RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780563|ref|YP_003064976.1| extracellular solute-binding
protein [Candidatus Liberibacter asiaticus str. psy62]
         (195 letters)



>1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia
           enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
          Length = 312

 Score = 66.6 bits (161), Expect = 3e-12
 Identities = 37/171 (21%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 23  ENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG--SPVDVII 78
           E+    + +Y  Q+++++   +  F + TG+K++        +    + +G  SP DV +
Sbjct: 1   ESNDSGIVVYNAQHENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFL 60

Query: 79  TKDETSL--ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADL 136
           T++  ++    N  L   L A    + +   + E+ +   I+  + V  Y+ ++I  A+L
Sbjct: 61  TENSPAMVLVDNAKLFAPLDAVTQAQVAQEYRPEHGRWTGIAARSTVFVYNPEKISEAEL 120

Query: 137 PKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187
           PKS+ DL   +WK R + +P+   F  +++ M +   +    +++K +  N
Sbjct: 121 PKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKGEKATLEWLKAMKTN 171


>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding
           protein; beta sheet surrounded by alpha helices; 1.60A
           {Campylobacter jejuni} PDB: 1y4t_A
          Length = 322

 Score = 56.5 bits (135), Expect = 4e-09
 Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 29  LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRPP----ITQGSPVDVIITKDETS 84
           L +Y+ ++ +    II  FEE+TG+K++     + +           SP D+ IT D ++
Sbjct: 4   LNIYSARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITADISN 63

Query: 85  L--ALNEDLLHKL-PAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVF 141
           L  A N  LL  +   +L +     L++++K+   I+   +++AY+          K+  
Sbjct: 64  LTEAKNLGLLSPVSSKYLEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYE 123

Query: 142 DLTNAQWKKRLSIAPNNISFHRLLNTM 168
           DL  A++K  + +      + + L   
Sbjct: 124 DLAKAEFKGEIVMRSATAPYSKTLLAS 150


>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia
           haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
          Length = 320

 Score = 55.0 bits (131), Expect = 1e-08
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 7/166 (4%)

Query: 29  LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG-SPVDVIITKDETSL 85
           + +Y+ +   ++ P++ +FE+ TG+K++ I+     + R       SP DV++T D + +
Sbjct: 4   VNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRV 63

Query: 86  ALNED---LLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFD 142
               +           L K      ++ N +   ++   +V+  S  R+          D
Sbjct: 64  MEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLD 123

Query: 143 LTNAQWKKRLSIAP-NNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187
           L   ++K ++ +    N     L   M +       + F++ + AN
Sbjct: 124 LAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKAN 169


>1nnf_A Iron-utilization periplasmic protein; iron-binding protein,
           EDTA-Fe-protein complex, metal binding protein; HET:
           EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB:
           1mrp_A 1d9v_A 1qvs_A 2o6a_A 2o68_A 2o69_A 1qw0_A 1o7t_A*
           1xc1_A* 1r1n_A* 1d9y_A
          Length = 309

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 8/167 (4%)

Query: 29  LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG--SPVDVIITKDETS 84
           +T+Y  Q +     +  +FE+ TG+K++     S  +      +G  +P DV  T+   +
Sbjct: 2   ITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTAT 61

Query: 85  L--ALNEDLLHKLPAHLIKK--NSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSV 140
                   LL  +    I++     V     K  + +S  ++V+ Y   ++   D+ KSV
Sbjct: 62  FADLSEAGLLAPISEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKSV 121

Query: 141 FDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187
            D    +WK ++     + +F   +  + +     V  +++K +  N
Sbjct: 122 LDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKEN 168


>1y9u_A Putative iron binding protein; periplasmic binding protein, iron
           tyrosinate interaction, metal binding protein; 1.39A
           {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB:
           2ows_A 2owt_A
          Length = 323

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 22/143 (15%), Positives = 52/143 (36%), Gaps = 3/143 (2%)

Query: 29  LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQGSP-VDVIITKDETSL 85
           ++LYT +   ++ P++ +F + +G+K++ ++     ++R          DV++T D  +L
Sbjct: 8   VSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNL 67

Query: 86  ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTN 145
               +            +S V  N           +           +        DL +
Sbjct: 68  IDLVNGGVTQKIQSQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKLDSFRYGDLAD 127

Query: 146 AQWKKRLSIAPNNISFHRLLNTM 168
            +WK ++ I      ++  L   
Sbjct: 128 PKWKGKVCIRSGQHPYNTALVAA 150


>2pt1_A Iron transport protein; C-clamp, iron-binding protein,
           solute-binding protein, periplasmic binding protein, ABC
           transporter, metal transport; 2.00A {Synechocystis SP}
           PDB: 2pt2_A 3f11_A
          Length = 334

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 28/167 (16%), Positives = 69/167 (41%), Gaps = 9/167 (5%)

Query: 29  LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSP-VDVIITKDETS 84
           + LY+ ++ +    +   F   TG+K++ I   +   ++R      +   DV++T D   
Sbjct: 21  INLYSSRHYNTDNELYAKFTAETGIKVNLIEGKADELLERIKSEGANSPADVLLTVDLAR 80

Query: 85  LALNEDLLHKLPAHLIKKNSFV---LKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVF 141
           L   E+     P       + V   L++ +      +   +V+ Y+  ++K  +   +  
Sbjct: 81  LWRAEEDGIFQPVQSEILETNVPEYLRSPDGMWFGFTKRARVIMYNKGKVKPEE-LSTYE 139

Query: 142 DLTNAQWKKRLSIAPNNISF-HRLLNTMEQTPNKTVVQDFIKNITAN 187
           +L + +WK R+ I  ++  +   L+ ++     +     + K   +N
Sbjct: 140 ELADPKWKGRVIIRSSSNEYNQSLVASLVVADGEESTLAWAKGFVSN 186


>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein,
           sugar binding protein, virulence, alpha-glucan, sugar
           transport; HET: GLC; 2.00A {Streptococcus pneumoniae}
           PDB: 2xd2_A*
          Length = 416

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 11  LLLCGFTEAFST-----ENTTKYLTLYTDQNQS-VMLPIIHSFEERTGVKISPIYTSSIQ 64
           L+  G   A         +  K LT+Y D+     +  +  ++E+  GVK++     ++ 
Sbjct: 14  LVPRGSHMASDKPADSGSSEVKELTVYVDEGYKSYIEEVAKAYEKEAGVKVTLKTGDALG 73

Query: 65  RPP-----ITQGSPVDVIITK-DETSLALNEDLLHKLPAHLIKKNSFVLKNE----NKKL 114
                      G+  DV++   D      ++  L ++      K     K+     N K+
Sbjct: 74  GLDKLSLDNQNGNVPDVMMAPYDRVGSLGSDGQLSEVKLSDGAKTDDTTKSLVTAANGKV 133

Query: 115 MRI--SFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNN 158
                  ++ V+ Y+   +K A  PK+  DL N     + + A  +
Sbjct: 134 YGAPAVIESLVMYYNKDLVKDA--PKTFADLENLAKDSKYAFAGED 177


>3h3g_A Fusion protein of maltose-binding periplasmic domain and human
           parathyroid hormone...; GPCR, extracellular domain,
           PTHRP, PTH, PThr1, periplasm, sugar transport,
           transport, membrane protein; HET: MAL; 1.94A
           {Escherichia coli} PDB: 3c4m_A* 3l2j_A* 3ehs_A* 3ehu_A*
           3eht_A*
          Length = 539

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 9   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 68

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV-----LKNENKKLMRI--SFDTQVLAYSTKRIKIAD 135
                   LL ++      ++            N KL+    + +   L Y+   +    
Sbjct: 69  FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNP- 127

Query: 136 LPKSVFDLTNAQWK 149
            PK+  ++     +
Sbjct: 128 -PKTWEEIPALDKE 140


>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
           sugar transport, transport, apoptosis, cytoplasm,
           disease mutation; 3.50A {Escherichia coli k-12} PDB:
           3ior_A 3iou_A 3iov_A 3iow_A
          Length = 449

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 7   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV 106
                   LL ++      ++   
Sbjct: 67  FGGYAQSGLLAEITPDKAFQDKLY 90


>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
           receptor for activiated protein C-kinase 1,
           beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
           coli}
          Length = 694

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 19/141 (13%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 22  TENTTKYLTLYTDQNQS--VMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDV 76
            E     L ++ + ++    +  +   FE+ TG+K++  +   ++         G   D+
Sbjct: 2   IEEGK--LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDI 59

Query: 77  I-ITKDETSLALNEDLLHKLPAHLIKKNSFV------LKNENKKL-MRISFDTQVLAYST 128
           I    D         LL ++      ++         ++   K +   I+ +   L Y+ 
Sbjct: 60  IFWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNK 119

Query: 129 KRIKIADLPKSVFDLTNAQWK 149
               + + PK+  ++     +
Sbjct: 120 D--LLPNPPKTWEEIPALDKE 138


>1y4c_A Maltose binding protein fused with designed helical protein; de
           novo designed helical protein, maltose binding protein
           fusion, de novo protein; HET: GLC; 1.90A {Escherichia
           coli}
          Length = 494

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 7   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV 106
                   LL ++      ++   
Sbjct: 67  FGGYAQSGLLAEITPDKAFQDKLY 90


>3c9h_A ABC transporter, substrate binding protein; structural genomics,
           MCSG, PSI-2, protein structure initiative; HET: CIT;
           1.90A {Agrobacterium tumefaciens str}
          Length = 355

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 16/180 (8%), Positives = 52/180 (28%), Gaps = 8/180 (4%)

Query: 11  LLLCGFTEAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERT-GVKISPIYTSS------- 62
           L       A S +   + L +Y+  ++ +  P+I  F++    + +      +       
Sbjct: 18  LAQVAVFPALSGKTDAQTLVVYSSLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRI 77

Query: 63  IQRPPITQGSPVDVIITKDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQ 122
           ++     + +      +  +  + L+ D   +     +        N       ++F+  
Sbjct: 78  VKETDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDLAMSARWPAWANWRNTAYALTFEPA 137

Query: 123 VLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIK 182
           V  Y          P +  +  +   +    +     ++    + +         + F  
Sbjct: 138 VFVYHKPSFTTEKPPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRDQEQFGD 197


>3f5f_A Maltose-binding periplasmic protein, heparan sulfate
           2-O-sulfotransferase 1; maltose binding protein, fusion,
           heparan sulfate biosynthesis; HET: GLC A3P; 2.65A
           {Escherichia coli k-12}
          Length = 658

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 15/136 (11%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 7   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66

Query: 83  TSLALNEDLLHKLPAHLIKKNSF-------VLKNENKKLMRISFDTQVLAYSTKRIKIAD 135
                   LL ++      ++         V  N       I+ +   L Y+   +   +
Sbjct: 67  FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--N 124

Query: 136 LPKSVFDLTNAQWKKR 151
            PK+  ++     + +
Sbjct: 125 PPKTWEEIPALDKELK 140


>1mg1_A Protein (HTLV-1 GP21 ectodomain/maltose-binding protein chimera);
           human T cell leukemia virus type 1, envelope protein;
           HET: MAL; 2.50A {Human t-lymphotropic virus 1} SCOP:
           c.94.1.1 h.3.2.1
          Length = 450

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 13/135 (9%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 3   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 62

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV------LKNENKKLMR-ISFDTQVLAYSTKRIKIAD 135
                   LL ++      ++         ++   K +   I+ +   L Y+   +    
Sbjct: 63  FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPP 122

Query: 136 LPKSVFDLTNAQWKK 150
                    + + K 
Sbjct: 123 KTWEEIPALDKELKA 137


>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein,
           metal-binding protein, TAT; 1.70A {Synechocystis SP}
           PDB: 2vp1_A*
          Length = 346

 Score = 35.1 bits (79), Expect = 0.010
 Identities = 32/168 (19%), Positives = 66/168 (39%), Gaps = 10/168 (5%)

Query: 5   TIYTYLLLLCGFTEAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQ 64
           T  T L++      A +   T   + LY+ ++ +    +  +F E   ++ S      I+
Sbjct: 15  TALTALVVANLPRRASAQSRT---INLYSSRHYNTDDALYDAFGEVNLIEAS--AEELIE 69

Query: 65  RPPITQGSP-VDVIITKDETSLALNEDLLHKLP---AHLIKKNSFVLKNENKKLMRISFD 120
           R      +   D++ T D   L   E      P     L ++    L++ +      +  
Sbjct: 70  RIQSEGANSPGDILFTVDAGMLWRAEQAGLFQPVRSGKLNERIPENLRHPDGLWYGFTQR 129

Query: 121 TQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTM 168
            +VL YS  R+  AD   +   L + QW+ ++ + P++  ++  L   
Sbjct: 130 ARVLYYSRDRVNPAD-LSTYEALADPQWRGKILVRPSSNVYNLSLTAS 176


>2zxt_A Maltose-binding periplasmic protein, linker, mitochondrial
           intermembrane space import...; disulfide bond, alpha
           helix, fusion, sugar transport; HET: MAL; 3.00A
           {Escherichia coli}
          Length = 465

 Score = 35.2 bits (80), Expect = 0.010
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 7   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV 106
                   LL ++      ++   
Sbjct: 67  FGGYAQSGLLAEITPDKAFQDKLY 90


>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
           subunit chimera; multifunction macromolecular complex,
           ubiquitin, ATP, conformational change, thioester,
           switch, adenylation, protein turnover, ligase; HET: ATP;
           2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
          Length = 805

 Score = 34.7 bits (79), Expect = 0.013
 Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 15/131 (11%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 11  LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 70

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV------LKNENKKL-MRISFDTQVLAYSTKRIKIAD 135
                   LL ++      ++         ++   K +   I+ +   L Y+   +   +
Sbjct: 71  FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--N 128

Query: 136 LPKSVFDLTNA 146
            PK+  ++   
Sbjct: 129 PPKTWEEIPAL 139


>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
           cooperativity, maltose binding protein, MBP, sugar
           binding, DNA binding protein; 2.10A {Escherichia coli}
           SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
          Length = 421

 Score = 34.5 bits (78), Expect = 0.015
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 7   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV 106
                   LL ++      ++   
Sbjct: 67  FGGYAQSGLLAEITPDKAFQDKLY 90


>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered
           binding protein, antibody mimic, synthetic protein
           interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A*
           3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A* 3g7v_A*
          Length = 461

 Score = 34.6 bits (78), Expect = 0.017
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 5   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 64

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV 106
                   LL ++      ++   
Sbjct: 65  FGGYAQSGLLAEITPDKAFQDKLY 88


>3kjt_A Maltose-binding periplasmic protein; alternate conformation, sugar
           transport, transport, transport protein; 1.50A
           {Escherichia coli k-12} PDB: 3hpi_A 1anf_A* 1dmb_A*
           1ez9_A* 1jw4_A 1jw5_A* 1lls_A 1omp_A 2d21_A 2r6g_E*
           3mbp_A* 4mbp_A* 1fqa_A* 1fqb_A* 1fqc_A* 1fqd_A* 1ezo_A
           1ezp_A 2h25_A 2klf_A ...
          Length = 372

 Score = 34.3 bits (77), Expect = 0.019
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++       + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 9   LVIWINGLFGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFYAHDR 68

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV 106
                   LL ++      ++   
Sbjct: 69  FGGYAQSGLLAEITPDKAFQDKLY 92


>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex,
           mutant K127S, metal binding protein; 1.55A {Xanthomonas
           axonopodis PV} PDB: 2h5y_A
          Length = 253

 Score = 33.8 bits (76), Expect = 0.024
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 15/134 (11%)

Query: 29  LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSSIQ-RPPITQGSPVDVIITKDETSLA 86
           +T++   + +  M     ++E+ TG  +   Y +S      I QG+P DV ++ D   + 
Sbjct: 25  VTVFAAASLKESMDEAATAYEKATGTPVRVSYAASSALARQIEQGAPADVFLSADLEWM- 83

Query: 87  LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146
                        ++++  VL  +   L+  +      A S  R+     P ++      
Sbjct: 84  -----------DYLQQHGLVLPAQRHNLLGNTLVLVAPASSKLRVDPRA-PGAIAKALGE 131

Query: 147 QWKKRLSIAPNNIS 160
             +  +    +  +
Sbjct: 132 NGRLAVGQTASVPA 145


>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein;
           the tungstate ABC transporter, structural genomics, PSI,
           MCSG; 1.80A {Geobacter sulfurreducens}
          Length = 236

 Score = 33.8 bits (76), Expect = 0.030
 Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 12/161 (7%)

Query: 24  NTTKYLTLYT---DQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSPVDVI 77
           N  + L + T    Q+  ++  ++  FE++  VK+  I   +   ++      G    V 
Sbjct: 2   NAEERLKMSTTTSTQDSGLLKVLLPPFEKKNNVKVDVIAVGTGQALKL--GEAGDVDVVF 59

Query: 78  ITKDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYST----KRIKI 133
           +   +       D        ++  +  ++  +N         T   A           I
Sbjct: 60  VHARKLEDKFVADGFGVNRKDVMYNDFVIVGPKNDPAGIAKAKTAAEALKLLATKGATFI 119

Query: 134 ADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNK 174
           +   KS          K   + P    +      M      
Sbjct: 120 SRGDKSGTHTKELDLWKSAGVDPKGNWYVEAGQGMGPVITM 160


>2vgq_A Maltose-binding periplasmic protein, mitochondrial
           antiviral-signaling protein; immune system/transport,
           IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
          Length = 477

 Score = 33.4 bits (75), Expect = 0.032
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 22  LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 81

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV 106
                   LL ++      ++   
Sbjct: 82  FGGYAQSGLLAEITPDKAFQDKLY 105


>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport
           protein; HET: SPD; 1.80A {Escherichia coli} SCOP:
           c.94.1.1 PDB: 1poy_1*
          Length = 325

 Score = 33.5 bits (75), Expect = 0.033
 Identities = 14/132 (10%), Positives = 40/132 (30%), Gaps = 14/132 (10%)

Query: 43  IIHSFEERTGVKISPIYTSS----IQRPPITQGSPVDVIITKDETSLALNE-DLLHKLPA 97
           ++  F + TG+K+      S      +    +    D+++        + +  ++ K+  
Sbjct: 19  LLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDK 78

Query: 98  HLIKKNSFVLKNENKKLMR--------ISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWK 149
             +   S +  +   K             +    +  +   +       S  DL   ++K
Sbjct: 79  SKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKS-VTSWADLWKPEYK 137

Query: 150 KRLSIAPNNISF 161
             L +  +    
Sbjct: 138 GSLLLTDDAREV 149


>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC
           transporter; 1.20A {Azotobacter vinelandii} SCOP:
           c.94.1.1
          Length = 231

 Score = 33.1 bits (74), Expect = 0.037
 Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 21/137 (15%)

Query: 29  LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSS-IQRPPITQGSPVDVIITKDETSLA 86
           L + T  N    +  +   F ++TG  +     SS      I  G+P +V  + DE    
Sbjct: 2   LKVVTATNFLGTLEQLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAPYNVFFSADE---- 57

Query: 87  LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146
                          K+   L N+   L    F   +        K   +      L   
Sbjct: 58  ---------------KSPEKLDNQGFALPGSRFTYAIGKLVLWSAKPGLVDNQGKVLAGN 102

Query: 147 QWKKRLSIAPNNISFHR 163
            W+      P    +  
Sbjct: 103 GWRHIAISNPQIAPYGL 119


>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein,
          N-glycosylation, structural genomics; HET: FLC; 1.60A
          {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A*
          3fj7_A*
          Length = 237

 Score = 33.0 bits (74), Expect = 0.039
 Identities = 10/59 (16%), Positives = 23/59 (38%)

Query: 39 VMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSLALNEDLLHKLPA 97
           +  I + + E+TGVK++  +          +     +    D+++LA+  D       
Sbjct: 14 ALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNV 72


>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
           product-specific receptor; RAGE, AGER, scavenger
           receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
           2e5e_A
          Length = 581

 Score = 33.2 bits (75), Expect = 0.042
 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 13/120 (10%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 7   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV-----LKNENKKLMRI--SFDTQVLAYSTKRIKIAD 135
                   LL ++      ++            N KL+    + +   L Y+   +    
Sbjct: 67  FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPP 126


>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic
           binding protein, ABC transporter, transport protein,
           ligand; HET: CIT; 1.69A {Methanosarcina acetivorans}
           PDB: 3k6u_A* 3k6w_A 3k6x_A
          Length = 354

 Score = 33.1 bits (74), Expect = 0.043
 Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 6/120 (5%)

Query: 21  STENTTKYLTLYTDQN-QSVMLPIIHSFEER-TGVKISPIYTSS--IQRPPITQGSPVDV 76
           ++    + LT++   +       +   FE +  GV +      S    R     G   DV
Sbjct: 37  TSAGEGEVLTVFHAGSLSVPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADV 96

Query: 77  IITKDETSL--ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIA 134
           + + D   +   +  +      A    +      NE+K    I+ D          ++  
Sbjct: 97  LASADYALIPSLMVPEYADWYAAFARNQMILAYTNESKYGDEINTDNWYEILRRPDVRYG 156


>1r6z_P Chimera of maltose-binding periplasmic protein and argonaute 2;
           deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A
           {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 PDB: 1t2r_A
           1t2s_A
          Length = 509

 Score = 32.9 bits (74), Expect = 0.055
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 8   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 67

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV-----LKNENKKLMRISFDTQVLAYSTKRIKIADLP 137
                   LL ++      ++            N KL+      + L+    +  + + P
Sbjct: 68  FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPP 127

Query: 138 KSVFDLTNAQWK 149
           K+  ++     +
Sbjct: 128 KTWEEIPALDKE 139


>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
           phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
          Length = 629

 Score = 32.2 bits (73), Expect = 0.073
 Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 101 KKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNIS 160
           +    ++  E ++L  +   T    Y     K   L     +    + ++ + +  +  +
Sbjct: 144 RTEDIIIPLEKEQLASLKGSTVKSIYRFDDKKNVILSPVYVNYNKVRTEEEM-VKQHGAN 202

Query: 161 FHRLLNTMEQTPNKTVVQDFIK 182
           + RL       P+   V  F++
Sbjct: 203 YFRLTLQDHFRPDDPDVDKFLE 224


>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic
           protein; HIV, antiviral protein; 2.80A {Escherichia
           coli}
          Length = 471

 Score = 32.0 bits (72), Expect = 0.081
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 21  LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 80

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV 106
                   LL ++      ++   
Sbjct: 81  FGGYAQSGLLAEITPDKAFQDKLY 104


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.2 bits (73), Expect = 0.086
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 57/144 (39%)

Query: 32  YTDQ-NQSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSL-ALNE 89
           Y ++ N    LP       +  V+IS +                +++++    SL  LN 
Sbjct: 352 YVNKTNSH--LP-----AGKQ-VEISLV------------NGAKNLVVSGPPQSLYGLN- 390

Query: 90  DLLH----KLPAHL----I----KKNSFVLKNENKKLMRIS--FDTQVLAYSTKRIKIAD 135
             L     K P+ L    I    +K  F     N+ L  ++  F + +L  ++  I   D
Sbjct: 391 --LTLRKAKAPSGLDQSRIPFSERKLKFS----NRFL-PVASPFHSHLLVPASDLIN-KD 442

Query: 136 LPKS------------VFDLTNAQ 147
           L K+            V+D  +  
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGS 466


>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2,
           protein structure initiative, MI center for structural
           genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
          Length = 237

 Score = 31.9 bits (71), Expect = 0.086
 Identities = 17/142 (11%), Positives = 44/142 (30%), Gaps = 5/142 (3%)

Query: 35  QNQSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSL--ALNEDLL 92
            +  ++  ++  FE+ TG K+  I   + +   + +   VD+++T    +    + +   
Sbjct: 16  YHSGLLDYLLPQFEKDTGYKVDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYG 75

Query: 93  HKLPAHLIKKNSFVLKNENKKLMRISFDTQ---VLAYSTKRIKIADLPKSVFDLTNAQWK 149
                 +      V    +   ++             +     I+    S        + 
Sbjct: 76  VLPRKLMYNDFVIVGPKADPAKIKDDESVLDVFKEIANKNATFISRGDDSGTHKKEMGFW 135

Query: 150 KRLSIAPNNISFHRLLNTMEQT 171
            +  I PN   +  +   M  T
Sbjct: 136 AQTKIEPNFGGYRSVGQGMGPT 157


>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding
          protein, thermophilic protein, periplasmic binding
          protein; HET: MLR; 1.95A {Thermus thermophilus HB27}
          Length = 386

 Score = 31.8 bits (70), Expect = 0.10
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 30 TLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQ-----RPPITQGSPVDVIITKDETS 84
          T +       +     +FE  +G K+  +     +          QG   D+++T     
Sbjct: 7  THFGGPELEWLKEQARTFERTSGTKVEVVEVPFAEIKQKFILGAPQGQAADLVVTVPHDW 66

Query: 85 LA 86
          + 
Sbjct: 67 VG 68


>2gha_A Maltose ABC transporter, periplasmic maltose- binding protein;
          periplasmic binding protein, MBP, maltotriose, sugar
          binding protein; HET: MLR; 1.60A {Thermotoga maritima
          MSB8} PDB: 2ghb_A 2fnc_A*
          Length = 382

 Score = 31.7 bits (70), Expect = 0.13
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 29 LTLYTDQNQS-VMLPIIHSFEERTGVKISPIYTSSIQ-----RPPITQGSPVDVI-ITKD 81
          LT++  + Q  ++  +   F+ + GV++   Y +             +G   D+I    D
Sbjct: 5  LTIWCSEKQVDILQKLGEEFKAKYGVEVEVQYVNFQDIKSKFLTAAPEGQGADIIVGAHD 64

Query: 82 ETSLALNEDLLHKLP 96
                   L+  +P
Sbjct: 65 WVGELAVNGLIEPIP 79


>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP
           fusion, AHA1/BPI domain-like, super roll, sugar T
           transport, allergen; HET: GLC; 2.35A {Escherichia coli}
           PDB: 1mg1_A*
          Length = 568

 Score = 30.8 bits (69), Expect = 0.19
 Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 19/135 (14%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 7   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66

Query: 83  TSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMR---------ISFDTQVLAYSTKRIKI 133
                   LL ++      ++           +R         I+ +   L Y+   +  
Sbjct: 67  FGGYAQSGLLAEITPAAAFQDKLY--PFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN 124

Query: 134 ADLPKSVFDLTNAQW 148
              PK+  ++     
Sbjct: 125 P--PKTWEEIPALDK 137


>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein,
          ABC transporter, transport protein; HET: TPS; 2.25A
          {Escherichia coli}
          Length = 330

 Score = 30.1 bits (66), Expect = 0.32
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 29 LTLYT-DQNQSVMLP---IIHSFEERTGVKISPIYTSS----IQRPPITQGSP-VDVIIT 79
          LT+YT D   +   P   +  +FE     ++  +        + R  +   +   DV++ 
Sbjct: 25 LTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLG 84

Query: 80 KDETSL 85
           D   L
Sbjct: 85 LDNNLL 90


>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
           protein R and maltose...; novel fold for DNA binding;
           HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
           c.94.1.1
          Length = 487

 Score = 29.8 bits (66), Expect = 0.45
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82
           L ++   D+  + +  +   FE+ TG+K++  +   ++         G   D+I    D 
Sbjct: 7   LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV 106
                   LL ++      ++   
Sbjct: 67  FGGYAQSGLLAEITPDKAFQDKLY 90


>1amf_A Molybdate transport protein MODA; periplasmic, binding protein;
           1.75A {Escherichia coli} SCOP: c.94.1.1 PDB: 1wod_A
          Length = 233

 Score = 29.2 bits (64), Expect = 0.55
 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 18/145 (12%)

Query: 29  LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSS-IQRPPITQGSPVDVIITKDETSLA 86
           +T++   +  + M  I   F++  GV +   + SS      I  G+P D+ I+      A
Sbjct: 5   ITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFIS------A 58

Query: 87  LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146
             + + + +    I   +            +  ++ V+      ++      S  + T+ 
Sbjct: 59  DQKWMDYAVDKKAIDTATRQ---------TLLGNSLVVVAPKASVQKDFTIDSKTNWTSL 109

Query: 147 QWKKRLSIA-PNNISFHRLLNTMEQ 170
               RL++  P ++          Q
Sbjct: 110 LNGGRLAVGDPEHVPAGIYAKEALQ 134


>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic
          binding protein fold, structural genomics, PSI-2; HET:
          GTT CIT; 2.41A {Wolinella succinogenes}
          Length = 242

 Score = 29.3 bits (64), Expect = 0.55
 Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 29 LTLYT---DQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSPVDVII 78
          L + T     N  ++  +  ++++ TGV +  +   +   ++           V +
Sbjct: 7  LRMATTTSTDNTGLLDVLAPAYKKDTGVDLKWVAVGTGNALKL--GENCDVDVVFV 60


>2zyo_A Solute-binding protein; open form, sugar binding protein; HET:
          GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A*
          2zym_A* 2zyn_A* 2dfz_A*
          Length = 397

 Score = 29.5 bits (64), Expect = 0.56
 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 14 CG-----FTEAFSTENTTKYLTLYTDQNQSVMLP----IIHSFEERTGVKISPIYTSSIQ 64
          CG     + +A  +E     L ++ + +  V L         F ++TG+++  +  + ++
Sbjct: 1  CGPKRDPYAKAGKSEGKPDKLVVWENADDGVQLNNTKKWAGEFTKKTGIQVEVVPVALLK 60

Query: 65 -----RPPITQGSPVDVII 78
                     G   D++ 
Sbjct: 61 QQEKLTLDGPAGKGADLVT 79


>3ne0_A Resuscitation promoting factor interacting protei; cell WALL,
           peptidoglycan, hydrolase; 1.00A {Mycobacterium
           tuberculosis} PDB: 2xiv_A*
          Length = 214

 Score = 29.3 bits (65), Expect = 0.57
 Identities = 5/33 (15%), Positives = 16/33 (48%), Gaps = 5/33 (15%)

Query: 31  LYTDQNQSVMLPIIHSFEERTGVKISPIYTSSI 63
           +Y    Q     ++ + +    V+++P+ T+ +
Sbjct: 177 IYLGNGQ-----MLEAPDVGLKVRVAPVRTAGM 204


>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine
           binding protein (POTF); 2.20A {Escherichia coli} SCOP:
           c.94.1.1
          Length = 344

 Score = 29.0 bits (63), Expect = 0.70
 Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 32  YTDQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSPVDVI-ITKDETSLAL 87
           Y   +       + +FE+ TG+K+      S   ++   +   +  D++  +       L
Sbjct: 14  YIAPD------TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQL 67

Query: 88  NEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQ 122
              +   L    + +   +     K + +   D +
Sbjct: 68  TAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNK 102


>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP:
          c.94.1.1
          Length = 310

 Score = 29.1 bits (64), Expect = 0.78
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 7/58 (12%)

Query: 31 LYTDQNQSVMLPIIHSFEERTGVKISPIYT---SSIQRPPITQGSPVDVIITKDETSL 85
          LY   N++        +++ TG  +    +   S  Q   +  G   D +       +
Sbjct: 16 LYEQYNKA----FSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDV 69


>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 701

 Score = 28.8 bits (64), Expect = 0.81
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 12/69 (17%)

Query: 101 KKN---SFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIA-- 155
           KKN   +   K E K L+  S   ++  Y      +  +P+S FD    ++K  L     
Sbjct: 422 KKNVKINIFEKEEGKNLLGPSILNEIYVY---DGNVIGIPES-FDGVKEEFKDFLEKGKS 477

Query: 156 ---PNNISF 161
                 I +
Sbjct: 478 EGVATGIRY 486


>2hhv_A DNA polymerase I; DNA replication, klenow fragment, protein- DNA
           complex, O6-methyl-guanine, transferase/DNA complex;
           HET: DNA 6OG SUC; 1.55A {Geobacillus stearothermophilus}
           SCOP: c.55.3.5 e.8.1.1 PDB: 2hhs_A* 2hht_A* 2hhu_A*
           2hhq_A* 2hhx_A* 2hw3_A* 1nk4_A* 1l3t_A* 1l3u_A* 1l3v_A*
           1l5u_A* 1njw_A* 1l3s_A* 1njy_A* 1njz_A* 1nk0_A* 1njx_A*
           1nk5_A* 1nk6_A* 1nk7_A* ...
          Length = 580

 Score = 28.0 bits (61), Expect = 1.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 89  EDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAY 126
            D   K      K+ +  LK +  +L  +SFD  + AY
Sbjct: 66  GDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAY 103


>2pt0_A MYO-inositol hexaphosphate phosphohydrolase; PTP, protein tyrosine
           phosphatase, phytase, P-loop, cysteine-sulfonic acid,
           oxidized thiol.; 1.70A {Selenomonas ruminantium} SCOP:
           c.45.1.4 PDB: 2psz_A 3d1h_A 3d1o_A 3d1q_A 1u24_A 1u25_A*
           1u26_A* 2b4o_A 2b4p_A 2b4u_A
          Length = 340

 Score = 27.2 bits (60), Expect = 2.3
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 96  PAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIA 155
            A+L K     L +E  +L      T  +A   K  K+ +  +    +   Q ++ ++ A
Sbjct: 148 WANLGKSQHEALADERHRLHAALHKTVYIAPLGKH-KLPEGGEVR-RVQKVQTEQEVAEA 205

Query: 156 PNNISFHRLLNTMEQTPNKTVVQDFIKNI 184
              + + R+  T    P    +  F+   
Sbjct: 206 -AGMRYFRIAATDHVWPTPENIDRFLAFY 233


>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus
           musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB:
           1kdh_A* 1kej_A*
          Length = 381

 Score = 26.2 bits (57), Expect = 5.3
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 74  VDVIITKDETSLALNEDLLHKLPAHLIKKN----SFVLKNENKKLMRISFDTQVLAYSTK 129
           VD +IT  E +    + LLHK+     ++       +L++  +K  + S     L +  K
Sbjct: 215 VDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQK 274

Query: 130 RIKIADLPKS 139
              I  L   
Sbjct: 275 CFLILKLDHG 284


>3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein,
           structural genomics, joint center for structural
           genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus
           atcc 10987}
          Length = 311

 Score = 25.9 bits (56), Expect = 5.8
 Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 5/36 (13%)

Query: 31  LYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRP 66
           +Y          +IHS      V+I P+ T      
Sbjct: 272 MYIGDGN-----MIHSPRAERSVEIIPLNTPGYIEE 302


>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn
           binding, metal-binding, oxidoreductase, zinc; NMR
           {Methanothermobacterthermautotrophicus str}
          Length = 151

 Score = 25.6 bits (56), Expect = 8.2
 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 6/31 (19%)

Query: 129 KRIKIADLPKSVFD------LTNAQWKKRLS 153
            RI I  + K+  +      L++ +W++ L 
Sbjct: 3   DRIPIFSVAKNRVEMVERIELSDDEWREILD 33


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0514    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,517,774
Number of extensions: 63753
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 55
Length of query: 195
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 108
Effective length of database: 3,584,002
Effective search space: 387072216
Effective search space used: 387072216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)