HHSEARCH alignment of GI: 254780563 and SCOP domain: d1j1na_

Alignment

Probab=97.25  E-value=4.2e-05  Score=46.21  Aligned_cols=120  Identities=13%  Similarity=0.125  Sum_probs=68.2

Q ss_pred             CCCCEEEECCCCHH----HHHHHHHHHHHHCCCCCCCCCHH---HH-HH---HHHHHCCCCCEEEECC-HHH--HHHHHH
Q ss_conf             58808998189989----99999999998759862100001---35-66---7652106665575042-233--234331
Q gi|254780563|r   25 TTKYLTLYTDQNQS----VMLPIIHSFEERTGVKISPIYTS---SI-QR---PPITQGSPVDVIITKD-ETS--LALNED   90 (195)
Q Consensus        25 ~~~~lvVYs~~~~~----~~~~~~~~Fek~tgIkV~~~~~~---~~-~~---~~~~~~~~~d~~~~~d-~~~--l~~~~~   90 (195)
                      ..-+|++|.+....    ...++.+.+++++||+|+++...   .. +.   ++.. +...|+++..+ ...  .....|
T Consensus         9 ~pvtl~~~~~~~~~~~~~~~~~~~~~~~e~~gikv~~~~~~~~~~~~~kl~~~las-g~~PDii~~~~~~~~~~~~~~~G   87 (492)
T d1j1na_           9 KPLTLKIHMHFRDKWVWDENWPVAKESFRLTNVKLQSVANKAATNSQEQFNLMMAS-GDLPDVVGGDNLKDKFIQYGQEG   87 (492)
T ss_dssp             SCEEEEEEEEETTTEECCTTSHHHHHHHHHHSEEEEECSCTTCCCHHHHHHHHHTS-SCCCSEEEESSCHHHHHHHHHTT
T ss_pred             CCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHC-CCCCEEEEECCCHHHHHHHHHCC
T ss_conf             98799999846865453326199999735769689999668977899999999978-99787999898469999999889


Q ss_pred             HHCCCCCCC----------CCCCCC---CCCCCCCCCCCCCC-----CEEEEEEEHHHHCCC--CCCCCHHHHCC
Q ss_conf             000012342----------223472---00012222234434-----505888733440134--45578888408
Q gi|254780563|r   91 LLHKLPAHL----------IKKNSF---VLKNENKKLMRISF-----DTQVLAYSTKRIKIA--DLPKSVFDLTN  145 (195)
Q Consensus        91 ~l~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~n~~~~~~~--~~P~sw~DL~~  145 (195)
                      .+.++..-.          ....+.   .....+|..+++..     ...++.||++.++..  ++|++|+||.+
T Consensus        88 ~l~dL~d~~~~~~~~~~~~~~~~~~~~~~~~~~dGk~YgiP~~~~~~~~~~~~ynkd~~~~~Gl~~p~t~de~~~  162 (492)
T d1j1na_          88 AFVPLNKLIDQYAPHIKAFFKSHPEVERAIKAPDGNIYFIPYVPDGVVARGYFIREDWLKKLNLKPPQNIDELYT  162 (492)
T ss_dssp             SBCCCHHHHHHHCHHHHHHHHHCHHHHHHHCCTTSCCCCEEEECCCSCCEEEEEEHHHHHHTTCCCCCBHHHHHH
T ss_pred             CEEECHHHHHHHCHHHHHHHHHCHHHHHHHCCCCCEEEEEEEECCCCCCEEEEECHHHHHHHHHHCCCCCHHHHH
T ss_conf             989887999761711688887678999971340883999987336763201476189999865420211036999

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Alginate-binding periplasmic protein AlgQ2
species: Sphingomonas sp. [TaxId: 28214]