HHSEARCH alignment of GI: 254780563 and SCOP domain: d1pota_

Alignment
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]}
Probab=99.69  E-value=1.2e-17  Score=117.80  Aligned_cols=160  Identities=13%  Similarity=0.158  Sum_probs=103.8

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH----HHHHHCCCCCEEEECCH-HHHHHHHHHHCCCCCCC-
Q ss_conf             8808998189989999999999987598621000013566----76521066655750422-33234331000012342-
Q gi|254780563|r   26 TKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQR----PPITQGSPVDVIITKDE-TSLALNEDLLHKLPAHL-   99 (195)
Q Consensus        26 ~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~----~~~~~~~~~d~~~~~d~-~~l~~~~~~l~~~~~~~-   99 (195)
                      .++|+|||+..+ ..+.++++||++|||+|+++..++.+.    +..+++.+.|+++.... ..-....|++++++... 
T Consensus         1 ~~~l~~~~w~~~-~~~~ii~~Fe~~tgI~V~~~~~~~~~~~~~~l~a~~~~~~Dvv~~~~~~~~~~~~~g~~~~ld~~~~   79 (322)
T d1pota_           1 NNTLYFYNWTEY-VPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKL   79 (322)
T ss_dssp             CEEEEEEEESSS-SCTTHHHHHHHHHCEEEEEEEESCHHHHHHHHTTCSSSCSSBBCCBGGGHHHHHHHTCBCCCCTTSC
T ss_pred             CCEEEEEECCCC-CCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHC
T ss_conf             997999957763-6989999999996987999957999999999980699998099968079999876785233662220


Q ss_pred             --CCCCCCCCCC-----CCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHHHH-HHHHHH
Q ss_conf             --2234720001-----22222344345058887334401344557888840866768599628983049999-999996
Q gi|254780563|r  100 --IKKNSFVLKN-----ENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLL-NTMEQT  171 (195)
Q Consensus       100 --~~~~~~~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~~~-~a~~~~  171 (195)
                        ...+.+.+.+     .+.+..|+.....+++||++.++.. .|++|.||++|+|+|++++.++..+..... ..+...
T Consensus        80 ~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~l~Yn~~~~~~~-~p~sw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  158 (322)
T d1pota_          80 TNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPK-SVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYS  158 (322)
T ss_dssp             TTGGGBCGGGSCCTTSTTCSSCEEEEEEEEEEEEETTTSCTT-TCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCC
T ss_pred             CHHHCCCHHHHCCCCCCCCCEEEEEEEEEEEEEEHHHHCCCC-CCCCHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             002104866521445899836844664233467425440841-1374999848676204555685144568999984357


Q ss_pred             ---HCH---HHHHHHHHHHHHC
Q ss_conf             ---086---9999999998608
Q gi|254780563|r  172 ---PNK---TVVQDFIKNITAN  187 (195)
Q Consensus       172 ---~G~---~~~~~~l~~l~~N  187 (195)
                         .+.   ...+++++++..+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~  180 (322)
T d1pota_         159 GNTTDPKEIEAAYNELKKLMPN  180 (322)
T ss_dssp             TTCCCHHHHHHHHHHHHHTGGG
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC
T ss_conf             4335436677899998875011


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Spermidine/putrescine-binding protein PotD
species: Escherichia coli [TaxId: 562]