HHSEARCH alignment of GI: 254780563 and SCOP domain: d1q35a_

Alignment
>d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]}
Probab=99.96  E-value=7.2e-29  Score=181.76  Aligned_cols=167  Identities=20%  Similarity=0.368  Sum_probs=140.2

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHH-HHCCCCCEEEECCHHHH--HHHHHHHCCCCCCCC
Q ss_conf             8808998189989999999999987598621000013--566765-21066655750422332--343310000123422
Q gi|254780563|r   26 TKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPI-TQGSPVDVIITKDETSL--ALNEDLLHKLPAHLI  100 (195)
Q Consensus        26 ~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~--~~~~~~-~~~~~~d~~~~~d~~~l--~~~~~~l~~~~~~~~  100 (195)
                      ++||+|||+++++.+++++++|||+|||+|+++.+++  .+++.. +.+.++|++++.+...+  ..+.+++.++.++..
T Consensus         1 a~ev~vY~~~~~~~~~~l~~~Fek~tGIkV~~~~~~~~~~~kl~~e~~~~~~Dvv~~~~~~~~~~~~~~g~~~~~~~~~~   80 (318)
T d1q35a_           1 ANEVNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVL   80 (318)
T ss_dssp             CCEEEEEESSCGGGTHHHHHHHHHHHCCEEEEEECC-CCHHHHHHHGGGCCCCEEEESCHHHHHHHHHTTCBCCCCCHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCHHH
T ss_conf             98599996988768999999998866978999979889999999647899998999788899999986375112574554


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCH-HHHHHHHHHHHCHHHHH
Q ss_conf             -2347200012222234434505888733440134455788884086676859962898304-99999999960869999
Q gi|254780563|r  101 -KKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISF-HRLLNTMEQTPNKTVVQ  178 (195)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~-~~~~~a~~~~~G~~~~~  178 (195)
                       ..++..+++.+++|+++.....+++||+++++..+.|+||.||++|+|||+++++++..++ ..++..+....|++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~yN~~~~~~~~~p~s~~dl~~~~~kg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T d1q35a_          81 EKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTK  160 (318)
T ss_dssp             HHHSCGGGBCTTSSCEEEEEEEEEEEEETTTTCSCCTTCCGGGGGSGGGTTCEECSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCHHHHHHCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf             43131665421322100222037887325451356675114443212005737843872266789998776503753678


Q ss_pred             HHHHHHHHCCCCCC
Q ss_conf             99999860887056
Q gi|254780563|r  179 DFIKNITANEILTK  192 (195)
Q Consensus       179 ~~l~~l~~N~~~~~  192 (195)
                      ++++++..|.....
T Consensus       161 ~~~~~~~~~~~~~~  174 (318)
T d1q35a_         161 AFLEGLKANLARKP  174 (318)
T ss_dssp             HHHHHHHHTBSSCC
T ss_pred             HHHHHHHHCCCEEC
T ss_conf             99887652043313


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Ferric-binding protein FbpA
species: Mannheimia haemolytica [TaxId: 75985]