.||++.++ ++|++|+||.+ ...+|...+.-......
T Consensus 92 ~L~~~~~~~d~~~~~~~~~~~~dGk~Y~iP~~~~~~~l~YNkd~~~--e~P~Twddl~~~a~~~~~~~~~~~~~~~~~~~ 169 (471)
T 3mq9_A 92 EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPY 169 (471)
T ss_dssp CCCCCHHHHTTBCHHHHGGGEETTEECEEEEEEEECEEEEETTTCS--SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHH
T ss_pred CCCCCHHHHHHCCHHHHHHCEECCEEEECCEEECCEEEEEECCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 1893654475458888974469999971673513336898254444--79702578999998767407886435777631
Q ss_pred HHHHHHHHHH-C---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999960-8---------------------6999999999860887056
Q gi|254780563|r 163 RLLNTMEQTP-N---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 163 ~~~~a~~~~~-G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
.+ ..++... | ...+.+|++.|..++...+
T Consensus 170 ~~-~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~eal~~l~~l~~~g~~~~ 220 (471)
T 3mq9_A 170 FT-WPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 220 (471)
T ss_dssp HH-HHHHGGGTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 15-9999972784002345776544345577889999999999997489885
No 18
>3kjt_A Maltose-binding periplasmic protein; alternate conformation, sugar transport, transpor transport protein; 1.50A {Escherichia coli k-12} PDB: 3hpi_A 1anf_A* 1dmb_A* 1ez9_A* 1jw4_A 1jw5_A* 1lls_A 1omp_A 2d21_A 2r6g_E* 3mbp_A* 4mbp_A* 1fqa_A* 1fqb_A* 1fqc_A* 1fqd_A* 1ezo_A 1ezp_A 2h25_A 2klf_A ...
Probab=99.11 E-value=7e-10 Score=74.82 Aligned_cols=170 Identities=14% Similarity=0.125 Sum_probs=102.9
Q ss_pred CCCCCCCCEEEECCC--CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEECCH-HHHHHHHHHHCC
Q ss_conf 244458808998189--98999999999998759862100001356676---521066655750422-332343310000
Q gi|254780563|r 21 STENTTKYLTLYTDQ--NQSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITKDE-TSLALNEDLLHK 94 (195)
Q Consensus 21 ~~~~~~~~lvVYs~~--~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~d~-~~l~~~~~~l~~ 94 (195)
+++..+++|+|+++. ....+++++++||++|||+|++...+.....+ ...++..|++..... .......|++.+
T Consensus 1 ga~~~~~~l~~W~~~~~~~~~~~~~~~~Fe~~~gi~V~~~~~~~~~~~l~~~~~sg~~pDv~~~~~~~~~~~~~~g~l~~ 80 (372)
T 3kjt_A 1 GAKIEEGKLVIWINGLFGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFYAHDRFGGYAQSGLLAE 80 (372)
T ss_dssp --CCCTTSEEEECCTTSCHHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEHHHHHHHHHTTCBCC
T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCC
T ss_conf 99876776999978983159999999998751393899985888999999998679998699999288999998789042
Q ss_pred CCCCCCC--CCCCCCC---CCCCCC--CCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC----HHHCCEEEECCCCCCHHH
Q ss_conf 1234222--3472000---122222--3443450588873344013445578888408----667685996289830499
Q gi|254780563|r 95 LPAHLIK--KNSFVLK---NENKKL--MRISFDTQVLAYSTKRIKIADLPKSVFDLTN----AQWKKRLSIAPNNISFHR 163 (195)
Q Consensus 95 ~~~~~~~--~~~~~~~---~~~~~~--~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~----p~~kG~i~~~~~~~s~~~ 163 (195)
+...... ...+... ..+|.. +|+.....++.||++.+. ++|++|+++.+ .+.+|...+.-+......
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~~~ynkd~~~--e~p~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (372)
T 3kjt_A 81 ITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVYALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYF 158 (372)
T ss_dssp CCCCHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSBSTTHHHHHHHHHTTTCEEECCCCSSHHH
T ss_pred CCCCHHHHHHCCHHHHHHCEECCEEEEEECCCCCEEEEEECCCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 891333465538988973559998999851466069999752333--588304789999986452177663357775244
Q ss_pred HHHHHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999608---------------------6999999999860887056
Q gi|254780563|r 164 LLNTMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 164 ~~~a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
+...+....| ...+.+|+++|..++...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 208 (372)
T 3kjt_A 159 TWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 208 (372)
T ss_dssp HHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 69999972772012345665455556566889999999999986388775
No 19
>3h3g_A Fusion protein of maltose-binding periplasmic domain and human parathyroid hormone...; GPCR, extracellular domain, PTHRP, PTH, PThr1, periplasm, sugar transport, transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A* 3ehs_A* 3ehu_A* 3eht_A*
Probab=99.07 E-value=2e-09 Score=72.22 Aligned_cols=169 Identities=14% Similarity=0.150 Sum_probs=100.8
Q ss_pred CCCCCCCEEEECCC--CHHHHHHHHHHHHHHCCCCCCCCCHHHHHH-HH--HHHCCCCCEEEEC-CHHHHHHHHHHHCCC
Q ss_conf 44458808998189--989999999999987598621000013566-76--5210666557504-223323433100001
Q gi|254780563|r 22 TENTTKYLTLYTDQ--NQSVMLPIIHSFEERTGVKISPIYTSSIQR-PP--ITQGSPVDVIITK-DETSLALNEDLLHKL 95 (195)
Q Consensus 22 ~~~~~~~lvVYs~~--~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~-~~--~~~~~~~d~~~~~-d~~~l~~~~~~l~~~ 95 (195)
+++++++|+|+.+. ..+.+++++++||+++||+|+++..+.... +. ...++..|+++.. +......+.|++.++
T Consensus 2 ak~eeg~ltvW~~~~~~~~~l~e~i~~Fek~tgIkV~v~~~~d~~~kl~taiasG~~PDV~~~~~~~~~~~a~~G~l~dL 81 (539)
T 3h3g_A 2 AKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEI 81 (539)
T ss_dssp CCCCTTCEEEECCTTSCHHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCBCCC
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCEEEC
T ss_conf 88667679999679804899999999974252947999828879999999986799985999890889999988895148
Q ss_pred CCCCC--CCCCCCCCC---CCC--CCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCH--HH--CCEEEECCCCCCHHHH
Q ss_conf 23422--234720001---222--2234434505888733440134455788884086--67--6859962898304999
Q gi|254780563|r 96 PAHLI--KKNSFVLKN---ENK--KLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA--QW--KKRLSIAPNNISFHRL 164 (195)
Q Consensus 96 ~~~~~--~~~~~~~~~---~~~--~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p--~~--kG~i~~~~~~~s~~~~ 164 (195)
..... +...+...+ .+| +.+++.....++.||++.++ ++|++|+||.+- +. +|...+.........+
T Consensus 82 ~d~~~~~d~~~~~~~~a~~~dGk~YgvP~~~~~~~l~YNkdl~~--e~P~Twdel~~~ak~~~~~g~~~~~~~~~~~~~~ 159 (539)
T 3h3g_A 82 TPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFT 159 (539)
T ss_dssp CCCHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHH
T ss_pred CCCHHHHHHCCHHHHHHCEECCEEEEEEEECCCEEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 95644465458887864279999999998633128999533345--7970366789888765403777632577522577
Q ss_pred HHHHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 999999608---------------------6999999999860887056
Q gi|254780563|r 165 LNTMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 165 ~~a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
...+.+..| ..++.+|++.|..++...+
T Consensus 160 ~~~~~~~gg~~~~~d~~~~~~~~~~~~s~~~~eale~l~~l~~~g~~~~ 208 (539)
T 3h3g_A 160 WPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 208 (539)
T ss_dssp HHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8777751783211345665444445477889999999999997489884
No 20
>1r6z_P Chimera of maltose-binding periplasmic protein and argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 PDB: 1t2r_A 1t2s_A
Probab=99.05 E-value=4.1e-09 Score=70.46 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=100.9
Q ss_pred CCCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEECC-HHHHHHHHHHHCCCC
Q ss_conf 44588089981899--8999999999998759862100001356676---52106665575042-233234331000012
Q gi|254780563|r 23 ENTTKYLTLYTDQN--QSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITKD-ETSLALNEDLLHKLP 96 (195)
Q Consensus 23 ~~~~~~lvVYs~~~--~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~d-~~~l~~~~~~l~~~~ 96 (195)
+.+.++|+||+..+ .+.+++++++|++++||+|++...+.....+ ...++..|+++... ........|++.++.
T Consensus 2 ~~eeGtltvW~~~~~~~~~l~~~~~~Fe~~~gIkV~i~~~~d~~~kl~t~iasG~~PDVi~~~~~~~~~~~~~G~l~dL~ 81 (509)
T 1r6z_P 2 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT 81 (509)
T ss_dssp -CCCSSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHHTCSCSEEEEEGGGHHHHHHTTCBCCCC
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCEEECC
T ss_conf 87773799996798238999999999732519689998488799999999866999869999908999999888951489
Q ss_pred CCCC--CCCCCCC---CCCCCCC--CCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC----HHHCCEEEECCCCCCHHHHH
Q ss_conf 3422--2347200---0122222--3443450588873344013445578888408----66768599628983049999
Q gi|254780563|r 97 AHLI--KKNSFVL---KNENKKL--MRISFDTQVLAYSTKRIKIADLPKSVFDLTN----AQWKKRLSIAPNNISFHRLL 165 (195)
Q Consensus 97 ~~~~--~~~~~~~---~~~~~~~--~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~----p~~kG~i~~~~~~~s~~~~~ 165 (195)
.... +...+.. ...+|.. +|......+++||++.+. ++|++|+||.+ .+.+|...+..+......+.
T Consensus 82 ~~~~~~d~~~~~~~~~~~~dGk~YgiP~~~~~~~l~YNkdl~e--e~P~TwdEl~~~ak~~~~~g~~~~~~~~~~~~~~~ 159 (509)
T 1r6z_P 82 PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW 159 (509)
T ss_dssp CCHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHH
T ss_pred CCHHHHHHCCHHHHHHCEECCEEEEEEEEECCEEEEEECCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 3644465558887864289999999998702208999433455--78335778999987644114666445776406778
Q ss_pred HHHHHHHC---------------------HHHHHHHHHHHHHCCCCC
Q ss_conf 99999608---------------------699999999986088705
Q gi|254780563|r 166 NTMEQTPN---------------------KTVVQDFIKNITANEILT 191 (195)
Q Consensus 166 ~a~~~~~G---------------------~~~~~~~l~~l~~N~~~~ 191 (195)
..+.+..| ...+.+|++.|..++...
T Consensus 160 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~eal~~l~~l~~~~~~~ 206 (509)
T 1r6z_P 160 PLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMN 206 (509)
T ss_dssp HHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99986077201134566554545557688899999999998727888
No 21
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.05 E-value=3.3e-09 Score=70.96 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=100.0
Q ss_pred CCCCCEEEECCC--CHHHHHHHHHHHHHHCCCCCCCCCHHHHHH----HHHHHCCCCCEEEEC-CHHHHHHHHHHHCCCC
Q ss_conf 458808998189--989999999999987598621000013566----765210666557504-2233234331000012
Q gi|254780563|r 24 NTTKYLTLYTDQ--NQSVMLPIIHSFEERTGVKISPIYTSSIQR----PPITQGSPVDVIITK-DETSLALNEDLLHKLP 96 (195)
Q Consensus 24 ~~~~~lvVYs~~--~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~----~~~~~~~~~d~~~~~-d~~~l~~~~~~l~~~~ 96 (195)
.++++|+|+... ..+.+++++++||+++||+|+++..+.... .++. +++.|++... +......+.|++.++.
T Consensus 2 ~~~g~l~vW~~~~~~~~~~~~~~~~fe~~~~i~v~~~~~~~~~~~l~~~~~~-g~~PDv~~~~~~~~~~~~~~g~l~~L~ 80 (694)
T 3dm0_A 2 IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-GDGPDIIFWAHDRFGGYAQSGLLAEIT 80 (694)
T ss_dssp CCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHT-TCSCSEEEEEGGGHHHHHHTTCBCCCC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHC-CCCCEEEEECCHHHHHHHHCCCEEECC
T ss_conf 8652999997798237999999998543639689999688799999999867-998879999918899999888987888
Q ss_pred CCCC--CCCCCCCC---CCCC--CCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC--HH--HCCEEEECCCCCCHHHHH
Q ss_conf 3422--23472000---1222--223443450588873344013445578888408--66--768599628983049999
Q gi|254780563|r 97 AHLI--KKNSFVLK---NENK--KLMRISFDTQVLAYSTKRIKIADLPKSVFDLTN--AQ--WKKRLSIAPNNISFHRLL 165 (195)
Q Consensus 97 ~~~~--~~~~~~~~---~~~~--~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~--p~--~kG~i~~~~~~~s~~~~~ 165 (195)
.... +...+... ..+| +.+|+...+.++.||++.++ ++|++|+||.+ .+ =+|.....-.......+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~dG~~y~vP~~~~~~~~~ynkdl~~--~~P~T~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~ 158 (694)
T 3dm0_A 81 PAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW 158 (694)
T ss_dssp CCHHHHHHBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHH
T ss_pred CCHHHHHHCCHHHHHHEEECCEEEEEEEECCEEEEEEECHHCC--CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf 1301133468886874099999999998874689999917605--89999999999999987458752784477605567
Q ss_pred HHHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 99999608---------------------6999999999860887056
Q gi|254780563|r 166 NTMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 166 ~a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
..+.+..| ..++.+|++.|..++...+
T Consensus 159 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~ 206 (694)
T 3dm0_A 159 PLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 206 (694)
T ss_dssp HHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 777751785402346665544345589999999999999997289898
No 22
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=99.04 E-value=7.4e-10 Score=74.68 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=81.6
Q ss_pred CCCCCEEEECCCCHH---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHH--HHHHHCCCCCC
Q ss_conf 458808998189989---9999999999875986210000135667652106665575042233234--33100001234
Q gi|254780563|r 24 NTTKYLTLYTDQNQS---VMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSLAL--NEDLLHKLPAH 98 (195)
Q Consensus 24 ~~~~~lvVYs~~~~~---~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~d~~~l~~--~~~~l~~~~~~ 98 (195)
.++++|+||++.+-. +.++++++|||+|||+|+++.+++.+.+.+.++...|+++......... ..+....
T Consensus 2 ~a~~~l~i~~~~S~~~~gl~~~l~~~Fek~tgi~V~~~~g~sg~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (236)
T 3lr1_A 2 NAEERLKMSTTTSTQDSGLLKVLLPPFEKKNNVKVDVIAVGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVN---- 77 (236)
T ss_dssp CCSCEEEEEEEHHHHHHCHHHHHHHHHHHHHTCEEEEEEECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEE----
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCC----
T ss_conf 9787699999768630113999999999984987999988879999999769987066023035666653025545----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHC-CCCCCCCHHHHCCHHHCCEEEECCCCCCHHHH
Q ss_conf 2223472000122222344345058887334401-34455788884086676859962898304999
Q gi|254780563|r 99 LIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIK-IADLPKSVFDLTNAQWKKRLSIAPNNISFHRL 164 (195)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~~ 164 (195)
..+.......+..+.+... ....+..+.++.++.+++...++.++.+...+
T Consensus 78 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 129 (236)
T 3lr1_A 78 ---------------RKDVMYNDFVIVGPKNDPAGIAKAKTAAEALKLLATKGATFISRGDKSGTHT 129 (236)
T ss_dssp ---------------EEEEEECCEEEEECTTCTTCGGGCSSHHHHHHHHHHHTCCEEECCSSSHHHH
T ss_pred ---------------CCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHH
T ss_conf ---------------6301100024641133223334431013543112205972550788079999
No 23
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=99.03 E-value=5.2e-09 Score=69.88 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=102.4
Q ss_pred CCCCCCCEEEECCC--CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEEC-CHHHHHHHHHHHCCC
Q ss_conf 44458808998189--98999999999998759862100001356676---5210666557504-223323433100001
Q gi|254780563|r 22 TENTTKYLTLYTDQ--NQSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITK-DETSLALNEDLLHKL 95 (195)
Q Consensus 22 ~~~~~~~lvVYs~~--~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~-d~~~l~~~~~~l~~~ 95 (195)
.+.++++|+|+... ....+.+++++||+++||+|+++..+.....+ ...+...|+++.. +........|++.++
T Consensus 15 ~~~eeG~ltvW~~~~~~~~~l~~~~~~Fe~~~gIkV~~~~~~d~~~kl~t~~asG~~PDV~~~~~~~~~~~~~~G~L~dL 94 (477)
T 2vgq_A 15 MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEI 94 (477)
T ss_dssp --CCTTSEEEECCTTSCHHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCC
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCC
T ss_conf 02578289999779832699999999861052947999838889999999986799987999992899999987893318
Q ss_pred CCCCC--CCCCCCCCC---CCCC--CCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC----HHHCCEEEECCCCCCHHHH
Q ss_conf 23422--234720001---2222--23443450588873344013445578888408----6676859962898304999
Q gi|254780563|r 96 PAHLI--KKNSFVLKN---ENKK--LMRISFDTQVLAYSTKRIKIADLPKSVFDLTN----AQWKKRLSIAPNNISFHRL 164 (195)
Q Consensus 96 ~~~~~--~~~~~~~~~---~~~~--~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~----p~~kG~i~~~~~~~s~~~~ 164 (195)
..... +...+...+ .+|. .+|......++.||++.+. ++|++|+||.+ ..-+|...+.........+
T Consensus 95 ~~~~~~~d~~~~~~~~~~~~dGk~YgvP~~~~~~~~~YNkdl~e--e~P~Twdel~~~ak~~~~~~~~~~~~~~~~~~~~ 172 (477)
T 2vgq_A 95 TPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFT 172 (477)
T ss_dssp CCCHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHH
T ss_pred CCCHHHHHHCCHHHHHHCEECCEEEECCEECCEEEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 93644365558888965479999973655701169999532334--6871367899999742202466643577752435
Q ss_pred HHHHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 999999608---------------------6999999999860887056
Q gi|254780563|r 165 LNTMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 165 ~~a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
...+.+..| ..++.+|++.|..++...+
T Consensus 173 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~ 221 (477)
T 2vgq_A 173 WPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 221 (477)
T ss_dssp HHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999961883012356665543254477899999999999987388785
No 24
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=99.03 E-value=4.1e-10 Score=76.13 Aligned_cols=133 Identities=16% Similarity=0.100 Sum_probs=83.3
Q ss_pred CCCCCEEEECC--CCH-HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHH--HHHHHCCCCCC
Q ss_conf 45880899818--998-99999999999875986210000135667652106665575042233234--33100001234
Q gi|254780563|r 24 NTTKYLTLYTD--QNQ-SVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSLAL--NEDLLHKLPAH 98 (195)
Q Consensus 24 ~~~~~lvVYs~--~~~-~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~d~~~l~~--~~~~l~~~~~~ 98 (195)
+.++.++|++. ..+ .+++++.++|||+|||+|+++.+++.+.+.+.++.++|++++.+...... +.+.+.+..
T Consensus 2 ~~a~~~~~~~~~S~~~sgl~~~l~~~Fek~tGi~V~~~~g~sg~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-- 79 (237)
T 3muq_A 2 NAAEHVRLATTTSTYHSGLLDYLLPQFEKDTGYKVDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPR-- 79 (237)
T ss_dssp ---CEEEEEEEHHHHHHTHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEE--
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCC--
T ss_conf 978727999975874022799999999998598799997784999999866898758851717789887547765552--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHH--HHHHHHHHHCH
Q ss_conf 22234720001222223443450588873344013445578888408667685996289830499--99999996086
Q gi|254780563|r 99 LIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHR--LLNTMEQTPNK 174 (195)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~--~~~a~~~~~G~ 174 (195)
..............+.......+..|.++.++.++++++++++.+++.. ....+....++
T Consensus 80 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 141 (237)
T 3muq_A 80 ----------------KLMYNDFVIVGPKADPAKIKDDESVLDVFKEIANKNATFISRGDDSGTHKKEMGFWAQTKIE 141 (237)
T ss_dssp ----------------EEEEEEEEEEECTTCTTCCTTCSSHHHHHHHHHHTTCCEEECCSCCHHHHHHHHHHHHHTCC
T ss_pred ----------------EEEEEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf ----------------34541002787614631123451256665411245427987776637899999999872565
No 25
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=99.02 E-value=2.6e-09 Score=71.59 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=100.6
Q ss_pred CCCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEECCH-HHHHHHHHHHCCCC
Q ss_conf 44588089981899--8999999999998759862100001356676---521066655750422-33234331000012
Q gi|254780563|r 23 ENTTKYLTLYTDQN--QSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITKDE-TSLALNEDLLHKLP 96 (195)
Q Consensus 23 ~~~~~~lvVYs~~~--~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~d~-~~l~~~~~~l~~~~ 96 (195)
+..+++|+|+.+.+ .+.+++++++||+++||+|+++..+.....+ ...++..|+++.... ...+...|++.+++
T Consensus 5 k~eeg~ltvW~~~~~~~~~~~~~~~~Fe~~tgIkV~~~~~~d~~~kl~~~~asG~~PDvi~~~~~~~~~~~~~G~l~~L~ 84 (805)
T 2nvu_B 5 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT 84 (805)
T ss_dssp CCCTTSEEEECCTTSCSHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHHHSSCSCSEEEEEHHHHHHHHHTTCBCCCC
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCEEECC
T ss_conf 88888799996698338999999999853609589998389899999999866998869999979999999887986799
Q ss_pred CCCC--CCCCCCCC---CCCCCC--CCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCH----HHCCEEEECCCCCCHHHHH
Q ss_conf 3422--23472000---122222--34434505888733440134455788884086----6768599628983049999
Q gi|254780563|r 97 AHLI--KKNSFVLK---NENKKL--MRISFDTQVLAYSTKRIKIADLPKSVFDLTNA----QWKKRLSIAPNNISFHRLL 165 (195)
Q Consensus 97 ~~~~--~~~~~~~~---~~~~~~--~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p----~~kG~i~~~~~~~s~~~~~ 165 (195)
.... +...+... ..+|.. +|+...+.++.||++.+. ++|+||+||.+- +-+|+..+.-+........
T Consensus 85 ~~~~~~~~~~~~~~~~~~~dGk~ygvP~~~~~~~l~Ynkdl~~--eaP~Twdel~~~ak~l~~~g~~~~~~~~~~~~~~~ 162 (805)
T 2nvu_B 85 PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW 162 (805)
T ss_dssp CCHHHHTSBCTTHHHHTEETTEECEEEEEEEECEEEECTTTCS--SCCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHH
T ss_pred CCHHHHHHCCHHHHHHCEECCEEEEEEEECCEEEEEEEHHHHC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
T ss_conf 4754365578988974589998999998753679999908834--89999999999999998669863896168628999
Q ss_pred HHHHHHHC---------------------HHHHHHHHHHHHHCCCCC
Q ss_conf 99999608---------------------699999999986088705
Q gi|254780563|r 166 NTMEQTPN---------------------KTVVQDFIKNITANEILT 191 (195)
Q Consensus 166 ~a~~~~~G---------------------~~~~~~~l~~l~~N~~~~ 191 (195)
..+.+..| ...+.+|++.|..++...
T Consensus 163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 209 (805)
T 2nvu_B 163 PLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMN 209 (805)
T ss_dssp HHHHHTTCEEEEECSSSEEEEEEETSSHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99998477402445443444433458888999999999999759988
No 26
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD, sugar transport, transport, apoptosis, cytoplasm, disease mutation; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=98.99 E-value=3.9e-09 Score=70.55 Aligned_cols=167 Identities=14% Similarity=0.130 Sum_probs=95.7
Q ss_pred CCCCCEEEECC--CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEEC-CHHHHHHHHHHHCCCCC
Q ss_conf 45880899818--998999999999998759862100001356676---5210666557504-22332343310000123
Q gi|254780563|r 24 NTTKYLTLYTD--QNQSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITK-DETSLALNEDLLHKLPA 97 (195)
Q Consensus 24 ~~~~~lvVYs~--~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~-d~~~l~~~~~~l~~~~~ 97 (195)
.++++|+|+.+ ...+.+.+++++||+++||+|++...+.....+ ...+...|+++.. +........|++.++..
T Consensus 2 ~eeG~itiW~~~~~~~~~l~e~~~~Fe~~~gI~V~~~~~~d~~~kl~t~~~aG~~PDVi~~~~~~~~~~~~~G~l~dL~~ 81 (449)
T 3iot_A 2 IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITP 81 (449)
T ss_dssp CCSSSEEEECCTTSCHHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHGGGTCSCSEEEEETTTHHHHHHTTCBCCCCC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCC
T ss_conf 87648999968982389999999997316295799985888999999998679998699999078999998889320891
Q ss_pred CCC--CCCCCCCCC---CCC--CCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC----HHHCCEEEECCCCCCHHHHHH
Q ss_conf 422--234720001---222--223443450588873344013445578888408----667685996289830499999
Q gi|254780563|r 98 HLI--KKNSFVLKN---ENK--KLMRISFDTQVLAYSTKRIKIADLPKSVFDLTN----AQWKKRLSIAPNNISFHRLLN 166 (195)
Q Consensus 98 ~~~--~~~~~~~~~---~~~--~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~----p~~kG~i~~~~~~~s~~~~~~ 166 (195)
... +...+...+ .+| +.+++.....+++||++.++ ++|++|+||.+ ..-+|...+.-+......+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~dGk~YgvP~~~~~~~l~YNkdl~~--e~P~Twdel~~~a~~~~~~~~~~~~~~~~~~~~~~~ 159 (449)
T 3iot_A 82 DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP 159 (449)
T ss_dssp CHHHHTTBCHHHHTTSBSSSCBCCEEEEEEECEEEEETTTCS--SCCSBGGGHHHHHHHHHTTTCBSCCCCCSCHHHHHH
T ss_pred CHHHHHHCCHHHHHHCEECCEEEECCCCCCCEEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 644375458888865479999971344367269999750111--112057899987543211477663147653112466
Q ss_pred HHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999608---------------------6999999999860887056
Q gi|254780563|r 167 TMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 167 a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
.+.+..| ...+.+|++.|..++...+
T Consensus 160 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~ 206 (449)
T 3iot_A 160 LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 206 (449)
T ss_dssp HHTTTTCBSSEECSSCEETTCCBSSSHHHHHHHHHHHHHHHHTSSCT
T ss_pred HHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 78751782211345765433345587899999999999997489885
No 27
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=98.98 E-value=3.2e-09 Score=71.06 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=78.4
Q ss_pred CCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEECCH-HHHHHHHHHHCCCCC
Q ss_conf 4588089981899--8999999999998759862100001356676---521066655750422-332343310000123
Q gi|254780563|r 24 NTTKYLTLYTDQN--QSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITKDE-TSLALNEDLLHKLPA 97 (195)
Q Consensus 24 ~~~~~lvVYs~~~--~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~d~-~~l~~~~~~l~~~~~ 97 (195)
...++|+||++.+ .+..++++++||+++||+|+++..+.....+ ...++..|+++.... .......|++.++..
T Consensus 2 ~eeg~l~vW~~~d~~~~~l~~~~~~Fe~~~gIkV~~~~~~~~~~kl~~~~asG~~PDv~~~~~~~~~~~~~~G~l~~L~~ 81 (658)
T 3f5f_A 2 IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITP 81 (658)
T ss_dssp CCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHTTCSCSEEEEEHHHHHHHHHTTCBCCCCC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCEEECCC
T ss_conf 97768999967983389999999998426194899984888999999998669998699989689999998889756892
Q ss_pred CCC--CCCCCCCCC---CCC--CCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCH
Q ss_conf 422--234720001---222--2234434505888733440134455788884086
Q gi|254780563|r 98 HLI--KKNSFVLKN---ENK--KLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146 (195)
Q Consensus 98 ~~~--~~~~~~~~~---~~~--~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p 146 (195)
... +...+...+ .+| +.+|....+.+++||++.++ ++|+||+||.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~dGk~YgiP~~~~~~~l~YNkdl~~--e~P~Twdel~~~ 135 (658)
T 3f5f_A 82 DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPAL 135 (658)
T ss_dssp CHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSBGGGHHHH
T ss_pred CHHHHHHCCHHHHHHCEECCEEEEEEEECCEEEEEEECHHHC--CCCCCHHHHHHH
T ss_conf 643365478988974689998999988634579999907623--799999999988
No 28
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=98.97 E-value=1.4e-08 Score=67.46 Aligned_cols=167 Identities=15% Similarity=0.147 Sum_probs=97.7
Q ss_pred CCCCCEEEECCC--CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH---HHCCCCCEEEEC-CHHHHHHHHHHHCCCCC
Q ss_conf 458808998189--989999999999987598621000013566765---210666557504-22332343310000123
Q gi|254780563|r 24 NTTKYLTLYTDQ--NQSVMLPIIHSFEERTGVKISPIYTSSIQRPPI---TQGSPVDVIITK-DETSLALNEDLLHKLPA 97 (195)
Q Consensus 24 ~~~~~lvVYs~~--~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~---~~~~~~d~~~~~-d~~~l~~~~~~l~~~~~ 97 (195)
.+.++|+|+... ..+.+.+++++||+++||+|++...+.....+. ..+...|+++.. +........|++.++..
T Consensus 2 ~e~gtltvW~~~~~~~~~l~e~~~~Fe~~~gIkV~i~~~~d~~~kl~t~~asG~~PDV~~~~~~~~~~~~~~G~l~dL~~ 81 (494)
T 1y4c_A 2 IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITP 81 (494)
T ss_dssp --CCEEEEECCTTSCHHHHHHHHHHHHHHHCCEEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCCC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCC
T ss_conf 97638999967983379999999997006394799985887999999998669998599999188999998889341892
Q ss_pred CCC--CCCCCCCC---CCCCCC--CCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC--HHH--CCEEEECCCCCCHHHHHH
Q ss_conf 422--23472000---122222--3443450588873344013445578888408--667--685996289830499999
Q gi|254780563|r 98 HLI--KKNSFVLK---NENKKL--MRISFDTQVLAYSTKRIKIADLPKSVFDLTN--AQW--KKRLSIAPNNISFHRLLN 166 (195)
Q Consensus 98 ~~~--~~~~~~~~---~~~~~~--~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~--p~~--kG~i~~~~~~~s~~~~~~ 166 (195)
... +...+... ..+|.+ +|+.....++.||++.+. ++|++|+||.+ .++ +|....+-+......+..
T Consensus 82 ~~~~~d~~~~~~~~~~t~dGk~YgvP~~~~~~~l~YNkdl~~--e~P~Twde~~~~a~~~~~~g~~~~~~~~~~~~~~~~ 159 (494)
T 1y4c_A 82 DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP 159 (494)
T ss_dssp CHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHH
T ss_pred CHHHHHHCCHHHHHHCEECCEEEECCCEEEEEEEEECCCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 654475458888974558999960461112358997442345--886146789999887521587663147773066999
Q ss_pred HHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999608---------------------6999999999860887056
Q gi|254780563|r 167 TMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 167 a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
.+....| ...+.+|++.|..++...+
T Consensus 160 ~~~~~gg~~~~~d~~~~d~~~~~~n~~~~~eal~~l~~l~~~g~~~~ 206 (494)
T 1y4c_A 160 LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 206 (494)
T ss_dssp HHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99982773210234565544445577889999999999987389885
No 29
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=98.97 E-value=8.4e-09 Score=68.68 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=99.5
Q ss_pred CCCCCEEEECC--CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH-HH--HHHCCCCCEEEECCH-HHHHHHHHHHCCCCC
Q ss_conf 45880899818--9989999999999987598621000013566-76--521066655750422-332343310000123
Q gi|254780563|r 24 NTTKYLTLYTD--QNQSVMLPIIHSFEERTGVKISPIYTSSIQR-PP--ITQGSPVDVIITKDE-TSLALNEDLLHKLPA 97 (195)
Q Consensus 24 ~~~~~lvVYs~--~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~-~~--~~~~~~~d~~~~~d~-~~l~~~~~~l~~~~~ 97 (195)
.++++|+|+.. ...+.+++++++|++++||+|++...+.... +. ...++..|+++.... .......|++.++..
T Consensus 2 ~eeg~ltvW~~~~~~~~~l~e~~~~Fe~~~gI~V~i~~~~d~~~kl~~~~asG~~PDVi~~~~~~~~~~~~~G~l~dL~~ 81 (487)
T 1hsj_A 2 IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITP 81 (487)
T ss_dssp CCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHTTCSCSEEEEETTTHHHHHHHTCBCCBCC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCCC
T ss_conf 97628999967983279999999997527295899995887999999998679998599999188999998889411893
Q ss_pred CCC--CCCCCCCCC---CCCC--CCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC----HHHCCEEEECCCCCCHHHHHH
Q ss_conf 422--234720001---2222--23443450588873344013445578888408----667685996289830499999
Q gi|254780563|r 98 HLI--KKNSFVLKN---ENKK--LMRISFDTQVLAYSTKRIKIADLPKSVFDLTN----AQWKKRLSIAPNNISFHRLLN 166 (195)
Q Consensus 98 ~~~--~~~~~~~~~---~~~~--~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~----p~~kG~i~~~~~~~s~~~~~~ 166 (195)
... +...+...+ .+|. .+|+.....+++||++.+. ++|++|+||.+ .+-+|...+..+.........
T Consensus 82 ~~~~~d~~~~~~~~~~~~dGk~YgvP~~~~~~~l~YNkdl~~--~~P~Twdel~~~ak~~~~~g~~~~~~~~~~~~~~~~ 159 (487)
T 1hsj_A 82 DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP 159 (487)
T ss_dssp CHHHHTTBCHHHHHHTEETTEECEEEEEEECCEEEEEGGGCS--SCCSBSTTSHHHHHHHTTTTCEEECCCSSSHHHHHH
T ss_pred CHHHHHHCCHHHHHHCEECCEEEEEEECCCCEEEEEECCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 654475458888964369998999983154069999740024--786036677888888752156663146776511078
Q ss_pred HHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999608---------------------6999999999860887056
Q gi|254780563|r 167 TMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 167 a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
.+.+..| ...+.+|++.|..++...+
T Consensus 160 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~ 206 (487)
T 1hsj_A 160 LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 206 (487)
T ss_dssp HHHHTTCCSEEECSSSEEEEEETTSSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99871772433035565555433377889899999999997389885
No 30
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=98.96 E-value=6.5e-09 Score=69.33 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=91.2
Q ss_pred CCCEEEECCC---CHHHHHHHHHHHHHHC-CCCCCCCCHHHH---HHH---HHHHCCCCCEEEECC-HHHHHHHHHHHCC
Q ss_conf 8808998189---9899999999999875-986210000135---667---652106665575042-2332343310000
Q gi|254780563|r 26 TKYLTLYTDQ---NQSVMLPIIHSFEERT-GVKISPIYTSSI---QRP---PITQGSPVDVIITKD-ETSLALNEDLLHK 94 (195)
Q Consensus 26 ~~~lvVYs~~---~~~~~~~~~~~Fek~t-gIkV~~~~~~~~---~~~---~~~~~~~~d~~~~~d-~~~l~~~~~~l~~ 94 (195)
+.+||++++. ..+..+.++++|+|++ ||+|+++..+.. +++ +.......|++.... ........|++.+
T Consensus 27 ~gtit~w~~~~~~~~~~~~~~i~~Fek~~p~i~V~~~~~~~~~~~~~l~~~~~ag~~~pDi~~~~~~~~~~~~~~g~l~~ 106 (412)
T 3k01_A 27 SGTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTEVAWVADFASIGYLAP 106 (412)
T ss_dssp CEEEEEEECCCTTTHHHHHHHHHTHHHHCTTEEEEEEECCHHHHHHHHHHHHHTTSSCCSEEEEEHHHHHHHHHTTCBCC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCC
T ss_conf 60899995898125999999999999888392899997784789999999997399998699988288999997799354
Q ss_pred CCCCCCC----CCCCCCC---CCCCC--CCCCCCCEEEEEEEHHHHCCC--CCCCCHHHHCCH--HH---CCEEEECCCC
Q ss_conf 1234222----3472000---12222--234434505888733440134--455788884086--67---6859962898
Q gi|254780563|r 95 LPAHLIK----KNSFVLK---NENKK--LMRISFDTQVLAYSTKRIKIA--DLPKSVFDLTNA--QW---KKRLSIAPNN 158 (195)
Q Consensus 95 ~~~~~~~----~~~~~~~---~~~~~--~~~~~~~~~~~~~n~~~~~~~--~~P~sw~DL~~p--~~---kG~i~~~~~~ 158 (195)
+..-... ...+... ..+|. .+|+.....++.||++.++.. +.|++|+||.+- +. .|...+.-..
T Consensus 107 L~~~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~~~yn~d~~~~~gl~~p~Twde~~~~~~~~~~~~~~~~~~~~~ 186 (412)
T 3k01_A 107 LDGTPALDDGSDHLPQAAASTRYEGKTYAVPQVIDTLALFYNKELLTKAGVEVPGSVAELKTAAAEITEKTGATGLYLRG 186 (412)
T ss_dssp CTTSGGGCSCTTBCHHHHHTTEETTEECCEEEEEEECEEEEEHHHHHHHTCCCCSBHHHHHHHHHHHHHHHSCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHHHHCEECCEEEEEEEEEEEEEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 75101133567779999976389998999987502789997151343169999887899999999998742984178527
Q ss_pred CCHHHHHHHHHHHHC----------------HHHHHHHHHHHHHCCCC
Q ss_conf 304999999999608----------------69999999998608870
Q gi|254780563|r 159 ISFHRLLNTMEQTPN----------------KTVVQDFIKNITANEIL 190 (195)
Q Consensus 159 ~s~~~~~~a~~~~~G----------------~~~~~~~l~~l~~N~~~ 190 (195)
.....+...+....| ..++.++++.|..++..
T Consensus 187 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~ 234 (412)
T 3k01_A 187 DDPYWFLPYLYGEGGDLVDEKNKTVTVDDEAGVRAYRVIKDLVDSKAA 234 (412)
T ss_dssp SCGGGGHHHHHHTTCCSEETTTTEECTTSHHHHHHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 765999999997298500011432455608999999999999975898
No 31
>2zxt_A Maltose-binding periplasmic protein, linker, mitochondrial intermembrane space import...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=98.96 E-value=3.4e-09 Score=70.93 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=95.6
Q ss_pred CCCCCEEEECCC--CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEEC-CHHHHHHHHHHHCCCCC
Q ss_conf 458808998189--98999999999998759862100001356676---5210666557504-22332343310000123
Q gi|254780563|r 24 NTTKYLTLYTDQ--NQSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITK-DETSLALNEDLLHKLPA 97 (195)
Q Consensus 24 ~~~~~lvVYs~~--~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~-d~~~l~~~~~~l~~~~~ 97 (195)
.++++|+|+.+. ..+.+++++++|++++||+|+++..+.....+ ...++..|++... +........|++.++..
T Consensus 2 ~eeg~LtvW~~~~~~~~~l~~~~~~Fe~~~gI~V~~~~~~d~~~kl~t~~asG~~PDVi~~~~~~~~~~~~~G~l~dL~~ 81 (465)
T 2zxt_A 2 IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITP 81 (465)
T ss_dssp -CCSCEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCSSHHHHHHHHHHSSCCCSEEEEEGGGHHHHHHTTCBCCCCC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCC
T ss_conf 87638999968982279999999997235294799984887999999998669988599999088999998789331891
Q ss_pred CC--CCCCCCCCC---CCCCCC--CCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHH----CCEEEECCCCCCHHHHHH
Q ss_conf 42--223472000---122222--3443450588873344013445578888408667----685996289830499999
Q gi|254780563|r 98 HL--IKKNSFVLK---NENKKL--MRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQW----KKRLSIAPNNISFHRLLN 166 (195)
Q Consensus 98 ~~--~~~~~~~~~---~~~~~~--~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~----kG~i~~~~~~~s~~~~~~ 166 (195)
.. .+...+... ..+|.. +|+.....++.||++.+. ++|++|+||.+-.- +|...+.-.......+..
T Consensus 82 ~~~~~d~~~~~~~~~~~~dGk~YgvP~~~~~~~~~YNkdl~~--e~P~Twdel~~~a~~~~~~g~~~~~~~~~~~~~~~~ 159 (465)
T 2zxt_A 82 DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP 159 (465)
T ss_dssp CHHHHTTBCHHHHHTTBSSSSBCSEEEEEECCEEECBTTTBS--SCCSSSTTSHHHHTTSCSSSCCSBCCCSSSHHHHHH
T ss_pred CHHHHHHCCHHHHHHCEECCEEEECCEEEEEEEEEEECCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 643465448888975469999971664610069999544345--784037899999887541487652046775233689
Q ss_pred HHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999608---------------------6999999999860887056
Q gi|254780563|r 167 TMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 167 a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
.+....| ...+.++++.|..++...+
T Consensus 160 ~~~~~gg~~~~~~~~~~~~~~~~~~s~~~~~al~~l~~l~~~g~~~~ 206 (465)
T 2zxt_A 160 LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 206 (465)
T ss_dssp HHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99973672001345665444445477889999999999986389887
No 32
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.96 E-value=1.1e-08 Score=67.95 Aligned_cols=167 Identities=15% Similarity=0.148 Sum_probs=98.7
Q ss_pred CCCCCEEEECCC--CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEEC-CHHHHHHHHHHHCCCCC
Q ss_conf 458808998189--98999999999998759862100001356676---5210666557504-22332343310000123
Q gi|254780563|r 24 NTTKYLTLYTDQ--NQSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITK-DETSLALNEDLLHKLPA 97 (195)
Q Consensus 24 ~~~~~lvVYs~~--~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~-d~~~l~~~~~~l~~~~~ 97 (195)
.++++|+|+.+. ..+.+++++++||+++||+|++...+.....+ ...++..|++... +........|++.++..
T Consensus 2 ~eeg~ltvW~~~~~~~~~l~e~~~~Fe~~~gI~V~~~~~~~~~~kl~t~~~sg~~PDV~~~~~~~~~~~~~~g~l~dL~~ 81 (421)
T 1mh3_A 2 IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITP 81 (421)
T ss_dssp CCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCCC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCCC
T ss_conf 87648999967982489999999997226296799985888999999998669998699999189999998789330891
Q ss_pred CCC--CCCCCCCCC---CCCCC--CCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC--H--HHCCEEEECCCCCCHHHHHH
Q ss_conf 422--234720001---22222--3443450588873344013445578888408--6--67685996289830499999
Q gi|254780563|r 98 HLI--KKNSFVLKN---ENKKL--MRISFDTQVLAYSTKRIKIADLPKSVFDLTN--A--QWKKRLSIAPNNISFHRLLN 166 (195)
Q Consensus 98 ~~~--~~~~~~~~~---~~~~~--~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~--p--~~kG~i~~~~~~~s~~~~~~ 166 (195)
... +...+...+ .+|.. +|+.....++.||++.+. ++|++|+||.+ . +-+|...+.-..........
T Consensus 82 ~~~~~d~~~~~~~~~~~~dGk~ygvP~~~~~~~~~Ynkdl~~--~~P~Twdel~~~a~~~~~~~~~~~~~~~~~~~~~~~ 159 (421)
T 1mh3_A 82 DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP 159 (421)
T ss_dssp CHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHH
T ss_pred CHHHHHHCCHHHHHHCEECCEEEECCEEECCEEEEECCCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 633365558888975579999972223511147997100034--784147899999877531487762057775332589
Q ss_pred HHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999608---------------------6999999999860887056
Q gi|254780563|r 167 TMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 167 a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
.+....| ...+.+|++.|..++...+
T Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~ 206 (421)
T 1mh3_A 160 LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 206 (421)
T ss_dssp HHHHTTCEEEEECSSSEEEEEEETTSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99972773002345665544455577889999999999997489885
No 33
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=98.96 E-value=3.1e-09 Score=71.16 Aligned_cols=129 Identities=11% Similarity=0.193 Sum_probs=79.3
Q ss_pred HHHHCCCCCCCCEEEECCCCH--HHHHHHHHHHHHHC-CCCCCCCCHHHHHH----HHHHHCCCCCEEEE-CCHHH--HH
Q ss_conf 986124445880899818998--99999999999875-98621000013566----76521066655750-42233--23
Q gi|254780563|r 17 TEAFSTENTTKYLTLYTDQNQ--SVMLPIIHSFEERT-GVKISPIYTSSIQR----PPITQGSPVDVIIT-KDETS--LA 86 (195)
Q Consensus 17 ~~~~~~~~~~~~lvVYs~~~~--~~~~~~~~~Fek~t-gIkV~~~~~~~~~~----~~~~~~~~~d~~~~-~d~~~--l~ 86 (195)
.+++.+.+..-++.+.+..++ +.+++++++||++| ||+|+++..+..+. +... ++..|++.. .+... ..
T Consensus 9 ~~~~~~~~~~vti~~~~~~~e~~~~~~~l~~~F~~~~p~IkV~~~~~~~~~~~l~~~~~s-g~~PDi~~~~~~~~~~~~~ 87 (401)
T 2heu_A 9 EVLFQGPSSTVTIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNVPNAGEVLKTRVLA-GDVPDVVNIYPQSIELQEW 87 (401)
T ss_dssp --CCCCCCSSEEEEEECCCGGGHHHHHHHHHHHHHHCTTEEEEEECCTTHHHHHHHHHHT-TCCCSEEECCTTSHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHC-CCCCCEEEECCCHHHHHHH
T ss_conf 999976996689999658814899999999999987819599999699999999999977-9988399987875889999
Q ss_pred HHHHHHCCCCC-CCCCCCCCCCCC-----CCCCCCCCCCCEEEEEEEHHHHCCC--CCCCCHHHHCCH
Q ss_conf 43310000123-422234720001-----2222234434505888733440134--455788884086
Q gi|254780563|r 87 LNEDLLHKLPA-HLIKKNSFVLKN-----ENKKLMRISFDTQVLAYSTKRIKIA--DLPKSVFDLTNA 146 (195)
Q Consensus 87 ~~~~~l~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~~--~~P~sw~DL~~p 146 (195)
...|.|.++.. ...++..+.+.+ ...+.+|+.....++.||++.++.. ++|+||+||.+.
T Consensus 88 ~~~g~l~dL~~~~~~~~~~~~~~~~~~~dG~~y~vP~~~~~~~l~ynk~l~~e~g~~~P~Tw~el~~~ 155 (401)
T 2heu_A 88 AKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYGIYYNKDKFEELGLKVPETWDEFEQL 155 (401)
T ss_dssp HHTTCBCCCTTCGGGGGBCTTTGGGGCBTTBCCCEECBBCCEEEEEEHHHHHHHTCCCCCSHHHHHHH
T ss_pred HHCCCCCCCCCHHHHHHCCHHHHHHCEECCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 97798134884575765448889755689988731311462799996404200387787105899999
No 34
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A 2e5e_A
Probab=98.95 E-value=1.1e-08 Score=68.12 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=97.4
Q ss_pred CCCCEEEECC--CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH---HHCCCCCEEEECC-HHHHHHHHHHHCCCCCC
Q ss_conf 5880899818--9989999999999987598621000013566765---2106665575042-23323433100001234
Q gi|254780563|r 25 TTKYLTLYTD--QNQSVMLPIIHSFEERTGVKISPIYTSSIQRPPI---TQGSPVDVIITKD-ETSLALNEDLLHKLPAH 98 (195)
Q Consensus 25 ~~~~lvVYs~--~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~---~~~~~~d~~~~~d-~~~l~~~~~~l~~~~~~ 98 (195)
++++|+|+.. ...+.+++++++||+++||+|+++..+.....+. ..++..|++.... ....+...|++.++...
T Consensus 3 e~g~ltvW~~~~~~~~~l~~~~~~Fe~~~gI~V~~~~~~~~~~kl~~~~~sG~~PDv~~~~~~~~~~~~~~g~l~~L~~~ 82 (581)
T 3o3u_N 3 EEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPD 82 (581)
T ss_dssp CTTEEEEECCTTSCHHHHHHHHHHHHHHHCCEEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCEEECCCC
T ss_conf 42399999789823899999999862252948999958879999999986799886999990899999988896258946
Q ss_pred CC--CCCCCCC---CCCCCC--CCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC--HHH--CCEEEECCCCCCHHHHHHH
Q ss_conf 22--2347200---012222--23443450588873344013445578888408--667--6859962898304999999
Q gi|254780563|r 99 LI--KKNSFVL---KNENKK--LMRISFDTQVLAYSTKRIKIADLPKSVFDLTN--AQW--KKRLSIAPNNISFHRLLNT 167 (195)
Q Consensus 99 ~~--~~~~~~~---~~~~~~--~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~--p~~--kG~i~~~~~~~s~~~~~~a 167 (195)
.. +...+.. ...+|. .+|......++.||++.++ ++|++|+||.+ .+. +|...+.-.......+...
T Consensus 83 ~~~~d~~~~~~~~~~~~dG~~ygiP~~~~~~~l~ynkdl~~--e~P~Twdel~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 160 (581)
T 3o3u_N 83 KAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL 160 (581)
T ss_dssp HHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHH
T ss_pred HHHHHHCCHHHHHHCEECCEEEEEEEECCEEEEEEECCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 34354558886863189999999999731479999872255--8997578877755433125877632577753001356
Q ss_pred HHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 999608---------------------6999999999860887056
Q gi|254780563|r 168 MEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 168 ~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
+.+..| ..++.+|++.|..++...+
T Consensus 161 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~ 206 (581)
T 3o3u_N 161 IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 206 (581)
T ss_dssp HHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 7641771102345665445445477889999999999997389888
No 35
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=98.94 E-value=8.3e-09 Score=68.69 Aligned_cols=123 Identities=17% Similarity=0.133 Sum_probs=73.1
Q ss_pred CEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-CCCCCEEEECCHHHHH--HHHHHHCCCCCCCCCCC
Q ss_conf 089981899-8999999999998759862100001356676521-0666557504223323--43310000123422234
Q gi|254780563|r 28 YLTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQ-GSPVDVIITKDETSLA--LNEDLLHKLPAHLIKKN 103 (195)
Q Consensus 28 ~lvVYs~~~-~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~-~~~~d~~~~~d~~~l~--~~~~~l~~~~~~~~~~~ 103 (195)
||+||++.+ ...+++++++|||+|||+|+++.+++.+.+.+.+ +.++|++++.+..... ...++.......
T Consensus 1 el~v~~~~~~~~~~~~l~~~Fek~tGi~V~~~~g~sg~l~~~i~~g~~~D~~~~~~~~~~~~~~~~g~~~~~~~~----- 75 (231)
T 1atg_A 1 ELKVVTATNFLGTLEQLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRF----- 75 (231)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCE-----
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCCCCEE-----
T ss_conf 979999516699999999999985298899998888999999984999849996666667889861442346426-----
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCC--HHHHHHHHHHHH
Q ss_conf 720001222223443450588873344013445578888408667685996289830--499999999960
Q gi|254780563|r 104 SFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNIS--FHRLLNTMEQTP 172 (195)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s--~~~~~~a~~~~~ 172 (195)
.+.. ...++... +....|.+|+||++|.|+. ++++++..+ +......+....
T Consensus 76 ------------~~~~--~~~~~~~~--~~~~~~~~~~~l~~~~~~~-i~~~~p~~~~~g~~~~~~~~~~~ 129 (231)
T 1atg_A 76 ------------TYAI--GKLVLWSA--KPGLVDNQGKVLAGNGWRH-IAISNPQIAPYGLAGTQVLTHLG 129 (231)
T ss_dssp ------------EEEE--CCEEEEES--STTTSCTTSGGGGSSSCSC-EEEECTTTCHHHHHHHHHHHHTT
T ss_pred ------------EEEC--CEEEEEEC--CCCCCCCCHHHHCCCCCCE-EEEECCCCCCCHHHHHHHHHHCC
T ss_conf ------------7630--22898624--7777888688827754787-99968987820689999998728
No 36
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A* 3g7v_A*
Probab=98.93 E-value=1.9e-08 Score=66.71 Aligned_cols=165 Identities=14% Similarity=0.138 Sum_probs=98.2
Q ss_pred CCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEECCH-HHHHHHHHHHCCCCCCC
Q ss_conf 88089981899--8999999999998759862100001356676---521066655750422-33234331000012342
Q gi|254780563|r 26 TKYLTLYTDQN--QSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITKDE-TSLALNEDLLHKLPAHL 99 (195)
Q Consensus 26 ~~~lvVYs~~~--~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~d~-~~l~~~~~~l~~~~~~~ 99 (195)
+++|+|+.+.+ .+...+++++||+++||+|++...+.....+ ...++..|++..... .......|++.++....
T Consensus 2 ~g~ltvW~~~~~~~~~l~~~~~~Fe~~~gI~V~i~~~~~~~~kl~~~~~sG~~PDvi~~~~~~~~~~~~~G~l~dL~~~~ 81 (461)
T 3csg_A 2 TGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK 81 (461)
T ss_dssp --CEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEHHHHHHHHHTTCBCCCCCCH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCCCCH
T ss_conf 46999996898148999999999721529679999588799999999867998869999918899999888942289164
Q ss_pred C--CCCCCCCCC---CCC--CCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCH----HHCCEEEECCCCCCHHHHHHHH
Q ss_conf 2--234720001---222--2234434505888733440134455788884086----6768599628983049999999
Q gi|254780563|r 100 I--KKNSFVLKN---ENK--KLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA----QWKKRLSIAPNNISFHRLLNTM 168 (195)
Q Consensus 100 ~--~~~~~~~~~---~~~--~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p----~~kG~i~~~~~~~s~~~~~~a~ 168 (195)
. +...+...+ .+| +.+|......++.||++.+. ++|++|+||..- +-+|...+.-+......+...+
T Consensus 82 ~~~~~~~~~~~~~~~~dGk~YgvP~~~~~~~l~YNkdl~~--~~P~Twdel~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (461)
T 3csg_A 82 AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLI 159 (461)
T ss_dssp HHHTTBCHHHHHTTEETTEECSEEEEEECCEEEEETTTCS--SCCSBGGGHHHHHHHHHTTTCEEECCCTTCHHHHHHHH
T ss_pred HHHHHCCHHHHHHCEECCEEEECCEEECCEEEEEECCCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 4465448887975579998983764702169999764445--78840689999998634127776335777642124789
Q ss_pred HHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 99608---------------------6999999999860887056
Q gi|254780563|r 169 EQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 169 ~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
.+..| ...+.+|++.|..++...+
T Consensus 160 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~ 204 (461)
T 3csg_A 160 AADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 204 (461)
T ss_dssp HHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 860781002355665444455576889999999999986288664
No 37
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=98.93 E-value=2.8e-08 Score=65.66 Aligned_cols=168 Identities=13% Similarity=0.163 Sum_probs=93.1
Q ss_pred CCCCCCCCEEEECCCCH----HHHHHHHHHHHHHCCCCCCCCCHHHH---HHHH--HHHCCCCCEEEEC-CHHHHHHHHH
Q ss_conf 24445880899818998----99999999999875986210000135---6676--5210666557504-2233234331
Q gi|254780563|r 21 STENTTKYLTLYTDQNQ----SVMLPIIHSFEERTGVKISPIYTSSI---QRPP--ITQGSPVDVIITK-DETSLALNED 90 (195)
Q Consensus 21 ~~~~~~~~lvVYs~~~~----~~~~~~~~~Fek~tgIkV~~~~~~~~---~~~~--~~~~~~~d~~~~~-d~~~l~~~~~ 90 (195)
.+.+...+|+|++.... +..+.++++|++++||+|+++..+.. +++. ...++..|++... +........|
T Consensus 13 ~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~f~~~~~i~V~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g 92 (397)
T 2zyo_A 13 KSEGKPDKLVVWENADDGVQLNNTKKWAGEFTKKTGIQVEVVPVALLKQQEKLTLDGPAGKGADLVTWPHDRLGEAVTKG 92 (397)
T ss_dssp CCSCCCSEEEEEECSSCHHHHHHHHHHHHHHHHHHCCEEEEEECCGGGHHHHHHHHHHHTCCCSEEEEEGGGHHHHHHTT
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCC
T ss_conf 87899849999965897457999999999998715978999979827999999999866999869998969999999889
Q ss_pred HHCCCCCCC--CCCCCCCCCC---CCCCC--CCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC------HHHCCEEEECCC
Q ss_conf 000012342--2234720001---22222--3443450588873344013445578888408------667685996289
Q gi|254780563|r 91 LLHKLPAHL--IKKNSFVLKN---ENKKL--MRISFDTQVLAYSTKRIKIADLPKSVFDLTN------AQWKKRLSIAPN 157 (195)
Q Consensus 91 ~l~~~~~~~--~~~~~~~~~~---~~~~~--~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~------p~~kG~i~~~~~ 157 (195)
++.++.... .+...+...+ .+|.. +|+.....++.||++.+. ++|++|+||.. ..-.+...+.-+
T Consensus 93 ~l~~l~~~~~~~~~~~~~~~~~~~~dG~~y~vP~~~~~~~~~ynkdl~~--~~p~t~~e~~~~~~~~~~~~~~~~~~~~~ 170 (397)
T 2zyo_A 93 LLQPIQVDNSVKNQFDDVAMKALTYGGKLYGLPKAIESVALIYNKKLMG--QVPATYDELFQYAKANNKPDEQKYGVLFE 170 (397)
T ss_dssp CEECCCCCHHHHTTBCHHHHHHTEETTEECEEEEEEECCEEEEETTTCS--SCCSBHHHHHHHHHHHCBGGGTBEEEEEC
T ss_pred CCCCCCCCHHHHHHCCHHHHHHCEECCEEEEEEEECCCEEEEEECCCCC--CCCCCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 9644885766676478988963579988999877446507998334452--00001699999999964246783464147
Q ss_pred CCCHHHHHHHHHHHHC---------------------HHHHHHHHHHHHHCCCC
Q ss_conf 8304999999999608---------------------69999999998608870
Q gi|254780563|r 158 NISFHRLLNTMEQTPN---------------------KTVVQDFIKNITANEIL 190 (195)
Q Consensus 158 ~~s~~~~~~a~~~~~G---------------------~~~~~~~l~~l~~N~~~ 190 (195)
...+......+....| ...+.++++.+..++..
T Consensus 171 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (397)
T 2zyo_A 171 ANNFYYTYFLFAAKGAAVFKEQDGTLDPNEIGLNSPEAVQGMNEVQKWFTEARL 224 (397)
T ss_dssp TTCHHHHHHHHHHTTCCSEEEETTEEEEEEECTTSHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 887532012221147732245788633101023678889999999999864777
No 38
>2gha_A Maltose ABC transporter, periplasmic maltose- binding protein; periplasmic binding protein, MBP, maltotriose, sugar binding protein; HET: MLR; 1.60A {Thermotoga maritima MSB8} PDB: 2ghb_A 2fnc_A*
Probab=98.92 E-value=2.4e-08 Score=66.05 Aligned_cols=165 Identities=13% Similarity=0.184 Sum_probs=95.6
Q ss_pred CCCEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCHHHH---HHH-HH-HHCCCCCEEEECCH-HHHHHHHHHHCCCCCC
Q ss_conf 88089981899-899999999999875986210000135---667-65-21066655750422-3323433100001234
Q gi|254780563|r 26 TKYLTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSSI---QRP-PI-TQGSPVDVIITKDE-TSLALNEDLLHKLPAH 98 (195)
Q Consensus 26 ~~~lvVYs~~~-~~~~~~~~~~Fek~tgIkV~~~~~~~~---~~~-~~-~~~~~~d~~~~~d~-~~l~~~~~~l~~~~~~ 98 (195)
..+|||+++.. .+.++.++++||++|||+|++...+.. +.+ .. ..+...|+++.... .......|++.++..-
T Consensus 2 ~~~lt~W~~~~~~~~~~~~~~~Fe~~~gi~V~~~~~~~~~~~~~l~~~~~sg~~pDv~~~~~~~~~~~~~~g~l~~L~~~ 81 (382)
T 2gha_A 2 QPKLTIWCSEKQVDILQKLGEEFKAKYGVEVEVQYVNFQDIKSKFLTAAPEGQGADIIVGAHDWVGELAVNGLIEPIPNF 81 (382)
T ss_dssp CCEEEEEECTTTHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHGGGTCSCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCEEECCCH
T ss_conf 88899996887689999999999873598799997883899999999986799980999892889999988894438646
Q ss_pred C-CCCCCCCCC---CCCC--CCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCH--HHC-----CEEEECCCCCCHHHHH
Q ss_conf 2-223472000---1222--2234434505888733440134455788884086--676-----8599628983049999
Q gi|254780563|r 99 L-IKKNSFVLK---NENK--KLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA--QWK-----KRLSIAPNNISFHRLL 165 (195)
Q Consensus 99 ~-~~~~~~~~~---~~~~--~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p--~~k-----G~i~~~~~~~s~~~~~ 165 (195)
. .....+... ..+| +.+|......++.||++.+.. +|++|+||.+- +++ +...+..+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~dG~~y~vP~~~~~~~~~ynkd~~~~--~~~t~de~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (382)
T 2gha_A 82 SDLKNFYETALNAFSYGGKLYGIPYAMEAIALIYNKDYVPE--PPKTMDELIEIAKQIDEEFGGEVRGFITSAAEFYYIA 159 (382)
T ss_dssp TTGGGBCHHHHHHTEETTEECCEEEEEECCEEEEETTTCSS--CCSBHHHHHHHHHHHHHHTTTSSEEEECCTTCHHHHH
T ss_pred HHHHHCCHHHHHHCEECCEEEEEEEECCCCCEEECHHHCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 75643389889643799889998632034320242221247--9965799999999977630874114546742013469
Q ss_pred HHHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 99999608---------------------6999999999860887056
Q gi|254780563|r 166 NTMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 166 ~a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
..+.+..| ..++.+|++.|...+...+
T Consensus 160 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~ 207 (382)
T 2gha_A 160 PFIFGYGGYVFKQTEKGLDVNDIGLANEGAIKGVKLLKRLVDEGILDP 207 (382)
T ss_dssp HHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999964996334556775533446689999999999998876278883
No 39
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=98.87 E-value=6.2e-08 Score=63.74 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=95.4
Q ss_pred CCCCCCCEEEECC-----CCHHHHHHHHHHHHHHC-CCCCCCCCHHH--HHHHH--HHHCCCCCEEEEC--CHHHHHHHH
Q ss_conf 4445880899818-----99899999999999875-98621000013--56676--5210666557504--223323433
Q gi|254780563|r 22 TENTTKYLTLYTD-----QNQSVMLPIIHSFEERT-GVKISPIYTSS--IQRPP--ITQGSPVDVIITK--DETSLALNE 89 (195)
Q Consensus 22 ~~~~~~~lvVYs~-----~~~~~~~~~~~~Fek~t-gIkV~~~~~~~--~~~~~--~~~~~~~d~~~~~--d~~~l~~~~ 89 (195)
......+|+|++. ........++++|++++ ||+|++..... .+.+. ...+...|++... +....+.+.
T Consensus 3 ~~~~p~tl~~~~~~~~~~~~~~~~~~~v~~F~~~~p~i~V~~~~~~~~~~~~~~~~~~~g~~pDv~~~~~~~~~~~~~~~ 82 (405)
T 3i3v_A 3 LDSDPDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSRLARKEADVVMVNLYDKTLAWTDV 82 (405)
T ss_dssp ----CCSEEEEESCSSSSTTHHHHHHHHHHHHHHSTTCCEEEEECSTTHHHHHHHHHHTTCCCSEEEECCSTTTTTTTTT
T ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC
T ss_conf 89999869999707888866799999999999888294999972786199999999976999868998483889999987
Q ss_pred HHHCCCCC-----CCCCCCCC----CCCCCCCCC--CCCCCCEEEEEEEHHHHCCC---CCCCCHHHHCC--HH--HCCE
Q ss_conf 10000123-----42223472----000122222--34434505888733440134---45578888408--66--7685
Q gi|254780563|r 90 DLLHKLPA-----HLIKKNSF----VLKNENKKL--MRISFDTQVLAYSTKRIKIA---DLPKSVFDLTN--AQ--WKKR 151 (195)
Q Consensus 90 ~~l~~~~~-----~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~n~~~~~~~---~~P~sw~DL~~--p~--~kG~ 151 (195)
|++.++.. ...+...+ .....+|.. +|+.....++.||++.++.. .+|++|+||.+ .+ -+|.
T Consensus 83 G~l~dL~~~~~~~~~~~~~~~~~~~~~~~~dG~~y~lP~~~~~~~l~Ynkd~~~~aGi~~~P~Twde~~~~~~~l~~~g~ 162 (405)
T 3i3v_A 83 GATVDVKPYLDDWGLRGRVLPAALADWTDDEGRVRAFPYFATNWPVAYNRALLDRAGVDAIPTTGDQLIAAARKLRAKGI 162 (405)
T ss_dssp TSSCCCHHHHHHTTCTTTBCHHHHHHTBCTTSCBCSBCCEEEEECEEEEHHHHHHHTCCSCCCBHHHHHHHHHHHHHTTC
T ss_pred CCEEECCHHHHHCCHHHHCCHHHHHHHCCCCCEEEEEEEECCCEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99204808665242133208899997115298799997516735999980775641899999988999999999985297
Q ss_pred EEECCCCC--CHHHHHHHHHHH-HC-----------------HHHHHHHHHHHHHCCCCC
Q ss_conf 99628983--049999999996-08-----------------699999999986088705
Q gi|254780563|r 152 LSIAPNNI--SFHRLLNTMEQT-PN-----------------KTVVQDFIKNITANEILT 191 (195)
Q Consensus 152 i~~~~~~~--s~~~~~~a~~~~-~G-----------------~~~~~~~l~~l~~N~~~~ 191 (195)
..+.-... .+..+...+... .| ...+.+|++.|..++.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~ 222 (405)
T 3i3v_A 163 APVTVGGNDWTGQKLLAQIIQTFLSQDEARHVYSTGDFGVRGARLGIEYFAHLRDAGVFA 222 (405)
T ss_dssp EEEECCTTSHHHHHHHHHHHGGGCCHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHTTCBC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 753145787413568999999751653321224566546677999999999998648765
No 40
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli} PDB: 1mg1_A*
Probab=98.84 E-value=6.8e-08 Score=63.50 Aligned_cols=167 Identities=13% Similarity=0.141 Sum_probs=96.9
Q ss_pred CCCCCEEEECC--CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH--H-HHCCCCCEEEECCH-HHHHHHHHHHCCCCC
Q ss_conf 45880899818--998999999999998759862100001356676--5-21066655750422-332343310000123
Q gi|254780563|r 24 NTTKYLTLYTD--QNQSVMLPIIHSFEERTGVKISPIYTSSIQRPP--I-TQGSPVDVIITKDE-TSLALNEDLLHKLPA 97 (195)
Q Consensus 24 ~~~~~lvVYs~--~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~--~-~~~~~~d~~~~~d~-~~l~~~~~~l~~~~~ 97 (195)
.++++|+|+.+ ...+.+.+++++||+++||+|++...+.....+ . ..++..|+++.... .......|++.++..
T Consensus 2 ~eeg~LtiW~~~~~~~~~l~e~~~~Fe~~~gIkV~~~~~~d~~~kl~t~~~sG~~PDV~~~~~~~~~~~~~~G~l~dL~d 81 (568)
T 3h4z_A 2 IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITP 81 (568)
T ss_dssp CCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHGGGTCSCSEEEEEHHHHHHHHHHTCBCCCCC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCEEECCC
T ss_conf 87748999977983279999999986016495899983887999999998669998599999188999998889513882
Q ss_pred CCC--CCCCCCCCC---CCC--CCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC--HHH--CCEEEECCCCCCHHHHHH
Q ss_conf 422--234720001---222--223443450588873344013445578888408--667--685996289830499999
Q gi|254780563|r 98 HLI--KKNSFVLKN---ENK--KLMRISFDTQVLAYSTKRIKIADLPKSVFDLTN--AQW--KKRLSIAPNNISFHRLLN 166 (195)
Q Consensus 98 ~~~--~~~~~~~~~---~~~--~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~--p~~--kG~i~~~~~~~s~~~~~~ 166 (195)
... +...+...+ .+| +.+|......++.||++.+. ++|++|+||.+ .+. +|.....-..........
T Consensus 82 ~~~~~d~~~~~~~~~~~~dGk~YgiP~~~~~~~l~YNkdlfe--e~P~Twdel~~~akk~~~~g~~~~~~~~~~~~~~~~ 159 (568)
T 3h4z_A 82 AAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP 159 (568)
T ss_dssp CHHHHTTBCTHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHH
T ss_pred CHHHHHHCCHHHHHHCEECCEEEEEEEECCEEEEEEECCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 223253468887864289989999999711149999885455--799868999986654312588763147774066788
Q ss_pred HHHHHHC---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999608---------------------6999999999860887056
Q gi|254780563|r 167 TMEQTPN---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 167 a~~~~~G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
.+.+..| ..++.+|++.|..++...+
T Consensus 160 ~~~~~gg~~~~~~~g~~d~~~~~~~~~~~~~al~~~~~l~~~~~~~~ 206 (568)
T 3h4z_A 160 LIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 206 (568)
T ss_dssp HHHHTTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88850772122147875555445577899999999999987389885
No 41
>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=98.84 E-value=1.7e-08 Score=66.98 Aligned_cols=148 Identities=7% Similarity=0.026 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC-HHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 02599999999999998612444588089981899-899999999999875-9862100001356676521066655750
Q gi|254780563|r 2 FKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQN-QSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVIIT 79 (195)
Q Consensus 2 mkk~~~~~l~l~~~~~~~~~~~~~~~~lvVYs~~~-~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~~ 79 (195)
|+|.++..++.+++.+..++..+++++|+|+.+.+ ..+++.+.++|++++ |++|++..+++.+.+....+..+|+.+.
T Consensus 3 ~~~~~l~~~~a~~~~~~~~~~~a~~~~i~i~gs~s~~~l~~~l~~~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~~~ 82 (290)
T 1twy_A 3 LIRMALAAVCALLFSITTMTPFVQASEITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMT 82 (290)
T ss_dssp -------------------------CEEEEEECHHHHHHHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCC
T ss_conf 68999999999999998354302488699996054999999999999988889579997168679999998268641225
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHC---------C--CCCCCCHHHHCCHHH
Q ss_conf 42233234331000012342223472000122222344345058887334401---------3--445578888408667
Q gi|254780563|r 80 KDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIK---------I--ADLPKSVFDLTNAQW 148 (195)
Q Consensus 80 ~d~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~---------~--~~~P~sw~DL~~p~~ 148 (195)
..... .... ...-...++.....++++|++--. . ...+++|.|+..|..
T Consensus 83 s~~~~---~~e~-----------------~~~~~~~~ia~~~~~ivv~~~n~~~~ls~~~L~~i~~g~it~W~~~~~~~~ 142 (290)
T 1twy_A 83 SRYLT---ESEA-----------------QNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQ 142 (290)
T ss_dssp SSCCC---TTTC-----------------CTTCEEEEEEEEEEEEEECTTCCCCEECHHHHHHHHHTSCCBGGGGTSCSC
T ss_pred CCCCH---HHHH-----------------HCCCEEEEEEECCEEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCCC
T ss_conf 54001---3466-----------------345056778860257640577852345898985644287675310489988
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 685996289830499999999
Q gi|254780563|r 149 KKRLSIAPNNISFHRLLNTME 169 (195)
Q Consensus 149 kG~i~~~~~~~s~~~~~~a~~ 169 (195)
+..+..+++++.....+..++
T Consensus 143 ~i~~~~r~~~Sgt~~~~~~~~ 163 (290)
T 1twy_A 143 KIAVVTREASSGTRYSFESLM 163 (290)
T ss_dssp BCEEEEECTTCHHHHHHHHHH
T ss_pred CEEEECCCCCCCHHHHHHHHH
T ss_conf 417852799972799999996
No 42
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=98.82 E-value=1e-08 Score=68.23 Aligned_cols=123 Identities=21% Similarity=0.280 Sum_probs=75.9
Q ss_pred CCCEEEECCC-CHHHHHHHHHHHHHHCCCCCCCCCHHHHH---HH---HHHHCCCCCEEEEC-CHHHHHHHHHHHCCCCC
Q ss_conf 8808998189-98999999999998759862100001356---67---65210666557504-22332343310000123
Q gi|254780563|r 26 TKYLTLYTDQ-NQSVMLPIIHSFEERTGVKISPIYTSSIQ---RP---PITQGSPVDVIITK-DETSLALNEDLLHKLPA 97 (195)
Q Consensus 26 ~~~lvVYs~~-~~~~~~~~~~~Fek~tgIkV~~~~~~~~~---~~---~~~~~~~~d~~~~~-d~~~l~~~~~~l~~~~~ 97 (195)
..+|++|+.. .....++++++|+|++||+|++...+..+ ++ +.. +...|++... +........|.+.++..
T Consensus 34 ~~~it~~~~~~~~~~~~~~~~~Fek~~gi~V~~~~~~~~~~~~kl~~~~~s-g~~pDi~~~~~~~~~~~~~~g~l~~l~~ 112 (416)
T 2xd3_A 34 VKELTVYVDEGYKSYIEEVAKAYEKEAGVKVTLKTGDALGGLDKLSLDNQN-GNVPDVMMAPYDRVGSLGSDGQLSEVKL 112 (416)
T ss_dssp --CCEEEECGGGHHHHHHHHHHHHHHSSCCCEEEECCHHHHHHTHHHHHHH-SCCCSEEEEEHHHHHHHHHTTCBCCCCC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHC-CCCCEEEEECCHHHHHHHHCCCCCCCCH
T ss_conf 728999978982599999999987541957999979937999999999867-9988399989288999997798030886
Q ss_pred CCCCCCC----CCCCCCCCC--CCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCE
Q ss_conf 4222347----200012222--23443450588873344013445578888408667685
Q gi|254780563|r 98 HLIKKNS----FVLKNENKK--LMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKR 151 (195)
Q Consensus 98 ~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~ 151 (195)
....... ......+|. .+|+.....++.||++.++. +|++|+||.+..-+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~dGk~y~vP~~~~~~~~~yn~d~~~~--~P~T~~e~~~~~~~~k 170 (416)
T 2xd3_A 113 SDGAKTDDTTKSLVTAANGKVYGAPAVIESLVMYYNKDLVKD--APKTFADLENLAKDSK 170 (416)
T ss_dssp CGGGCCCHHHHHHHBCTTCCBCCEEEEEECCEEEEETTTCSS--CCCBHHHHHHHHHSGG
T ss_pred HHHHHHCCCCHHHHCCCCCEEEEEEECCCEEEEEEECCCCCC--CCCCHHHHHHHHHHHH
T ss_conf 675311200087620559818999613634799996765557--9987788999999988
No 43
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=98.80 E-value=4.8e-08 Score=64.36 Aligned_cols=163 Identities=13% Similarity=0.201 Sum_probs=92.9
Q ss_pred CCCEEEECCCCHH---HHHHHHHHHHHHCCCCCCCCC-HH--H-HHHHH--HHHCCCCCEEEECCHH--HHHHHHHHHCC
Q ss_conf 8808998189989---999999999987598621000-01--3-56676--5210666557504223--32343310000
Q gi|254780563|r 26 TKYLTLYTDQNQS---VMLPIIHSFEERTGVKISPIY-TS--S-IQRPP--ITQGSPVDVIITKDET--SLALNEDLLHK 94 (195)
Q Consensus 26 ~~~lvVYs~~~~~---~~~~~~~~Fek~tgIkV~~~~-~~--~-~~~~~--~~~~~~~d~~~~~d~~--~l~~~~~~l~~ 94 (195)
..+|+|+++.... .++.++++|+++||+.+..+. .. . .+++. ...++..|++...+.. ......|++.+
T Consensus 29 ~~titv~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~ag~~pDv~~~~~~~~~~~~~~~G~l~~ 108 (402)
T 1urs_A 29 GQTITVWSWQTGPELQDVKQIAAQWAKAHGDKVIVVDQSSNPKGFQFYATAARTGKGPDVVFGMPHDNNGVFAEEGLMAP 108 (402)
T ss_dssp -CEEEEEESCCHHHHHHHHHHHHHHHHHHCCEEEEEECTTCTTCTTHHHHHHHTTCCCSEEEEEEGGGHHHHHHTTCBCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCC
T ss_conf 98599996788414999999999999987998999983883899999999996699983999858478999998799564
Q ss_pred CCCCCCC--CCCCCCCC---CCCC--CCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHH-HHHH
Q ss_conf 1234222--34720001---2222--2344345058887334401344557888840866768599628983049-9999
Q gi|254780563|r 95 LPAHLIK--KNSFVLKN---ENKK--LMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFH-RLLN 166 (195)
Q Consensus 95 ~~~~~~~--~~~~~~~~---~~~~--~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~-~~~~ 166 (195)
+...... ...+...+ .+|. .+|+...+.++.||++.++ ++|++|+||.+...+..+........+. .++.
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~dGk~y~iP~~~~~~~~~yn~d~~~--~~p~tw~e~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (402)
T 1urs_A 109 VPSGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKKLVP--QPPQTWAEFVKDANAHGFMYDQANLYFDYAIIG 186 (402)
T ss_dssp CCTTSCCGGGSCHHHHHTTEETTEECSEEEEEEECEEEEETTTCS--SCCCSHHHHHHHHHHHCEECCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHCCHHHHHHCEECCEEEEEEECCCEEEEEEECCCCC--CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 842032154359888975489998999862155179999563434--486047889999986356678887045578887
Q ss_pred HHHH------------------HHCHHHHHHHHHHHHHCCCC
Q ss_conf 9999------------------60869999999998608870
Q gi|254780563|r 167 TMEQ------------------TPNKTVVQDFIKNITANEIL 190 (195)
Q Consensus 167 a~~~------------------~~G~~~~~~~l~~l~~N~~~ 190 (195)
+... ..+..++++|++.|..++..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 228 (402)
T 1urs_A 187 GYGGYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHW 228 (402)
T ss_dssp HTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 553255424886301332356888899999999999972577
No 44
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermophilic protein, periplasmic binding protein; HET: MLR; 1.95A {Thermus thermophilus HB27}
Probab=98.75 E-value=2.6e-07 Score=60.16 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=70.6
Q ss_pred CEEEECCCCH---HHHHHHHHHHHHHCCCCCCCCCHHHHH---HHH--HHHCCCCCEEEECCH--HHHHHHHHHHCCCCC
Q ss_conf 0899818998---999999999998759862100001356---676--521066655750422--332343310000123
Q gi|254780563|r 28 YLTLYTDQNQ---SVMLPIIHSFEERTGVKISPIYTSSIQ---RPP--ITQGSPVDVIITKDE--TSLALNEDLLHKLPA 97 (195)
Q Consensus 28 ~lvVYs~~~~---~~~~~~~~~Fek~tgIkV~~~~~~~~~---~~~--~~~~~~~d~~~~~d~--~~l~~~~~~l~~~~~ 97 (195)
+|+|+++... +..+.++++|++++||+|+++..+..+ ++. ...++..|+++..+. .......|++.++..
T Consensus 2 klt~W~~~~~~~~~~~~~~~~~Fe~~~gi~V~~~~~~~~~~~~kl~~~~~sg~~pD~v~~~~~~~~~~~~~~g~l~~L~~ 81 (386)
T 2gh9_A 2 KITVWTHFGGPELEWLKEQARTFERTSGTKVEVVEVPFAEIKQKFILGAPQGQAADLVVTVPHDWVGEMAQAGVLEPVGK 81 (386)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHHTTSCCEEEEECCHHHHHHHHHHHGGGTCSCSEEEEEEGGGHHHHHHTTCBCCCGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCHHHH
T ss_conf 89999489971599999999999986398899997894799999999996699987899948599999998799450156
Q ss_pred CCC----CCCCCCCC---CCCCCC--CCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC
Q ss_conf 422----23472000---122222--3443450588873344013445578888408
Q gi|254780563|r 98 HLI----KKNSFVLK---NENKKL--MRISFDTQVLAYSTKRIKIADLPKSVFDLTN 145 (195)
Q Consensus 98 ~~~----~~~~~~~~---~~~~~~--~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~ 145 (195)
-.. .+..+... ..+|.. +|+.....++.||++.++ +.|++|+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~G~~y~vP~~~~~~~l~ynkd~~~--e~~~t~~e~~~ 136 (386)
T 2gh9_A 82 YVTQAYLADLQGVAVEAFTFGGRLMGLPAFAESVALIYNKKYVK--EPPRTWEEFLA 136 (386)
T ss_dssp GSCHHHHHHBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCS--SCCSSHHHHHH
T ss_pred HHHHCCHHHCCHHHHHHEEECCEEEEEECCCCEEEEEEEHHHHH--HCCCCHHHHHH
T ss_conf 54122374458888864178998998633441379997334344--26876799999
No 45
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, structural genomics, PSI-2; HET: GTT CIT; 2.41A {Wolinella succinogenes}
Probab=98.70 E-value=5.2e-08 Score=64.18 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCCCCEEEECCCCH---HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHH--HHHHCCCCCC
Q ss_conf 45880899818998---999999999998759862100001356676521066655750422332343--3100001234
Q gi|254780563|r 24 NTTKYLTLYTDQNQ---SVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSLALN--EDLLHKLPAH 98 (195)
Q Consensus 24 ~~~~~lvVYs~~~~---~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~d~~~l~~~--~~~l~~~~~~ 98 (195)
+.+.||+|+++.+. .+++++.++||++|||+|+++.+++.+.+.+.+....|+++..+....... .+......
T Consensus 2 ~aa~~l~i~~~~S~~~~~l~~~l~~~Fe~~tgikV~~~~~~Sg~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (242)
T 3kn3_A 2 NAAAELRMATTTSTDNTGLLDVLAPAYKKDTGVDLKWVAVGTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRT-- 79 (242)
T ss_dssp --CCEEEEEEEHHHHHHTHHHHHHHHHHHHHSCEEEEEEECHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEE--
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCC--
T ss_conf 977568999972775231499999999998697799997784999998864788554304505479998715774123--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEE-ECCCCCCHH
Q ss_conf 2223472000122222344345058887334401344557888840866768599-628983049
Q gi|254780563|r 99 LIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLS-IAPNNISFH 162 (195)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~-~~~~~~s~~ 162 (195)
.......+++++.. ...+..+..|.|++++.+.+++. .+++.+++.
T Consensus 80 -----------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 126 (242)
T 3kn3_A 80 -----------------PVMYNDFVIIGNPS-FKQKFTGMSVAEAFKLIEKEQVKFVSRGDKSGT 126 (242)
T ss_dssp -----------------EEECSCEEEEECTH-HHHHHTTCCHHHHHHHHHHHTCCEEECCSSCHH
T ss_pred -----------------CHHHCCEEEEEECC-CCCCCCCCHHHHHHHHHHCCCCEECCCCCCHHH
T ss_conf -----------------11002303775247-765444311455433554057235589884599
No 46
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=98.56 E-value=4.3e-08 Score=64.61 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHH---HH---HHHHHHCCCCCEEEE-CCHHHHHHHHHHHCCCCCCCC---------CC
Q ss_conf 999999999987598621000013---56---676521066655750-422332343310000123422---------23
Q gi|254780563|r 39 VMLPIIHSFEERTGVKISPIYTSS---IQ---RPPITQGSPVDVIIT-KDETSLALNEDLLHKLPAHLI---------KK 102 (195)
Q Consensus 39 ~~~~~~~~Fek~tgIkV~~~~~~~---~~---~~~~~~~~~~d~~~~-~d~~~l~~~~~~l~~~~~~~~---------~~ 102 (195)
...++.+.|++++||+|++...+. .+ .++... ...|+++. .+......+.|.+.++..-.. ..
T Consensus 56 ~~~~~~~~~e~~~gi~v~~~~~~~~~~~~kl~~~~asg-~~PDi~~~~~~~~~~~~~~G~l~dL~d~~~~~~~~~~~~~~ 134 (535)
T 3omb_A 56 ANMQWAKDLEADCDCKIEWQEVTREAWAQQKNATLASG-DIADVNLNGYGAVEAYQYPGMFEDLSKDLDKLPNVKAFFKQ 134 (535)
T ss_dssp GGCHHHHHHHHHHTSEEEEEEEEHHHHHHHHHHHHHHT-CCCSEEESSCCTHHHHHSTTSBCCGGGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHH
T ss_conf 99999999986649789999789268999999999789-98869998938799999869976422444422103444543
Q ss_pred CCC---CCCCCCCCCCCCC--------CCEEEEEEEHHHHCCC--CCCCCHHHHCC
Q ss_conf 472---0001222223443--------4505888733440134--45578888408
Q gi|254780563|r 103 NSF---VLKNENKKLMRIS--------FDTQVLAYSTKRIKIA--DLPKSVFDLTN 145 (195)
Q Consensus 103 ~~~---~~~~~~~~~~~~~--------~~~~~~~~n~~~~~~~--~~P~sw~DL~~ 145 (195)
.+. .....+|..+++. ....++.||.+.++.. +.|++|+||.+
T Consensus 135 ~~~~~~~~~~~dG~~Y~iP~~~~~~~~~~~~~~~ynkd~l~~~G~~~p~T~de~~~ 190 (535)
T 3omb_A 135 KPDAKKMSTDSKGRIYAIADGRGKAYSGTGQHMLINKAWLDKLGLQVPTTWDELEN 190 (535)
T ss_dssp CHHHHHHHCCTTSCCSSEEEECCGGGCSCSCEEEEEHHHHHHHTCCCCCBHHHHHH
T ss_pred HHHHHHHHCCCCCEEEECCCCCEEEEECCCEEEEEEHHHHHHCCCCCCCCHHHHHH
T ss_conf 47999861055983774235430011035448999837676559889988999999
No 47
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=98.55 E-value=1.8e-07 Score=61.08 Aligned_cols=124 Identities=11% Similarity=0.180 Sum_probs=76.9
Q ss_pred CCCCCEEEECCCC---HHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHH---HHHCCCCCEEEEC-CHHHHHHHHHHHCCC
Q ss_conf 4588089981899---899999999999875-9862100001356676---5210666557504-223323433100001
Q gi|254780563|r 24 NTTKYLTLYTDQN---QSVMLPIIHSFEERT-GVKISPIYTSSIQRPP---ITQGSPVDVIITK-DETSLALNEDLLHKL 95 (195)
Q Consensus 24 ~~~~~lvVYs~~~---~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~---~~~~~~~d~~~~~-d~~~l~~~~~~l~~~ 95 (195)
.++++|+++.+.+ .+.++.++++|++++ ||+|+++..+.....+ ...++..|++... +........|++.++
T Consensus 3 ~e~g~i~~W~~~~~~~~~~~~~~~~~F~~~~p~I~v~~~~~~~~~~~l~~~~~sg~~pDv~~~~~~~~~~~~~~g~l~~l 82 (381)
T 1elj_A 3 IEEGKVVIWHAMQPNELEVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWAHDWIGKFAEAGLLEPI 82 (381)
T ss_dssp CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCBCCC
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCC
T ss_conf 77718999958980389999999999998781989999868999999999997699981999994779999987996558
Q ss_pred CCCC----CCCCCCCCCC---CCCCC--CCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC--HHHC
Q ss_conf 2342----2234720001---22222--3443450588873344013445578888408--6676
Q gi|254780563|r 96 PAHL----IKKNSFVLKN---ENKKL--MRISFDTQVLAYSTKRIKIADLPKSVFDLTN--AQWK 149 (195)
Q Consensus 96 ~~~~----~~~~~~~~~~---~~~~~--~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~--p~~k 149 (195)
..-. .+...+...+ .+|.. +|+.....++.||++.+. ++|+||+||.+ .+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~dG~~y~~P~~~~~~~l~ynkdl~~--~~p~T~~e~~~~~~~~~ 145 (381)
T 1elj_A 83 DEYVTEDLLNEFAPMAQDAMQYKGHYYALPFAAETVAIIYNKEMVS--EPPKTFDEMKAIMEKYY 145 (381)
T ss_dssp TTTCCHHHHTTBCHHHHHHTEETTEECEEEEEEEECEEEEETTTCS--SCCSSHHHHHHHHHHHC
T ss_pred CHHHCHHHHHHCCHHHHHHEEECCEEEEECCCCCCCHHHCCCHHHH--CHHHHHHHHHHHHHHHH
T ss_conf 5211345676514998964189999984043334401220520110--11345678999999975
No 48
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=98.51 E-value=6.1e-07 Score=58.08 Aligned_cols=153 Identities=8% Similarity=0.120 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCH--HH---HH---HHHHHHCCCCCEEEE-CCHHHHHHHHHHHCCCCC---CCCCCCC
Q ss_conf 99999999999875-986210000--13---56---676521066655750-422332343310000123---4222347
Q gi|254780563|r 38 SVMLPIIHSFEERT-GVKISPIYT--SS---IQ---RPPITQGSPVDVIIT-KDETSLALNEDLLHKLPA---HLIKKNS 104 (195)
Q Consensus 38 ~~~~~~~~~Fek~t-gIkV~~~~~--~~---~~---~~~~~~~~~~d~~~~-~d~~~l~~~~~~l~~~~~---~~~~~~~ 104 (195)
..++.++++|+|++ ||+|++... +. .+ ..+... +..|++.. .+........|.+.++.. .......
T Consensus 31 ~~~~~~i~~F~k~~p~i~V~~~~~~~~~~d~~~kl~~~~~ag-~~pDi~~~~~~~~~~~~~~g~l~dL~~~~~~~~~~~~ 109 (412)
T 2z8f_A 31 TLVNDIVAKWNKQHPDIQVKATKFDGKASDMIKKLETDVKSG-EAPDLAQVGYAELPEVFTKGLLQDVTQYAEQYKNDFA 109 (412)
T ss_dssp CCHHHHHHHHHHHCTTEEEEEEECSSCGGGHHHHHHHHHHHT-CCCSEEEEEGGGHHHHHHTTCBCCCHHHHHHHGGGBC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCC-CCCEEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHCC
T ss_conf 999999999998883928999982797789999999998679-9886999891889999987995538154666576457
Q ss_pred CCCC-----CCCCCCCCCCCCEEEEEEEHHHHCCC---CCCCCHHHHCCH--HH--CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 2000-----12222234434505888733440134---455788884086--67--685996289830499999999960
Q gi|254780563|r 105 FVLK-----NENKKLMRISFDTQVLAYSTKRIKIA---DLPKSVFDLTNA--QW--KKRLSIAPNNISFHRLLNTMEQTP 172 (195)
Q Consensus 105 ~~~~-----~~~~~~~~~~~~~~~~~~n~~~~~~~---~~P~sw~DL~~p--~~--kG~i~~~~~~~s~~~~~~a~~~~~ 172 (195)
+... +..-+.+|......++.||++.+... ++|++|+||.+- +. +|+..++-.......++..+....
T Consensus 110 ~~~~~~~~~dGk~y~iP~~~~~~~~~ynkd~~~~~G~~~~P~Twde~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 189 (412)
T 2z8f_A 110 SGPYSLVQVGGKAYGLPQDTGPLVYFYNKAEFEKLGITEIPQTADEFIAAAKTAAAAGKYIMSYQPDEAGNMISGLAGAS 189 (412)
T ss_dssp HHHHHTTEETTEECEEECBCCBEEEEEEHHHHHHTTCCSCCCBHHHHHHHHHHHHHTTCBSCBCCGGGTTTHHHHHHHTT
T ss_pred HHHHHHEEECCEEEEEEEECCCCEEEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCC
T ss_conf 99897508999999999743760699971137765887898739999999999985496267625776655201344314
Q ss_pred C------------------HHHHHHHHHHHHHCCCCC
Q ss_conf 8------------------699999999986088705
Q gi|254780563|r 173 N------------------KTVVQDFIKNITANEILT 191 (195)
Q Consensus 173 G------------------~~~~~~~l~~l~~N~~~~ 191 (195)
| ..++.+|++.|...+...
T Consensus 190 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (412)
T 2z8f_A 190 GGWYKVKGDSWVVNTETDGSKATADFYQQLLDAKAAT 226 (412)
T ss_dssp CCSEEEETTEEEECCCCHHHHHHHHHHHHHHHTTCSB
T ss_pred CCEEECCCCCEEECCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 6334226872123259999999999999999749988
No 49
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=98.28 E-value=1.6e-06 Score=55.60 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=72.6
Q ss_pred CCCCEEEECCCCHH---HHHHHHHHHHHHC-CCCCCCCCHH--HHH----HH--HHHHCCCCCEEEECC-HHHHHHHHHH
Q ss_conf 58808998189989---9999999999875-9862100001--356----67--652106665575042-2332343310
Q gi|254780563|r 25 TTKYLTLYTDQNQS---VMLPIIHSFEERT-GVKISPIYTS--SIQ----RP--PITQGSPVDVIITKD-ETSLALNEDL 91 (195)
Q Consensus 25 ~~~~lvVYs~~~~~---~~~~~~~~Fek~t-gIkV~~~~~~--~~~----~~--~~~~~~~~d~~~~~d-~~~l~~~~~~ 91 (195)
.+.+||+..+...+ ..+.++++|++++ ||+|+++... ..+ .+ ....+...|++.... ........|.
T Consensus 2 e~g~i~~~~~g~~~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~~~~~~~~~a~~~~PDi~~~~~~~~~~~~~~g~ 81 (409)
T 1eu8_A 2 EEGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASGW 81 (409)
T ss_dssp CSSEEEEEECCSHHHHHHHHHHHHHHHHHSTTCEEEEEECCSSHHHHHHHHHHHHTTTCSSEEEEEEETTTHHHHHHHTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCC
T ss_conf 74279999799875999999999999988869089999836945999999999998289998799989488999998899
Q ss_pred HCCCCCCC------CCC-CCC---CCCCCCCC--CCCCCCCEEEEEEEHHHHCCCC---CCCCHHHHCC
Q ss_conf 00012342------223-472---00012222--2344345058887334401344---5578888408
Q gi|254780563|r 92 LHKLPAHL------IKK-NSF---VLKNENKK--LMRISFDTQVLAYSTKRIKIAD---LPKSVFDLTN 145 (195)
Q Consensus 92 l~~~~~~~------~~~-~~~---~~~~~~~~--~~~~~~~~~~~~~n~~~~~~~~---~P~sw~DL~~ 145 (195)
+.++..-. ... .+. .....+|. .+|+.....++.||++.++... +|++|+||.+
T Consensus 82 l~dL~~~~~~~~~~~~~~~~~~~~~~~~~~G~~y~vP~~~~~~~l~yNkdl~~~~G~~~pp~T~de~~~ 150 (409)
T 1eu8_A 82 LEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVE 150 (409)
T ss_dssp BCCSHHHHHHHTCCGGGBCHHHHHHHTEETTEECCEEEEEEECEEEEEHHHHHHTTCCSCCSBHHHHHH
T ss_pred EEECHHHHHHCCCCHHHHCHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCHHHCCCCCCCCCHHHHHH
T ss_conf 565827664355466553699998623409989998636662699996242221378899987899999
No 50
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=98.25 E-value=3.6e-06 Score=53.64 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=73.4
Q ss_pred CCEEEECCCCH--------HHHHHHHHHHHHHC-CCCCCCCCHH---HH-HHHH-H-HHCCCCCEEEECCH--HHHHHHH
Q ss_conf 80899818998--------99999999999875-9862100001---35-6676-5-21066655750422--3323433
Q gi|254780563|r 27 KYLTLYTDQNQ--------SVMLPIIHSFEERT-GVKISPIYTS---SI-QRPP-I-TQGSPVDVIITKDE--TSLALNE 89 (195)
Q Consensus 27 ~~lvVYs~~~~--------~~~~~~~~~Fek~t-gIkV~~~~~~---~~-~~~~-~-~~~~~~d~~~~~d~--~~l~~~~ 89 (195)
.+|+++.+... ...+.++++|++++ ||+|+++... .. +.+. . ..+...|++..... .......
T Consensus 38 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~l~~~~~ag~~PDi~~~~~~~~~~~~~~~ 117 (430)
T 2w7y_A 38 EVLEFYHGYHHSEDEWPVAKTMRDLYDKFAEEHKDSGVEFKPTPVNGDLKDIMNNKVASGEFPDVIDLAGNAVSLAAIEQ 117 (430)
T ss_dssp CEEEEEESCCCCTTTCHHHHHHHHHHHHHHHHC--CCSEEEEEECSSCHHHHHHHHHTTTCCCSEEECTTCCCCHHHHHT
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHC
T ss_conf 56999973577665307999999999999998859379999816826899999999967998859998885899999978
Q ss_pred HHHCCCCCCC-----CCCCCCCCC--CCCC--CCCCCCCCEEEEEEEHHHHCCC-----CCCCCHHHHCC--HHH---CC
Q ss_conf 1000012342-----223472000--1222--2234434505888733440134-----45578888408--667---68
Q gi|254780563|r 90 DLLHKLPAHL-----IKKNSFVLK--NENK--KLMRISFDTQVLAYSTKRIKIA-----DLPKSVFDLTN--AQW---KK 150 (195)
Q Consensus 90 ~~l~~~~~~~-----~~~~~~~~~--~~~~--~~~~~~~~~~~~~~n~~~~~~~-----~~P~sw~DL~~--p~~---kG 150 (195)
|++.++..-. ....+..+. ..+| +.+|+.....++.||++.++.. ..|++|+||.+ .+. .|
T Consensus 118 g~l~dL~~~~~~~~~~~~~~~~~~~~~~dGk~yglP~~~~~~~l~ynkdl~~~~G~~~p~~~~Twde~~~~~~~~~~~~g 197 (430)
T 2w7y_A 118 KLVLDLKPYIDSNKLEKNVGLNYKQNQKDGKIYTVHEQLFTMGLWYNKDIFAKAGAKTPDQWNTWDDFTQAMASIRKQDG 197 (430)
T ss_dssp TCBCCCHHHHHHTTCHHHHTTHHHHTEETTEECCBCSBCEEECEEEEHHHHHHHTCCCGGGCCSHHHHHHHHHHHHTSSS
T ss_pred CCEEECCHHHHHCCHHHHCHHHHHHCCCCCEEECCCEECCCEEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 98421836550200333058889726479868615635353699997367665389887654048999999998764369
Q ss_pred EEEECCCCC
Q ss_conf 599628983
Q gi|254780563|r 151 RLSIAPNNI 159 (195)
Q Consensus 151 ~i~~~~~~~ 159 (195)
...+.....
T Consensus 198 ~~~~~~~~~ 206 (430)
T 2w7y_A 198 VYAFGAGEP 206 (430)
T ss_dssp CEEECCBTT
T ss_pred CEECCCCCC
T ss_conf 452046776
No 51
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=98.10 E-value=3.2e-06 Score=53.97 Aligned_cols=117 Identities=12% Similarity=0.166 Sum_probs=68.0
Q ss_pred CEEEECCC---CHHHHHHHHHHHHHHC-CCCCCCCCH--HH----HHH---HHHHHCCCCCEEEE-CCHH--HHHHHHHH
Q ss_conf 08998189---9899999999999875-986210000--13----566---76521066655750-4223--32343310
Q gi|254780563|r 28 YLTLYTDQ---NQSVMLPIIHSFEERT-GVKISPIYT--SS----IQR---PPITQGSPVDVIIT-KDET--SLALNEDL 91 (195)
Q Consensus 28 ~lvVYs~~---~~~~~~~~~~~Fek~t-gIkV~~~~~--~~----~~~---~~~~~~~~~d~~~~-~d~~--~l~~~~~~ 91 (195)
+|.||++. .....+.++++|++++ ||+|++... +. .+. ++.. ++..|++.. .+.. ......|.
T Consensus 2 ~i~v~~ww~g~e~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~~~l~~~~~a-g~~PDv~~~~~~~~~~~~~~~~g~ 80 (400)
T 2b3f_A 2 KLEIFSWWAGDEGPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLKTRMLG-GDPPDTFQVHAGMELIGTWVVANR 80 (400)
T ss_dssp EEEEEESCCGGGCHHHHHHHHHHHHHCTTCEEEEEECCCGGGHHHHHHHHHHHHT-TCCCSEEEEETTHHHHHTTTTTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHC-CCCCEEEEECCCHHHHHHHHHCCC
T ss_conf 8999996148659999999999998888938999980798769999999999977-997869998786799999998798
Q ss_pred HCCCCCCC-----CCCCCCCC---CCCCCCCCCCCC--C-EEEEEEEHHHHCCC--CCCCCHHHHCC
Q ss_conf 00012342-----22347200---012222234434--5-05888733440134--45578888408
Q gi|254780563|r 92 LHKLPAHL-----IKKNSFVL---KNENKKLMRISF--D-TQVLAYSTKRIKIA--DLPKSVFDLTN 145 (195)
Q Consensus 92 l~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~--~-~~~~~~n~~~~~~~--~~P~sw~DL~~ 145 (195)
+.++..-. .+..++.. ...+|..+++.. . ..++.||++.++.. ++|++|+||.+
T Consensus 81 l~~L~~~~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~~~~ynk~l~~~~g~~~p~Twdel~~ 147 (400)
T 2b3f_A 81 MEDLSALFRQEGWLQAFPKGLIDLISYKGGIWSVPVNIHRSNVMWYLPAKLKGWGVNPPRTWDKFLA 147 (400)
T ss_dssp BCCCHHHHHHHTHHHHSCHHHHHHHEETTEECCEECCBEESCEEEECHHHHHHTTCCCCSSHHHHHH
T ss_pred EEECHHHHHHCCHHHHCHHHHHHHCEECCEEEEEEECCCCEEEEEECHHHHHHCCCCCCCCCHHHHH
T ss_conf 4407286642033433639999752789889999850676158997207687658788886078999
No 52
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural genomics, protein structure initiative; 1.97A {Coccidioides immitis RS}
Probab=98.06 E-value=3.7e-06 Score=53.59 Aligned_cols=138 Identities=9% Similarity=0.049 Sum_probs=71.5
Q ss_pred HHCCCCCCCCEEEECCCC--HHHHHHHHHHHHHHC------CCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHH-H
Q ss_conf 612444588089981899--899999999999875------9862100001356676521066655750422332343-3
Q gi|254780563|r 19 AFSTENTTKYLTLYTDQN--QSVMLPIIHSFEERT------GVKISPIYTSSIQRPPITQGSPVDVIITKDETSLALN-E 89 (195)
Q Consensus 19 ~~~~~~~~~~lvVYs~~~--~~~~~~~~~~Fek~t------gIkV~~~~~~~~~~~~~~~~~~~d~~~~~d~~~l~~~-~ 89 (195)
++++.+..-+|+|+++.+ ..+++.+.++|+|++ ||+|++..+++.+.+...++..+|+.++.+....... +
T Consensus 12 g~~~~~~~~~l~i~~gs~~~~~l~~~la~aF~k~~~~~~~tgi~V~~~~~GSg~~i~~l~~G~~Di~~ss~~~~~~~~~~ 91 (294)
T 3cvg_A 12 GYGSKHSPVQLRIGNGGAGQSGLVKELADAFIKSKVDSGSAPFKVAWYKSDTTVTINYLKDGIVDVGITYSPVAERISIK 91 (294)
T ss_dssp -------CEEEEEEESHHHHHTHHHHHHHHHHHHHHSCC---CEEEEEECCHHHHHHHHHTTSCSEEEESCHHHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCEEEECCCHHHHHHHH
T ss_conf 33478887799993477326889999999999755323689838999968829999998658984686317023689997
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHH
Q ss_conf 10000123422234720001222223443450588873344013445578888408667685996289830499
Q gi|254780563|r 90 DLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHR 163 (195)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~ 163 (195)
..+...+.. ...+.....+.....+..+............++.|+++..|..+-.+..++.++..+.
T Consensus 92 ~~~~~~~~~-------~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~w~~~g~~~~~i~~~~r~~~sgt~~ 158 (294)
T 3cvg_A 92 HGISESPSY-------YAFRDHFMLIGPPSNPAKLSGDSDIADMFSKMHDAAEAGNTKPPVRFLSRYDKSATNI 158 (294)
T ss_dssp TTSBCSSCE-------EEEEEEEEEEECTTCTTCCCTTSCHHHHHHHHHHHHHHCCSSSCCCEEECCSSSHHHH
T ss_pred CCCCCCCEE-------ECCCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHH
T ss_conf 387865236-------3256729998898865432332456677655323343147655613553566663468
No 53
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A
Probab=98.04 E-value=1.6e-05 Score=49.97 Aligned_cols=112 Identities=16% Similarity=0.190 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHC-CCCCCCCCHH--H-HH---HHHHHHCCCCCEEEECC-HHHHHHHHHH-HCCCC---CC-CCCCC
Q ss_conf 899999999999875-9862100001--3-56---67652106665575042-2332343310-00012---34-22234
Q gi|254780563|r 37 QSVMLPIIHSFEERT-GVKISPIYTS--S-IQ---RPPITQGSPVDVIITKD-ETSLALNEDL-LHKLP---AH-LIKKN 103 (195)
Q Consensus 37 ~~~~~~~~~~Fek~t-gIkV~~~~~~--~-~~---~~~~~~~~~~d~~~~~d-~~~l~~~~~~-l~~~~---~~-~~~~~ 103 (195)
.+..+.++++|++++ ||+|++...+ . .+ ..+.. ++..|++.... ........+. +..+. .. .....
T Consensus 19 ~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~kl~~~~~s-g~~PDv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 97 (408)
T 2uvj_A 19 HQVTLKALEEFHKQHPNINVKAEYTGWDGHLSRLTTQIAG-GTEPDVMQTNWNWLPIFSKDGTGFYNLFSVKEQLDLAQF 97 (408)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEECSTTHHHHHHHHHHH-TCCCSEEEECGGGHHHHCTTSCSBCCGGGGTTTSCGGGS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHC-CCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHCCHHHC
T ss_conf 9999999999999883938999978837999999999977-998759999947899999809866784444310266445
Q ss_pred CCCCC---CCCC--CCCCCCCCEEEEEEEHHHHCCC--CCCCCHHHHCC--HHHC
Q ss_conf 72000---1222--2234434505888733440134--45578888408--6676
Q gi|254780563|r 104 SFVLK---NENK--KLMRISFDTQVLAYSTKRIKIA--DLPKSVFDLTN--AQWK 149 (195)
Q Consensus 104 ~~~~~---~~~~--~~~~~~~~~~~~~~n~~~~~~~--~~P~sw~DL~~--p~~k 149 (195)
.+... ..+| +.+|+.....++.||++.+... ++|+||+||.+ .+++
T Consensus 98 ~~~~~~~~~~dG~~y~vP~~~~~~~l~ynkdl~~~aG~~~P~Twde~~~~~~~~~ 152 (408)
T 2uvj_A 98 DPKELQQTTVNGKLNGIPISVTARIFYFNDATWAKAGLEYPKTWDELLAAGKVFK 152 (408)
T ss_dssp CHHHHHTTEETTEECCEEEEEEEEEEEEEHHHHHHHTCCCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHCEECCEEEEEEECCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9998962478988999862154069999502556632774346789999999998
No 54
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=97.91 E-value=4.5e-06 Score=53.13 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=47.6
Q ss_pred CCCCEEEECCCC-HHHHHHHHHHHHHHC-CCCCCCCCHHHHHHH--HHHHCCCCCEEEECCHHHHH--HHHHHHCCCC
Q ss_conf 588089981899-899999999999875-986210000135667--65210666557504223323--4331000012
Q gi|254780563|r 25 TTKYLTLYTDQN-QSVMLPIIHSFEERT-GVKISPIYTSSIQRP--PITQGSPVDVIITKDETSLA--LNEDLLHKLP 96 (195)
Q Consensus 25 ~~~~lvVYs~~~-~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~--~~~~~~~~d~~~~~d~~~l~--~~~~~l~~~~ 96 (195)
..++|+||++.+ ....++++++||+++ ||+|++...+..+.+ +...+.+.|+++..+...+. .+.+++.++.
T Consensus 41 ~~~~Ltv~~~gs~~~~~~~l~~~Fek~~P~IkV~~~~~~~~~~~~~~~~~g~~pDV~~~~~~~~~~~~~~~~~~~~~~ 118 (354)
T 3k6v_A 41 EGEVLTVFHAGSLSVPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYA 118 (354)
T ss_dssp --CEEEEEEEGGGHHHHHHHHHHHHHHSTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCC
T ss_conf 897699998067389999999999998849289999688199999999679998789988889999998657756430
No 55
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=97.91 E-value=3.1e-06 Score=54.04 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=42.4
Q ss_pred CCCCEEEECCCC-HHHHHHHHHHHHHHC-CCCCCCCCHHHHHH--HHHHHCCCCCEEEECCHHHH
Q ss_conf 588089981899-899999999999875-98621000013566--76521066655750422332
Q gi|254780563|r 25 TTKYLTLYTDQN-QSVMLPIIHSFEERT-GVKISPIYTSSIQR--PPITQGSPVDVIITKDETSL 85 (195)
Q Consensus 25 ~~~~lvVYs~~~-~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~--~~~~~~~~~d~~~~~d~~~l 85 (195)
..++|+||++.+ ....++++++||+++ ||+|++...+..+. .+...+.+.|+++.......
T Consensus 3 ~ge~ltv~~~gs~~~~~~~l~~~Fe~~~P~i~V~~~~~~~~~~~~~~~a~g~~pDv~~~~~~~~~ 67 (296)
T 3cfx_A 3 MGEVLTVFHAGSLSVPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADYALI 67 (296)
T ss_dssp -CCEEEEEECGGGHHHHHHHHHHHHHHSTTCEEEEEECCHHHHHHHHHTSCCCCSEEEESSTTHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEECCHHHH
T ss_conf 88879999756719999999999998883938999968819999999967999999998635666
No 56
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=97.82 E-value=2.1e-05 Score=49.24 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=66.5
Q ss_pred CEEE--ECC--CCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEECC-HHHHHHHHHHHCCCCCCCC-
Q ss_conf 0899--818--99899999999999875-986210000135667652106665575042-2332343310000123422-
Q gi|254780563|r 28 YLTL--YTD--QNQSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVIITKD-ETSLALNEDLLHKLPAHLI- 100 (195)
Q Consensus 28 ~lvV--Ys~--~~~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~~~d-~~~l~~~~~~l~~~~~~~~- 100 (195)
+|+| |.+ ......+.++++|||++ ||+|+++..+.... ..+...|++.... ........|++.++.....
T Consensus 2 Tl~v~~~~~~~~~~~~~~~~~~~Fe~~~P~i~Ve~~~~~~~~~---~~~~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~~ 78 (371)
T 3thi_A 2 TLKVAIYPYVPDPARFQAAVLDQWQRQEPGVKLEFTDWDSYSA---DPPDDLDVFVLDSIFLSHFVDAGYLLPFGSQDID 78 (371)
T ss_dssp EEEEECCSCSSCHHHHHHHHHHHHHHHCTTSEEEECCCCTTTC---CCCTTCCEEEEEGGGHHHHHHTTCEECBCGGGCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH---CCCCCCEEEEECHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 8999962788867999999999999888095899981678655---4899688999996889999988991318742023
Q ss_pred --CCCCCCCC---CCCC--CCCCCCCCEEEEEEEHHHHCCCC--CCCCHHHHC
Q ss_conf --23472000---1222--22344345058887334401344--557888840
Q gi|254780563|r 101 --KKNSFVLK---NENK--KLMRISFDTQVLAYSTKRIKIAD--LPKSVFDLT 144 (195)
Q Consensus 101 --~~~~~~~~---~~~~--~~~~~~~~~~~~~~n~~~~~~~~--~P~sw~DL~ 144 (195)
....+... ..+| +.+|+.....++.||++.++... .|.+|+|..
T Consensus 79 ~~~~~~~~~~~~~~~~G~~y~vP~~~~~~~l~Ynkd~~~~aG~~~~~~~~~~~ 131 (371)
T 3thi_A 79 QAEDVLPFALQGAKRNGEVYGLPQILCTNLLFYRKGDLKIGQVDNIYELYKKI 131 (371)
T ss_dssp TGGGBCHHHHHHTEETTEECCEEEEEECEEEEEETTCHHHHTCCBHHHHHHHH
T ss_pred HHHHCCHHHHHHCEECCEEEEEEEECCCEEEEEEHHHHHHCCCCCCCCHHHHH
T ss_conf 05441699897448898899988751207999877888763899996306899
No 57
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=97.50 E-value=0.00014 Score=44.52 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=51.4
Q ss_pred CCCEEEECCCC-HHHHHHHHHHHHHHC-CCCCCCCCHHHHHH--HHHHHCCCCCEEEECCHHHH--HHHHHHHCCCCCCC
Q ss_conf 88089981899-899999999999875-98621000013566--76521066655750422332--34331000012342
Q gi|254780563|r 26 TKYLTLYTDQN-QSVMLPIIHSFEERT-GVKISPIYTSSIQR--PPITQGSPVDVIITKDETSL--ALNEDLLHKLPAHL 99 (195)
Q Consensus 26 ~~~lvVYs~~~-~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~--~~~~~~~~~d~~~~~d~~~l--~~~~~~l~~~~~~~ 99 (195)
.-+|+||.+.+ ....++++++||+++ ||+|++...+..+. .+...+++.|+++..+...+ ..+.+.+.++....
T Consensus 4 kvtl~v~~ags~~~~~~~~~~~Fe~~~P~I~V~~~~~~~~~~~~kl~a~g~~pDv~~~~~~~~~~~~~~~g~~~~~~~~~ 83 (292)
T 3cfz_A 4 KIVLKIFHAGSLSVPFEEYEKMFEKEHPNVDVEREPAGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFA 83 (292)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCCHHH
T ss_conf 64999997758689999999999988859089999788599999999679998799999889999999668867652021
Q ss_pred CCC
Q ss_conf 223
Q gi|254780563|r 100 IKK 102 (195)
Q Consensus 100 ~~~ 102 (195)
...
T Consensus 84 ~~~ 86 (292)
T 3cfz_A 84 RNE 86 (292)
T ss_dssp ECC
T ss_pred HCC
T ss_conf 034
No 58
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=97.33 E-value=0.00037 Score=42.20 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=48.1
Q ss_pred CCCEEEECCCC-HHHHHHHHHHHHHHC-CCCCCCCCHHHHHHH--HHHHCCCCCEEEECCHHHH--HHHHHHHCCCCC
Q ss_conf 88089981899-899999999999875-986210000135667--6521066655750422332--343310000123
Q gi|254780563|r 26 TKYLTLYTDQN-QSVMLPIIHSFEERT-GVKISPIYTSSIQRP--PITQGSPVDVIITKDETSL--ALNEDLLHKLPA 97 (195)
Q Consensus 26 ~~~lvVYs~~~-~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~--~~~~~~~~d~~~~~d~~~l--~~~~~~l~~~~~ 97 (195)
.-+|+||.+.+ .+..++++++||+++ ||+|++...+..+.+ +...+++.|++...+...+ ..+.+++.++.+
T Consensus 4 ~v~Ltv~~ags~~~~~~~~~~~Fe~~~P~I~V~~~~~~~~~~~~~~~a~g~~pDv~~~~~~~~~~~~~~~g~~~~~~~ 81 (295)
T 3cij_A 4 NVKLKVFHAGSLTEPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIM 81 (295)
T ss_dssp -CEEEEEEEGGGHHHHHHHHHHHHHHCTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCCH
T ss_conf 608999982685999999999999888490899996880999999996799998899887789999996699776620
No 59
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=97.28 E-value=0.00018 Score=43.98 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=48.8
Q ss_pred CCCCEEEECCCC-HHHHHHHHHHHHHHC----CCCCCCCCHHH--HHH--HHHHHCCCCCEEEECCHHHH--HHHHHHHC
Q ss_conf 588089981899-899999999999875----98621000013--566--76521066655750422332--34331000
Q gi|254780563|r 25 TTKYLTLYTDQN-QSVMLPIIHSFEERT----GVKISPIYTSS--IQR--PPITQGSPVDVIITKDETSL--ALNEDLLH 93 (195)
Q Consensus 25 ~~~~lvVYs~~~-~~~~~~~~~~Fek~t----gIkV~~~~~~~--~~~--~~~~~~~~~d~~~~~d~~~l--~~~~~~l~ 93 (195)
.+-+|+||++.+ ....++++++||+++ ||+|++..... .+. .....+.+.|+++..+...+ ..+.|++.
T Consensus 3 ~evtl~v~~~gs~~~~~~~l~~~Fe~~~P~~tgi~V~~~~~~~~~~~~~~~~~~~g~~~Dv~~~~~~~~~~~~~~~g~l~ 82 (296)
T 3cg1_A 3 MEVTLIVFHAGSLSVPFQEVEKEFSEYAERNLGIKVSFQDEASGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTD 82 (296)
T ss_dssp -CEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCC
T ss_conf 75189999764748999999999998678778669999957998999999999569999889977889999999779978
Q ss_pred CCCCC
Q ss_conf 01234
Q gi|254780563|r 94 KLPAH 98 (195)
Q Consensus 94 ~~~~~ 98 (195)
++.+-
T Consensus 83 ~~~~~ 87 (296)
T 3cg1_A 83 FYVLF 87 (296)
T ss_dssp CCEEE
T ss_pred CCCCC
T ss_conf 77310
No 60
>1j1n_A ALGQ2; alginate, suger binding protein; HET: BEM MAV LGU; 1.60A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 1kwh_A 1y3n_A* 1y3p_A* 1y3q_A
Probab=97.11 E-value=0.0004 Score=41.96 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCCCEEEECCCCHH----HHHHHHHHHHHHCCCCCCCCCHH---H-HHHH--HHHHCCCCCEEEECCH-HH--HHHHHHH
Q ss_conf 58808998189989----99999999998759862100001---3-5667--6521066655750422-33--2343310
Q gi|254780563|r 25 TTKYLTLYTDQNQS----VMLPIIHSFEERTGVKISPIYTS---S-IQRP--PITQGSPVDVIITKDE-TS--LALNEDL 91 (195)
Q Consensus 25 ~~~~lvVYs~~~~~----~~~~~~~~Fek~tgIkV~~~~~~---~-~~~~--~~~~~~~~d~~~~~d~-~~--l~~~~~~ 91 (195)
..-+|+||-+.... ...++.+.+++++||+|+++... . .+.+ ...-++..|+++..+. .. .....|.
T Consensus 9 ~pvtl~~~~~~~~~~~~~~~~~~~k~~~~~~~iki~~~~~~~~~d~~~kl~~~lasg~~PDii~~~~~~~~~~~~~~~G~ 88 (492)
T 1j1n_A 9 KPLTLKIHMHFRDKWVWDENWPVAKESFRLTNVKLQSVANKAATNSQEQFNLMMASGDLPDVVGGDNLKDKFIQYGQEGA 88 (492)
T ss_dssp SCEEEEEEEEETTTEECCTTSHHHHHHHHHHSEEEEECSCTTCCCHHHHHHHHHTSSCCCSEEEESSCHHHHHHHHHTTS
T ss_pred CCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCC
T ss_conf 98799999706865554326299999736669789999668977899999999978897869998984799999998899
Q ss_pred HCCCCCCC----------CCCCCC---CCCCCCCCCCCCCC-----CEEEEEEEHHHHCCC--CCCCCHHHHCC
Q ss_conf 00012342----------223472---00012222234434-----505888733440134--45578888408
Q gi|254780563|r 92 LHKLPAHL----------IKKNSF---VLKNENKKLMRISF-----DTQVLAYSTKRIKIA--DLPKSVFDLTN 145 (195)
Q Consensus 92 l~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~n~~~~~~~--~~P~sw~DL~~ 145 (195)
+.++..-. ....+. .....+|..+++.. ...++.||.+.++.. ++|++|+|+.+
T Consensus 89 l~dL~d~~~~~~p~~~~~~~~~~~~~~~~~~~dGk~Y~iP~~~~~~~~~~~~ynkd~~~~~G~~~p~t~de~~~ 162 (492)
T 1j1n_A 89 FVPLNKLIDQYAPHIKAFFKSHPEVERAIKAPDGNIYFIPYVPDGVVARGYFIREDWLKKLNLKPPQNIDELYT 162 (492)
T ss_dssp BCCCHHHHHHHCHHHHHHHHHCHHHHHHHCCTTSCCCCEEEECCCSCCEEEEEEHHHHHHTTCCCCCBHHHHHH
T ss_pred EEECHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHCCCCCCCCHHHHHH
T ss_conf 89887999761700688877668999960068981785154357774027998756898749988863788999
No 61
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=96.56 E-value=0.013 Score=33.42 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCC----------CCEEEE-C----CC---------CHHHHHHHHHHHHHHC---CC
Q ss_conf 90259999999999999861244458----------808998-1----89---------9899999999999875---98
Q gi|254780563|r 1 MFKRTIYTYLLLLCGFTEAFSTENTT----------KYLTLY-T----DQ---------NQSVMLPIIHSFEERT---GV 53 (195)
Q Consensus 1 mmkk~~~~~l~l~~~~~~~~~~~~~~----------~~lvVY-s----~~---------~~~~~~~~~~~Fek~t---gI 53 (195)
||||.++..+++++++++++++...+ ++|+|- . +. .....-.+.+++.++. ++
T Consensus 2 ~~~k~l~~~~~~~l~~~~~~~~~~~a~~~l~~i~~~~~l~V~~~~~~pP~~~~d~~~g~~~G~~~di~~~ia~~~~~~~~ 81 (259)
T 2v25_A 2 VFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDK 81 (259)
T ss_dssp ---------------------------CHHHHHHHHTCEEEEECSEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEEECCCCCCCEEEECCCCEEEEEEEHHHHHHHHHHCCCCC
T ss_conf 63799999999999999872331113265999960998999982897883246678984888986476568887278875
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 621000013566765210666557504
Q gi|254780563|r 54 KISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 54 kV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
+|+++................|+.+..
T Consensus 82 ~v~~~~~~~~~~~~~l~~g~~d~~~~~ 108 (259)
T 2v25_A 82 KIKLVAVNAKTRGPLLDNGSVDAVIAT 108 (259)
T ss_dssp SEEEEECCTTTHHHHHHTTSCSEECSS
T ss_pred EEEEEEEEHHHHHHHHHCCCCCCCCCC
T ss_conf 799998337758999976996600333
No 62
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=96.10 E-value=0.062 Score=29.51 Aligned_cols=148 Identities=10% Similarity=0.110 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC---C-HHHHHHHHHHHHHH-CCCCCCCCC-HHHHHHHHHHHCCCCC
Q ss_conf 0259999999999999861244458808998189---9-89999999999987-598621000-0135667652106665
Q gi|254780563|r 2 FKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQ---N-QSVMLPIIHSFEER-TGVKISPIY-TSSIQRPPITQGSPVD 75 (195)
Q Consensus 2 mkk~~~~~l~l~~~~~~~~~~~~~~~~lvVYs~~---~-~~~~~~~~~~Fek~-tgIkV~~~~-~~~~~~~~~~~~~~~d 75 (195)
|||.|+..|.+ ++++.+++.|+|-|+. . +.....+.+.+.++ .||+++.+. +++.+.+....+..+|
T Consensus 1 m~~~ila~l~~-------a~~a~A~~~l~i~tg~~gg~~~~~g~~ia~~~~~~~~gi~~~~~~t~Gs~~N~~~l~~g~~d 73 (314)
T 1us5_A 1 MRKPILAALTL-------AGLGLAQEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFE 73 (314)
T ss_dssp -----------------------CCEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCS
T ss_pred CCHHHHHHHHH-------HCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf 93899999997-------24342331489997999971499999999999735898489998078889999999769971
Q ss_pred EEEEC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCE-EE
Q ss_conf 57504-22332343310000123422234720001222223443450588873344013445578888408667685-99
Q gi|254780563|r 76 VIITK-DETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKR-LS 153 (195)
Q Consensus 76 ~~~~~-d~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~-i~ 153 (195)
.-+.. +........+-..+.+.....+ ++.- ......+.-+++-. +.-.+++.|| +|| +.
T Consensus 74 ~a~~~~~~~~~~~~~~g~~~~~~~~~~~----lr~v----~~~~~~~~~~~v~~-----ds~I~s~~DL-----~Gkrv~ 135 (314)
T 1us5_A 74 MALAQNDIAYYAYQGCCIPAFEGKPVKT----IRAL----AALYPEVVHVVARK-----DAGIRTVADL-----KGKRVV 135 (314)
T ss_dssp EEEEEHHHHHHHHHTCSSTTTTTCCCTT----EEEE----EEEEEEEEEEEEET-----TSSCSSGGGG-----TTSEEE
T ss_pred EEEECHHHHHHHHHCCCCCCCCCCCCCC----EEEE----EEECHHHHEEEECC-----CCCCCCHHHH-----CCCEEE
T ss_conf 9997508999998466875334575404----0278----87051133133037-----7776778880-----887751
Q ss_pred ECCCCCCHHHHHHHHHHHHCH
Q ss_conf 628983049999999996086
Q gi|254780563|r 154 IAPNNISFHRLLNTMEQTPNK 174 (195)
Q Consensus 154 ~~~~~~s~~~~~~a~~~~~G~ 174 (195)
+-+.++........++...|.
T Consensus 136 ~g~~gs~~~~~~~~~l~~~g~ 156 (314)
T 1us5_A 136 VGDVGSGTEQNARQILEAYGL 156 (314)
T ss_dssp CCCTTCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHCC
T ss_conf 368885136689999998099
No 63
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=93.91 E-value=0.19 Score=26.69 Aligned_cols=125 Identities=8% Similarity=-0.054 Sum_probs=62.5
Q ss_pred CCCCCCCEEEEC--CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCC-CCC
Q ss_conf 444588089981--89989999999999987598621000013566765210666557504223323433100001-234
Q gi|254780563|r 22 TENTTKYLTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSLALNEDLLHKL-PAH 98 (195)
Q Consensus 22 ~~~~~~~lvVYs--~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~d~~~l~~~~~~l~~~-~~~ 98 (195)
..++.++|+|=+ +.+......++...=++.|++|++..+++.......++...|+++..-.+... ..+.++ ...
T Consensus 2 ~p~~~~~V~ig~~~w~~~~~~a~i~~~vLe~~Gy~Ve~~~~~~~~~~~al~~GdID~~~e~W~p~~~---~~~~~~~~~~ 78 (298)
T 2rin_A 2 EPESCGTVRFSDVGWTDITATTATATTILEALGYETDVKVLSVPVTYTSLKNKDIDVFLGNWMPTME---ADIAPYREDK 78 (298)
T ss_dssp --CCTTEEEEECCSCHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHTSCCEEEEEEETTTH---HHHHHHHTTT
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCH---HHHHHHHHHC
T ss_conf 8144897699746976699999999999998699248986870999999987998088404664001---6679988614
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC--HHHCCEEEECCCCCCH
Q ss_conf 22234720001222223443450588873344013445578888408--6676859962898304
Q gi|254780563|r 99 LIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTN--AQWKKRLSIAPNNISF 161 (195)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~--p~~kG~i~~~~~~~s~ 161 (195)
........ ......++++.... .. .-.+|+.||.+ +++++++...++....
T Consensus 79 ~~~~l~~~----------~~~~~~~~~v~~~~-a~-~~i~sisDL~~~~~~~~~~i~g~~~~~~~ 131 (298)
T 2rin_A 79 SVETVREN----------LAGAKYTLATNAKG-AE-LGIKDFKDIAAHKDELDGKIYGIEPGNDG 131 (298)
T ss_dssp SEEEEEEE----------EEEEEEEEEEEHHH-HH-HTCCBGGGSGGGHHHHTSEEECCSTTCHH
T ss_pred CCEECCCC----------CCCCEEEEEECCHH-HH-CCCCCHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 53111444----------56861588753044-44-27674777765355237746722564222
No 64
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=93.44 E-value=0.35 Score=25.24 Aligned_cols=56 Identities=9% Similarity=0.107 Sum_probs=32.9
Q ss_pred CCCCEEE-ECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH-HHHHCCCCCEEEECC
Q ss_conf 5880899-81899899999999999875986210000135667-652106665575042
Q gi|254780563|r 25 TTKYLTL-YTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRP-PITQGSPVDVIITKD 81 (195)
Q Consensus 25 ~~~~lvV-Ys~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~-~~~~~~~~d~~~~~d 81 (195)
.+++++| |++.+....+.+.+.| ++.|++|+++..++.... .+..+...|+.+...
T Consensus 37 ~~k~i~IG~~~~~~~~~~~~~~~~-kk~Gl~Ve~~~F~d~~~~~~AL~~G~ID~~~~~~ 94 (295)
T 1p99_A 37 NDKKVTIGVASNDTKAWEKVKELA-KKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQH 94 (295)
T ss_dssp ---CEEEEESSSCCHHHHHHHHHH-GGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHH-HHCCCEEEEEEECCCHHHHHHHHCCCCCEEECCC
T ss_conf 996499996798389999999999-9759889999817827799999759967675178
No 65
>3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium}
Probab=92.85 E-value=0.43 Score=24.72 Aligned_cols=65 Identities=5% Similarity=0.062 Sum_probs=37.7
Q ss_pred CCCCCCCCEEE-ECCCC--H----HHHHHHHHHHHHHCCC--CCCCCCHHH-HHHHHHHHCCCCCEEEECCHHHH
Q ss_conf 24445880899-81899--8----9999999999987598--621000013-56676521066655750422332
Q gi|254780563|r 21 STENTTKYLTL-YTDQN--Q----SVMLPIIHSFEERTGV--KISPIYTSS-IQRPPITQGSPVDVIITKDETSL 85 (195)
Q Consensus 21 ~~~~~~~~lvV-Ys~~~--~----~~~~~~~~~Fek~tgI--kV~~~~~~~-~~~~~~~~~~~~d~~~~~d~~~l 85 (195)
|+..+.++|++ ++... . ..-+|+.+.++++.|+ +|++...++ ...+.+.+....|+.+.......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~Ls~~l~~~V~V~~~~~~Dy~~~ieal~~g~~Dia~~gp~~yv 76 (344)
T 3myu_A 2 CATKSDNTLIFNISLDHNADTSIEKFFTVFSKKLSGKLNKKINVNFNIVDDSFTKINNIQANKADFAFVNSQAIA 76 (344)
T ss_dssp ------CEEEEEECCCTTGGGTHHHHHHHHHHHHHHHHTSCCEEEEEECCCHHHHHHHHHTTSCSEEEECGGGCC
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCEEEECCHHHH
T ss_conf 877888816999604888578899999999999999868965899996487999999997799568997909999
No 66
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=92.48 E-value=0.48 Score=24.43 Aligned_cols=56 Identities=4% Similarity=0.027 Sum_probs=31.3
Q ss_pred CCCEEE-ECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH-HHHHHCCCCCEEEECC
Q ss_conf 880899-8189989999999999987598621000013566-7652106665575042
Q gi|254780563|r 26 TKYLTL-YTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQR-PPITQGSPVDVIITKD 81 (195)
Q Consensus 26 ~~~lvV-Ys~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~-~~~~~~~~~d~~~~~d 81 (195)
+++|.| |...+...+-.+++++=++.|++|+++..++... .....+...|+.+...
T Consensus 2 ~~ti~iG~~~~~~~~~l~~~k~~~k~~Gl~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~ 59 (241)
T 1xs5_A 2 DETVGVGVLSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQH 59 (241)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEE
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEECC
T ss_conf 9329999606985999999999999749889999938817789999769976798557
No 67
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=86.13 E-value=1.6 Score=21.53 Aligned_cols=115 Identities=9% Similarity=0.099 Sum_probs=61.8
Q ss_pred CCCEEE--ECCCCHH----HHHHHHHHHHHHCCCCCCCCCHHHHHH-HHHHHCCCCCEEEECCHHHHHH-HHHHHCCCCC
Q ss_conf 880899--8189989----999999999987598621000013566-7652106665575042233234-3310000123
Q gi|254780563|r 26 TKYLTL--YTDQNQS----VMLPIIHSFEERTGVKISPIYTSSIQR-PPITQGSPVDVIITKDETSLAL-NEDLLHKLPA 97 (195)
Q Consensus 26 ~~~lvV--Ys~~~~~----~~~~~~~~Fek~tgIkV~~~~~~~~~~-~~~~~~~~~d~~~~~d~~~l~~-~~~~l~~~~~ 97 (195)
.++|++ .+..+.. .-+|+++..+++.|++|+++...+-+. +........|+.+......+.. ......++..
T Consensus 3 ~~~l~fg~~p~~~~~~~~~~~~pl~~~L~~~lG~~V~~~~~~dy~~~ieal~~g~vDia~~~~~~~~~a~~~~~~~~~~~ 82 (310)
T 3n5l_A 3 QPVINFGIISTESSQNLKSIWEPFLKDMSQQTGYQVKAFFAPDYAGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQ 82 (310)
T ss_dssp CCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHSSEEEEECCSSHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCEEEEE
T ss_conf 98699997789999999999999999999976995799975999999999976998689989289999986059805665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCC-EEEECCCCC
Q ss_conf 42223472000122222344345058887334401344557888840866768-599628983
Q gi|254780563|r 98 HLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKK-RLSIAPNNI 159 (195)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG-~i~~~~~~~ 159 (195)
. ...+|. ..+..+++++.+ ...++++||.. +-|| .+++.++++
T Consensus 83 ~---------~~~~g~----~~y~s~liv~~d-----s~i~sl~DL~g-k~kg~~~a~~d~~S 126 (310)
T 3n5l_A 83 T---------VAASGA----PGYWSLLIANKD-----SKIDSLEDMLA-NAKSLTFGNGDPNS 126 (310)
T ss_dssp E---------EETTCC----SEEEEEEEEETT-----CSCCSHHHHHH-TGGGCEEEECCTTC
T ss_pred E---------ECCCCC----CCCEEEEEEECC-----CCCCCHHHHHH-HCCCCEECCCCCCC
T ss_conf 2---------034788----761089999688-----77665777741-00000002478763
No 68
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding domain, cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=85.49 E-value=1.7 Score=21.34 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=40.9
Q ss_pred CCCCCEEEECCC--CHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 458808998189--9899999999999875-98621000013566765210666557504
Q gi|254780563|r 24 NTTKYLTLYTDQ--NQSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 24 ~~~~~lvVYs~~--~~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
..+++|.|-++. ......+++..|.+++ +|++++..+...+.....++...|+.+..
T Consensus 11 ~~~G~lrIg~~~~~a~~~Lp~~l~~f~~~~P~i~l~i~~~~~~~l~~~L~~g~~D~ai~~ 70 (228)
T 2fyi_A 11 DTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp TCCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEES
T ss_pred CCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEE
T ss_conf 997179999758899999999999999988994899996765999999866883323331
No 69
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=76.16 E-value=3.6 Score=19.42 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=26.0
Q ss_pred HCCCCCCCCEEE-ECCCCH-HHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 124445880899-818998-99999999999875986210000135
Q gi|254780563|r 20 FSTENTTKYLTL-YTDQNQ-SVMLPIIHSFEERTGVKISPIYTSSI 63 (195)
Q Consensus 20 ~~~~~~~~~lvV-Ys~~~~-~~~~~~~~~Fek~tgIkV~~~~~~~~ 63 (195)
++.....++|+| ++..+. +.+...++.+-++.||+|+++..++.
T Consensus 16 ~~~~~~~~~i~ig~~~~~~~~~~~~~v~~~~k~~Gi~Ve~v~f~d~ 61 (275)
T 3gxa_A 16 ADNGAAKKEIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDY 61 (275)
T ss_dssp -------CEEEEEEETTHHHHHHHHTHHHHHHTTTCEEEEEEESSS
T ss_pred CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 5677888528999606987999999989999965987999995783
No 70
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=70.19 E-value=5.1 Score=18.58 Aligned_cols=49 Identities=18% Similarity=0.074 Sum_probs=30.2
Q ss_pred CEEEE-CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 08998-18998999999999998759862100001356676521066655
Q gi|254780563|r 28 YLTLY-TDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDV 76 (195)
Q Consensus 28 ~lvVY-s~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~ 76 (195)
+|+.- |+...-+++.+.++|++++|++|.+..+++..-.....+...|+
T Consensus 3 ~i~g~GSs~v~p~~~~~a~~f~~~~~~~v~~~~~GSg~G~~~~~~G~~di 52 (321)
T 1ixh_A 3 SLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDF 52 (321)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHTTCSSE
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCE
T ss_conf 08997171799999999999998589868997478699999997499838
No 71
>3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} PDB: 3n26_A*
Probab=67.49 E-value=5.8 Score=18.26 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=41.9
Q ss_pred HHCCCCCCCCEEEECCCC-------------HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 612444588089981899-------------89999999999987598621000013566765210666557504
Q gi|254780563|r 19 AFSTENTTKYLTLYTDQN-------------QSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 19 ~~~~~~~~~~lvVYs~~~-------------~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
|.++-+.+++++|.+..+ ......+++++.++.|++++++..+-.+.....+....|.++..
T Consensus 2 ~~~~~~~~~~l~Vg~~~~~~P~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~d~i~~~ 76 (246)
T 3g41_A 2 CESKIDRNRIWIVGTNATYPPFEYVDAQGEVVGFDIDLAKAISEKLGKQLEVREFAFDALILNLKKHRIDAILAG 76 (246)
T ss_dssp -----CCCCEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSSSEECSC
T ss_pred CCCHHCCCCCEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEE
T ss_conf 612020589599998998899348999998887299999999999699669998898999999975998879662
No 72
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=67.10 E-value=5.9 Score=18.21 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHCC--CCCCCCCHH
Q ss_conf 999999999998759--862100001
Q gi|254780563|r 38 SVMLPIIHSFEERTG--VKISPIYTS 61 (195)
Q Consensus 38 ~~~~~~~~~Fek~tg--IkV~~~~~~ 61 (195)
...+.+.+..+++|| |+|++..++
T Consensus 49 ~~~~~fa~~V~e~T~G~v~i~~~~~g 74 (365)
T 2hzl_A 49 GGAEVLSKMLSEATDGNFQIQVFSAG 74 (365)
T ss_dssp HHHHHHHHHHHHHTTTSSEEEEECTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99999999999975991999996186
No 73
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=62.47 E-value=7.3 Score=17.70 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=38.0
Q ss_pred CCCEEEECCC--CHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8808998189--9899999999999875-9862100001356676521066655750
Q gi|254780563|r 26 TKYLTLYTDQ--NQSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVIIT 79 (195)
Q Consensus 26 ~~~lvVYs~~--~~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~~ 79 (195)
+++|.|-+.. ......++++.|.+++ +|++++..+.+.+..........|+.+.
T Consensus 3 ~G~lrIG~~~s~~~~~lp~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~D~~i~ 59 (219)
T 3jv9_A 3 EGAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIV 59 (219)
T ss_dssp CCCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEE
T ss_pred CEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEE
T ss_conf 028999977788999999999999998889289999887377776561695888750
No 74
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, ION-dipole interactions, electrostatics; 2.16A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1
Probab=59.91 E-value=8.1 Score=17.43 Aligned_cols=41 Identities=20% Similarity=-0.029 Sum_probs=28.2
Q ss_pred CCCEEEECC-CCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHH
Q ss_conf 880899818-99899999999999875-986210000135667
Q gi|254780563|r 26 TKYLTLYTD-QNQSVMLPIIHSFEERT-GVKISPIYTSSIQRP 66 (195)
Q Consensus 26 ~~~lvVYs~-~~~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~ 66 (195)
..+|.+=.+ ....+++.+.++|++++ +++|++..+++..-+
T Consensus 26 ~~~i~~~GSst~~p~~~~~a~~f~~~~p~v~v~~~~~GSg~G~ 68 (350)
T 1pc3_A 26 PVTLAETGSTLLYPLFNLWGPAFHERYPNVTITAQGTGSGAGI 68 (350)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHHHHHSTTEEEECCBCCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 7669997507699999999999998888916999367768999
No 75
>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=57.91 E-value=8.8 Score=17.23 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 999999999987---5986210000135667652106665575042
Q gi|254780563|r 39 VMLPIIHSFEER---TGVKISPIYTSSIQRPPITQGSPVDVIITKD 81 (195)
Q Consensus 39 ~~~~~~~~Fek~---tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~d 81 (195)
..-+++++..++ .+++|+++.....+.....++...|++++..
T Consensus 69 ~~~Dl~~~ia~~Lg~~~~~v~~~~~~~~~~~~~l~~g~~d~~~~~~ 114 (292)
T 1xt8_A 69 YDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANF 114 (292)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSC
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCC
T ss_conf 0689999999985589717999963478689999869977113556
No 76
>2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP}
Probab=53.97 E-value=10 Score=16.85 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=40.0
Q ss_pred CCCEEEECC--CCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 880899818--99899999999999875-98621000013566765210666557504
Q gi|254780563|r 26 TKYLTLYTD--QNQSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 26 ~~~lvVYs~--~~~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
+++|.|-+. .......+++..|.+++ +|++++......+......+...|+.+..
T Consensus 4 ~G~lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 4 AGPIAVGCYPALGPTILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp CEEEEEEECGGGTTTTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEE
T ss_pred CEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEE
T ss_conf 2899999688999999999999999988793899998982899987607983588530
No 77
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=48.27 E-value=13 Score=16.32 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=56.1
Q ss_pred CCCCEEE-ECCCCHHHHHHHHH---HHHHHC-CCCCCCCCHHHH-HHHHHHHCCCCCEEEECCHHHHH-HHHHHHCCCCC
Q ss_conf 5880899-81899899999999---999875-986210000135-66765210666557504223323-43310000123
Q gi|254780563|r 25 TTKYLTL-YTDQNQSVMLPIIH---SFEERT-GVKISPIYTSSI-QRPPITQGSPVDVIITKDETSLA-LNEDLLHKLPA 97 (195)
Q Consensus 25 ~~~~lvV-Ys~~~~~~~~~~~~---~Fek~t-gIkV~~~~~~~~-~~~~~~~~~~~d~~~~~d~~~l~-~~~~~l~~~~~ 97 (195)
...+|+| |...... -.+.+ -|+++. |++|+++...+. +......+...|+........+. ...|. + .
T Consensus 27 ~~~~lrIg~~~~~~~--~~va~~~G~f~~~~~~~~v~~~~~~~g~~~~~al~sG~~D~~~~~~~~~~~~~~~G~--~--~ 100 (324)
T 3ksx_A 27 EPAQLRIGYQKAVSS--LVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGA--D--L 100 (324)
T ss_dssp CCSEEEEEEETTCHH--HHHHHHHTHHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESHHHHHHHHTTC--C--E
T ss_pred CCCEEEEEEECCCCH--HHHHHHHCHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCC--C--E
T ss_conf 997599996168657--999998486978389982799978977999999984992889646599999998799--8--5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCE-EEECCCCCCHHHHHHHHHHHHCHH
Q ss_conf 422234720001222223443450588873344013445578888408667685-996289830499999999960869
Q gi|254780563|r 98 HLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKR-LSIAPNNISFHRLLNTMEQTPNKT 175 (195)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~-i~~~~~~~s~~~~~~a~~~~~G~~ 175 (195)
.. +...... .....++...+ ...+++.|| ||| |+++ .+++.+.++..++...|-+
T Consensus 101 ~~---v~~~~~~---------~~~~~iv~~~~-----s~i~s~~DL-----kGK~v~v~-~gs~~~~~l~~~L~~~Gl~ 156 (324)
T 3ksx_A 101 LY---VGWVPPT---------PKAETILVPSK-----SALRTVADL-----KGKRIAFQ-KGSSAHNLLLRVLAKSGLS 156 (324)
T ss_dssp EE---EEEECCC---------GGGEEEEEETT-----CSCCSGGGG-----TTCEEEEC-TTSHHHHHHHHHHHHTTCC
T ss_pred EE---EEEEECC---------CCCEEEEEECC-----CCCCCHHHH-----CCCEEEEE-CCCCCHHHHHHHHHHCCCC
T ss_conf 99---9989637---------98428998089-----999997893-----89989875-6873067999999987997
No 78
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, non-classical hydrogen bonds; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A
Probab=47.03 E-value=4.8 Score=18.72 Aligned_cols=56 Identities=9% Similarity=0.135 Sum_probs=30.6
Q ss_pred CCCCCCEEEEC-CC-CHHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHHHCCCCCEEE
Q ss_conf 44588089981-89-9899999999999875986210000--135667652106665575
Q gi|254780563|r 23 ENTTKYLTLYT-DQ-NQSVMLPIIHSFEERTGVKISPIYT--SSIQRPPITQGSPVDVII 78 (195)
Q Consensus 23 ~~~~~~lvVYs-~~-~~~~~~~~~~~Fek~tgIkV~~~~~--~~~~~~~~~~~~~~d~~~ 78 (195)
+.++++|+|=+ .. +..++..|+...=++.|.+|+++.. +........+....|++.
T Consensus 2 s~~~~~v~Ig~~~w~~~~~~a~i~~~~Le~~Gy~Ve~~~~~~~~~~~~~al~~GdiDv~~ 61 (275)
T 1sw5_A 2 SQSSERVVIGSKPFNEQYILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYV 61 (275)
T ss_dssp ----CCEEECCCSSHHHHHHHHHHHHHHHHTTCCEEECTTCCSHHHHHHHHHHTSSSEEE
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEE
T ss_conf 988998799678885999999999999998699659986478608899999769977897
No 79
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum GMI1000}
Probab=46.53 E-value=6.3 Score=18.04 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 902599999999999998612
Q gi|254780563|r 1 MFKRTIYTYLLLLCGFTEAFS 21 (195)
Q Consensus 1 mmkk~~~~~l~l~~~~~~~~~ 21 (195)
||||.+...+++++++++.++
T Consensus 1 M~k~~~~~l~~~l~~~~~~~~ 21 (211)
T 2qgu_A 1 MFKKLLHSLVAGLTFVAAVAA 21 (211)
T ss_dssp ---------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHC
T ss_conf 948999999999999999845
No 80
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis}
Probab=46.53 E-value=14 Score=16.16 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=40.3
Q ss_pred HCCCCCCCCEEEECC--------CC-----HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 124445880899818--------99-----89999999999987598621000013566765210666557504
Q gi|254780563|r 20 FSTENTTKYLTLYTD--------QN-----QSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 20 ~~~~~~~~~lvVYs~--------~~-----~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
.++.+.+++|+|-+. .+ ....-.+++++-++.|++|+++..+-.+.....+....|++++.
T Consensus 4 ~~~~~~~~~l~Vg~~~~~pP~~~~~~~G~~~G~~vDi~~~ia~~lg~~v~~~~~~~~~~~~~l~~g~~d~~~~~ 77 (242)
T 3del_B 4 EGGDSNSEKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITG 77 (242)
T ss_dssp -------CEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSSSEECSS
T ss_pred CCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCCCC
T ss_conf 67778899699998998899158999998887299999999999699769997898999999975986610035
No 81
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR structural genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli K12} PDB: 3hfu_A
Probab=45.81 E-value=14 Score=16.10 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=37.6
Q ss_pred CCCCEEEECCC--CHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 58808998189--9899999999999875-9862100001356676521066655750
Q gi|254780563|r 25 TTKYLTLYTDQ--NQSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVIIT 79 (195)
Q Consensus 25 ~~~~lvVYs~~--~~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~~ 79 (195)
..++|.|-... ......+++..|.+++ +|+|++..+...+......+...|+.+.
T Consensus 28 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~l~~~l~~g~~D~~i~ 85 (238)
T 2hxr_A 28 TRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIA 85 (238)
T ss_dssp ---CEEEEECHHHHTTTHHHHHHHHHHHCTTSCEEEEECCHHHHHHHHHTTSCSEEEE
T ss_pred CCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHHH
T ss_conf 8428999953789999999999999998899889973288799999998698300120
No 82
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=44.13 E-value=15 Score=15.94 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=36.0
Q ss_pred CCCCEEEECC--CCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5880899818--99899999999999875-9862100001356676521066655750
Q gi|254780563|r 25 TTKYLTLYTD--QNQSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVIIT 79 (195)
Q Consensus 25 ~~~~lvVYs~--~~~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~~ 79 (195)
-+++|.|-.. .......++++.|.+++ +|+|++..+.+.+..........|+.+.
T Consensus 9 ~~G~l~ig~~~s~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~L~~g~iD~~i~ 66 (232)
T 3ho7_A 9 LTGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAII 66 (232)
T ss_dssp -CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEE
T ss_pred CEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEE
T ss_conf 6279999943778999999999999998889689999898289999997798428986
No 83
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=42.08 E-value=16 Score=15.76 Aligned_cols=54 Identities=7% Similarity=0.093 Sum_probs=30.3
Q ss_pred CCCCEEE-ECCCCHHHH-HHHHHHHHHHCCCCCCCCCHHHH-HHHHHHHCCCCCEEE
Q ss_conf 5880899-818998999-99999999875986210000135-667652106665575
Q gi|254780563|r 25 TTKYLTL-YTDQNQSVM-LPIIHSFEERTGVKISPIYTSSI-QRPPITQGSPVDVII 78 (195)
Q Consensus 25 ~~~~lvV-Ys~~~~~~~-~~~~~~Fek~tgIkV~~~~~~~~-~~~~~~~~~~~d~~~ 78 (195)
...+|.| |+..+...+ ....+.|.++.|++|+++...+. +.+....+...|+..
T Consensus 4 ~~~~irvG~~~~~~~~~~~~~~k~~~e~~Gl~Ve~~~f~~g~~~~~Al~~G~iD~~~ 60 (237)
T 3k2d_A 4 DTSKVKVGVMAGAEAQVAEVAAKVAKEKYGLDVELVTFTDYVTPNAALDDGSIDMNA 60 (237)
T ss_dssp CCCCEEEEEETTHHHHHHHHHHHHHHHHHCCCEEEEEESCTTSHHHHHHHTSCSEEE
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEE
T ss_conf 887389996079859999999777898669889999808825689999769977787
No 84
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=36.67 E-value=19 Score=15.26 Aligned_cols=45 Identities=2% Similarity=-0.040 Sum_probs=33.0
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 588089981899899999999999875986210000135667652
Q gi|254780563|r 25 TTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRPPIT 69 (195)
Q Consensus 25 ~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~ 69 (195)
.++.-+|.+..-+.....+++.+-++.||+|.++...+.+.....
T Consensus 101 ~~Gd~vv~~~~~Yg~t~~~~~~~~~~~Gi~~~~~d~~d~~~~~~a 145 (398)
T 2rfv_A 101 QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAA 145 (398)
T ss_dssp CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
T ss_conf 699989984123552136777541248647753799999999984
No 85
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum}
Probab=35.54 E-value=20 Score=15.15 Aligned_cols=33 Identities=15% Similarity=0.442 Sum_probs=24.5
Q ss_pred EEEECCCCHHH------HHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 89981899899------9999999998759862100001
Q gi|254780563|r 29 LTLYTDQNQSV------MLPIIHSFEERTGVKISPIYTS 61 (195)
Q Consensus 29 lvVYs~~~~~~------~~~~~~~Fek~tgIkV~~~~~~ 61 (195)
-+|||-.++.. .-|++++|++..||.|+...-+
T Consensus 3 kIiyT~tDEAPaLAT~SlLPIi~aF~~~agi~vet~DIS 41 (738)
T 2b0t_A 3 KIIWTRTDEAPLLATYSLKPVVEAFAATAGIEVETRDIS 41 (738)
T ss_dssp EEEEEECSHHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 048743762687777767899999642418747620045
No 86
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=34.74 E-value=21 Score=15.08 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=37.9
Q ss_pred CCCEEEECCC---C---------HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 8808998189---9---------89999999999987598621000013566765210666557504
Q gi|254780563|r 26 TKYLTLYTDQ---N---------QSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 26 ~~~lvVYs~~---~---------~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
.++|+|-+.. + ....-++++++.++.|++++++.....+.+...+....|++++.
T Consensus 41 ~~~l~Vg~~~~~~P~~~~~~G~~~G~~vDl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 107 (272)
T 2pvu_A 41 KKKVVVGTDAAFAPFEYMQKGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISG 107 (272)
T ss_dssp CCCEEEEECCCBTTTBEEETTEEESHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHTSSSEECSS
T ss_pred CCEEEEEECCCCCCCEEEECCEEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEC
T ss_conf 8989999899878935856997788199999999998099659997798999999975996689514
No 87
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=33.06 E-value=22 Score=14.92 Aligned_cols=16 Identities=6% Similarity=0.461 Sum_probs=9.2
Q ss_pred HHHHCCCCCCCCCHHH
Q ss_conf 9987598621000013
Q gi|254780563|r 47 FEERTGVKISPIYTSS 62 (195)
Q Consensus 47 Fek~tgIkV~~~~~~~ 62 (195)
|=++.|++|+++...+
T Consensus 28 ~f~~~Gl~Ve~~~~~~ 43 (302)
T 3ix1_A 28 YFAEEGLDVDIVFPTN 43 (302)
T ss_dssp HHHHTTEEEEEECCSS
T ss_pred HHHHCCCEEEEEECCC
T ss_conf 3898497189995798
No 88
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=33.05 E-value=22 Score=14.92 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=25.1
Q ss_pred EEEECCCCHHH------HHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 89981899899------9999999998759862100001
Q gi|254780563|r 29 LTLYTDQNQSV------MLPIIHSFEERTGVKISPIYTS 61 (195)
Q Consensus 29 lvVYs~~~~~~------~~~~~~~Fek~tgIkV~~~~~~ 61 (195)
-+|||-.++.. .-|++++|.+..||.|+...-+
T Consensus 5 ~IiyT~tDEAP~LAt~SllPIv~aF~~~agi~vet~DIS 43 (741)
T 1itw_A 5 KIIYTLTDEAPALATYSLLPIIKAFTGSSGIAVETRDIS 43 (741)
T ss_dssp EEEEEECSHHHHHHHHHHHHHHHHHHHTTTCEEEEEECS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 368863763688777767899999632418747630055
No 89
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=31.90 E-value=23 Score=14.81 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 999999999987598621000013566765210666557504
Q gi|254780563|r 39 VMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 39 ~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
..-++++++.++.|++++++..+..+.....+...+|++++.
T Consensus 49 ~~vDl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 90 (271)
T 2iee_A 49 YEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAAAND 90 (271)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHTSSSEECSS
T ss_pred EHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEECC
T ss_conf 799999999998399648998999999999976997744024
No 90
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=31.21 E-value=21 Score=15.05 Aligned_cols=23 Identities=9% Similarity=-0.159 Sum_probs=15.5
Q ss_pred CCHHHHCCHHHCCEEEECCCCCC
Q ss_conf 78888408667685996289830
Q gi|254780563|r 138 KSVFDLTNAQWKKRLSIAPNNIS 160 (195)
Q Consensus 138 ~sw~DL~~p~~kG~i~~~~~~~s 160 (195)
.+.+++.+-++.|-+.-+-|+.+
T Consensus 222 ~~~~eI~~~~pDgi~lS~GPG~P 244 (379)
T 1a9x_B 222 TSAEDVLKMNPDGIFLSNGPGDP 244 (379)
T ss_dssp CCHHHHHTTCCSEEEECCCSBCS
T ss_pred CCHHHHHHCCCCEEEECCCCCCC
T ss_conf 99999984199989966999995
No 91
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=30.24 E-value=25 Score=14.64 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 9999999999987598621000013566765210666557504
Q gi|254780563|r 38 SVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 38 ~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
...-++++++.++.|++++++..+-.+.....++..+|++++.
T Consensus 26 G~~~dl~~~ia~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 68 (226)
T 1wdn_A 26 GFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAG 68 (226)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSSSEEEEE
T ss_pred EHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEE
T ss_conf 8799999999999699669997899999999876998657442
No 92
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=28.23 E-value=27 Score=14.44 Aligned_cols=53 Identities=9% Similarity=0.219 Sum_probs=31.6
Q ss_pred CCEEE-ECCC-CHHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 80899-8189-989999999-999987598621000013566765210666557504
Q gi|254780563|r 27 KYLTL-YTDQ-NQSVMLPII-HSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 27 ~~lvV-Ys~~-~~~~~~~~~-~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
++|+| +... +..+...++ +.+| +.|++|+++.+++.......++...|+++..
T Consensus 2 k~i~i~~~~wt~~~~~a~i~~~~Le-~~Gy~Ve~~~~~~~~~~~al~~G~iDi~~e~ 57 (256)
T 3l6g_A 2 KKVDLVYMNWDSEVASINVLTQAMK-EHGFDVKTTALDNAVAWQTVANGQADGMVSA 57 (256)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHH-HTTEEEEEEECCHHHHHHHHHTTSSSEEEEE
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHHCCCCCEEEEC
T ss_conf 7489932698479999999999999-8699459987884899999987998298511
No 93
>3eki_A High affinity transport system protein P37; TPP, cell membrane, lipoprotein, membrane, transport protein, palmitate; HET: TPP; 1.60A {Mycoplasma hyorhinis} PDB: 3e79_A* 3e78_A*
Probab=28.07 E-value=22 Score=15.00 Aligned_cols=33 Identities=15% Similarity=0.036 Sum_probs=16.5
Q ss_pred CCCHHHHCCHHHCCEEEE-CCCCCCHHHHHHH-HHHHHC
Q ss_conf 578888408667685996-2898304999999-999608
Q gi|254780563|r 137 PKSVFDLTNAQWKKRLSI-APNNISFHRLLNT-MEQTPN 173 (195)
Q Consensus 137 P~sw~DL~~p~~kG~i~~-~~~~~s~~~~~~a-~~~~~G 173 (195)
-++|+||- .-+|++ .++|+++.-+=.+ +..++|
T Consensus 237 ~K~WeDf~----~~~I~~~s~SSaSGYiyP~alLkkhFg 271 (403)
T 3eki_A 237 DKDWNTFR----NFGILHGKDNSSSKFKLEETILKNHFQ 271 (403)
T ss_dssp TTCHHHHH----HTCEEECCTTCTTTTHHHHHHHHHHST
T ss_pred CCCHHHHH----CCCEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 28988984----895698679886012889999999708
No 94
>3fd3_A Chromosome replication initiation inhibitor protein; structural genomics, LYSR, PSI-2, protein structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=27.99 E-value=27 Score=14.41 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 999999999875986210000135667652106665575042
Q gi|254780563|r 40 MLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKD 81 (195)
Q Consensus 40 ~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~d 81 (195)
.-|.+.+|.++++|+|++............+....|+.+...
T Consensus 17 l~P~L~~f~~~~pi~l~l~~~~~~~~~~~l~~g~~D~aI~~~ 58 (208)
T 3fd3_A 17 FLDAVSKFTGGSDYLVNIAVDDQDHTVEWLRGGRVLAAVTAH 58 (208)
T ss_dssp HHHHHHHHHHTSSCEEEEEECCSSCHHHHHHTTSCSEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEEECCHHHHHHHHCCCEEEEEECC
T ss_conf 999999999979797999994566278887579759999838
No 95
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=27.58 E-value=9.6 Score=17.01 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9025999999999
Q gi|254780563|r 1 MFKRTIYTYLLLL 13 (195)
Q Consensus 1 mmkk~~~~~l~l~ 13 (195)
||||.++..+.++
T Consensus 1 m~~~~~~~~~~~~ 13 (163)
T 1w5c_T 1 MLKKCVWLAVALC 13 (163)
T ss_dssp -------------
T ss_pred CCHHHHHHHHHHH
T ss_conf 9426899999999
No 96
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=25.92 E-value=30 Score=14.19 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=41.7
Q ss_pred HCCCCCCCCEEEECCCC--HHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 12444588089981899--899999999999875-98621000013566765210666557504
Q gi|254780563|r 20 FSTENTTKYLTLYTDQN--QSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 20 ~~~~~~~~~lvVYs~~~--~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
|--...+.+++|..+.. .....+++..|.+++ |+++++......+..........|+.++.
T Consensus 12 FdP~~~~~~~rI~~~~~~~~~~lp~ll~~l~~~~P~v~i~l~~~~~~~~~~~L~~g~iDl~I~~ 75 (241)
T 3oxn_A 12 FDPQQCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp --CCSCCCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEEC
T ss_pred CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEC
T ss_conf 8920068689999737999999999999999988692899997987999999975985422202
No 97
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=25.90 E-value=30 Score=14.19 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=33.7
Q ss_pred CCCEEEECC--CCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 880899818--99899999999999875-986210000135667652106665575
Q gi|254780563|r 26 TKYLTLYTD--QNQSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVII 78 (195)
Q Consensus 26 ~~~lvVYs~--~~~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~ 78 (195)
+++|.|=.. .......+++..|.+++ +|++++......+......+...|+.+
T Consensus 4 ~G~lrIg~~~~~~~~~lp~~l~~f~~~~P~v~i~i~~~~~~~l~~~l~~~~~d~~~ 59 (219)
T 1i6a_A 4 SGPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDAVI 59 (219)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEE
T ss_pred EEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCHHHH
T ss_conf 18999983777999999999999999888968999988848888887536401010
No 98
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=24.96 E-value=31 Score=14.09 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=22.0
Q ss_pred CCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 4588089981899--8999999999998759862100001
Q gi|254780563|r 24 NTTKYLTLYTDQN--QSVMLPIIHSFEERTGVKISPIYTS 61 (195)
Q Consensus 24 ~~~~~lvVYs~~~--~~~~~~~~~~Fek~tgIkV~~~~~~ 61 (195)
...+-|+||.+.. +.+.+.+.+..+++ |++|+++.-.
T Consensus 3 ~~~kvliiy~S~GnT~~la~ai~~Ga~~~-G~ev~~~~l~ 41 (199)
T 2zki_A 3 CKPNILVLFYGYGSIVELAKEIGKGAEEA-GAEVKIRRVR 41 (199)
T ss_dssp CCCEEEEEECCSSHHHHHHHHHHHHHHHH-SCEEEEEECC
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHC-CCEEEEEECC
T ss_conf 99869999818358999999999988764-9889999766
No 99
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=24.51 E-value=32 Score=14.04 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=33.7
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 588089981899899999999999875986210000135667652106665575
Q gi|254780563|r 25 TTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVII 78 (195)
Q Consensus 25 ~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~ 78 (195)
..+.-+|.+..-+.....+++.+-++.||+|.++.....+.....-.....+++
T Consensus 102 ~~Gd~vv~~~~~Yg~t~~l~~~~l~~~Gi~~~~~d~~d~~~~~~ai~~~Tklv~ 155 (398)
T 1gc0_A 102 RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIY 155 (398)
T ss_dssp CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEE
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHCCCCCEEEE
T ss_conf 799866535753213455554113358668634688899999985587862999
No 100
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=24.46 E-value=14 Score=16.05 Aligned_cols=14 Identities=7% Similarity=0.441 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 02599999999999
Q gi|254780563|r 2 FKRTIYTYLLLLCG 15 (195)
Q Consensus 2 mkk~~~~~l~l~~~ 15 (195)
|||+++..++++++
T Consensus 1 mkk~l~~~~~~~~~ 14 (130)
T 2a3m_A 1 MRKSLFAVMVLALV 14 (130)
T ss_dssp --------------
T ss_pred CHHHHHHHHHHHHH
T ss_conf 90499999999999
No 101
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*
Probab=24.18 E-value=13 Score=16.23 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=7.4
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999999987598621
Q gi|254780563|r 41 LPIIHSFEERTGVKIS 56 (195)
Q Consensus 41 ~~~~~~Fek~tgIkV~ 56 (195)
++.++.+ |+.|+++.
T Consensus 72 ~~~i~~i-k~~Gfn~v 86 (395)
T 2jep_A 72 PELIKKV-KAAGFKSI 86 (395)
T ss_dssp HHHHHHH-HHTTCCEE
T ss_pred HHHHHHH-HHCCCCEE
T ss_conf 9999999-98399869
No 102
>2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET: M5P; 2.30A {Pseudomonas putida} SCOP: d.157.1.1
Probab=23.85 E-value=33 Score=13.96 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89989999999999987598621000
Q gi|254780563|r 34 DQNQSVMLPIIHSFEERTGVKISPIY 59 (195)
Q Consensus 34 ~~~~~~~~~~~~~Fek~tgIkV~~~~ 59 (195)
+.+....+.+++..++.++-+|+++-
T Consensus 86 g~~~~~~~~l~~~i~~~~~~pi~~vi 111 (266)
T 2yz3_A 86 AWGAKNTAALLAEIEKQIGLPVTRAV 111 (266)
T ss_dssp CSSHHHHHHHHHHHHHHTCSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99989999999999984399727999
No 103
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=23.74 E-value=33 Score=13.95 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=28.4
Q ss_pred CCCCCCEEEECCC---CHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 4458808998189---989999999999987598621000013566
Q gi|254780563|r 23 ENTTKYLTLYTDQ---NQSVMLPIIHSFEERTGVKISPIYTSSIQR 65 (195)
Q Consensus 23 ~~~~~~lvVYs~~---~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~ 65 (195)
..+...||+|+.. .=..+.|+++++.+++++++..+..+....
T Consensus 26 ~~~~~~vVlf~a~wC~~C~~~~p~l~~l~~e~~~~~~~VDid~~~~ 71 (107)
T 2fgx_A 26 QVEPRKLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDGNEH 71 (107)
T ss_dssp CCCCCCEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTTCHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 7888889999899997488899999997643463047887023599
No 104
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=23.08 E-value=34 Score=13.88 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=28.5
Q ss_pred CCCCEEEECC--CCHHHHHHHHHHHHHHC-CCCCCCCCHHHHH
Q ss_conf 5880899818--99899999999999875-9862100001356
Q gi|254780563|r 25 TTKYLTLYTD--QNQSVMLPIIHSFEERT-GVKISPIYTSSIQ 64 (195)
Q Consensus 25 ~~~~lvVYs~--~~~~~~~~~~~~Fek~t-gIkV~~~~~~~~~ 64 (195)
-++.|.|-++ .......+++.+|.++| +|++++...+...
T Consensus 5 ~~G~lrI~~~~~~~~~~L~p~l~~F~~~~P~v~i~i~~~~~~~ 47 (213)
T 3hhf_B 5 PQGVLSVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSSEGYI 47 (213)
T ss_dssp CCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEECCSTTH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH
T ss_conf 4279999138899999999999999998849799999756301
No 105
>3b55_A Succinoglycan biosynthesis protein; Q81BN2, NESG, BCR135, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus cereus atcc 14579} SCOP: c.150.1.3 PDB: 2rad_A
Probab=22.66 E-value=35 Score=13.83 Aligned_cols=45 Identities=9% Similarity=0.060 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCC-EEEEC--CCCHHHHHHHHHH
Q ss_conf 025999999999999986124445880-89981--8998999999999
Q gi|254780563|r 2 FKRTIYTYLLLLCGFTEAFSTENTTKY-LTLYT--DQNQSVMLPIIHS 46 (195)
Q Consensus 2 mkk~~~~~l~l~~~~~~~~~~~~~~~~-lvVYs--~~~~~~~~~~~~~ 46 (195)
|||++..+++.++++++.|.+...+++ ..|.+ ..+......+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 48 (451)
T 3b55_A 1 MKKKIIIAIVASAITMTHFVGNTYADSKTEVSVTAPYNTNQIAKWLEA 48 (451)
T ss_dssp -----------------------------------CCCHHHHHHHHHH
T ss_pred CCCEEHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 972300799999999856104410444214332577772889999996
No 106
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=21.99 E-value=36 Score=13.75 Aligned_cols=55 Identities=9% Similarity=-0.001 Sum_probs=31.3
Q ss_pred CCCEEEECC--CCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 880899818--99899999999999875-98621000013566765210666557504
Q gi|254780563|r 26 TKYLTLYTD--QNQSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 26 ~~~lvVYs~--~~~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
.+.+.+.+. .......+++..|.+++ ++++.+......+..........|+.++.
T Consensus 90 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~p~v~~~i~~~~~~~~~~~l~~g~~Di~i~~ 147 (294)
T 1ixc_A 90 VGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp CEEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHCCCCCCCCCEEEEEEC
T ss_conf 5237873253079999999999975318764443045203100321147964688851
No 107
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=21.65 E-value=16 Score=15.68 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 025999999999999
Q gi|254780563|r 2 FKRTIYTYLLLLCGF 16 (195)
Q Consensus 2 mkk~~~~~l~l~~~~ 16 (195)
|||.++...++++++
T Consensus 1 Mkk~~~~l~~~~l~~ 15 (191)
T 1y0g_A 1 MKKSLLGLTFASLMF 15 (191)
T ss_dssp ---------------
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 933699999999997
No 108
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=21.27 E-value=37 Score=13.66 Aligned_cols=55 Identities=7% Similarity=-0.014 Sum_probs=36.3
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 4588089981899899999999999875986210000135667652106665575
Q gi|254780563|r 24 NTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVII 78 (195)
Q Consensus 24 ~~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~ 78 (195)
...+.-+|.+..-+.....+++.+-++.||++.++..++.+...+.-.....++|
T Consensus 117 ~~~Gd~iv~~~~~Yggt~~~~~~~l~~~gi~~~~vd~~d~~~~~~~i~~~t~lI~ 171 (414)
T 3ndn_A 117 LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVF 171 (414)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCEEEE
T ss_conf 0689989982686134599986421067759998679876789976341445999
No 109
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductase; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=21.19 E-value=37 Score=13.65 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHHHCCCCCEEE
Q ss_conf 899899999999999875986210000-------135667652106665575
Q gi|254780563|r 34 DQNQSVMLPIIHSFEERTGVKISPIYT-------SSIQRPPITQGSPVDVII 78 (195)
Q Consensus 34 ~~~~~~~~~~~~~Fek~tgIkV~~~~~-------~~~~~~~~~~~~~~d~~~ 78 (195)
+.....+.++.+..++ -|++|++--- +-...++++-+-|-|.+.
T Consensus 60 AQAQh~V~EL~~~L~~-~G~~V~faIHPVAGRmPGhmNVLLAEa~VpYd~~~ 110 (203)
T 2fsv_C 60 AQAQHALREMADVLKK-EGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVF 110 (203)
T ss_dssp HTCHHHHHHHHHHHHH-TTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCEEEEEEEECCCHHHHH
T ss_conf 9999999999999996-89824898632434488720689986169878863
Done!