HHSEARCH alignment of GI: 254780563 and SCOP domain: d1nnfa_

Alignment
>d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]}
Probab=99.93  E-value=3.3e-25  Score=160.85  Aligned_cols=163  Identities=20%  Similarity=0.355  Sum_probs=138.2

Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HH-HHCCCCCEEEECCHHHH--HHHHHHHCCCCCCCCC
Q ss_conf             089981899899999999999875986210000135667---65-21066655750422332--3433100001234222
Q gi|254780563|r   28 YLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRP---PI-TQGSPVDVIITKDETSL--ALNEDLLHKLPAHLIK  101 (195)
Q Consensus        28 ~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~---~~-~~~~~~d~~~~~d~~~l--~~~~~~l~~~~~~~~~  101 (195)
                      ||+|||+.+++.+++++++|||+|||||+++.+++.+.+   .. +.++++||+++.+...+  ..+.|++.++++....
T Consensus         1 ~~~vy~~~~~~~~~~l~~~Fek~tGIkV~~~~~~~~~~~~kl~ae~~~~~~DV~~~~~~~~~~~~~~~gll~~~~~~~~~   80 (308)
T d1nnfa_           1 DITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQ   80 (308)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHHSCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESCGGGHHHHHHTTCBCCCCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCHHHH
T ss_conf             97999388877999999999885598799997981999999997468999888997778999998630136777731110


Q ss_pred             CCCCC--CCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHHHHHHHHHHHCHHHHHH
Q ss_conf             34720--0012222234434505888733440134455788884086676859962898304999999999608699999
Q gi|254780563|r  102 KNSFV--LKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQD  179 (195)
Q Consensus       102 ~~~~~--~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~~~~a~~~~~G~~~~~~  179 (195)
                      .....  ..+.+++|+++.....+++||++.++....|++|+||++++|++++.++++++.+..++.+.....|++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~~~p~t~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  160 (308)
T d1nnfa_          81 QTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALN  160 (308)
T ss_dssp             TTCCTTCCCCTTSCCEEEEEEEEEEEEETTTCCGGGSCSSGGGGGSGGGTTTEEECTTSHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HCCHHHHCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf             01212200134333345322320232015553344554546530382430232133346525766567887517477789


Q ss_pred             HHHHHHHCCCC
Q ss_conf             99998608870
Q gi|254780563|r  180 FIKNITANEIL  190 (195)
Q Consensus       180 ~l~~l~~N~~~  190 (195)
                      ++++|+.|+.+
T Consensus       161 ~~~~l~~~~~~  171 (308)
T d1nnfa_         161 WLKGLKENGKL  171 (308)
T ss_dssp             HHHHHHHHEEE
T ss_pred             HHHHHHHHCCC
T ss_conf             99999871101


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Ferric-binding protein FbpA
species: Haemophilus influenzae [TaxId: 727]