RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780563|ref|YP_003064976.1| extracellular solute-binding protein [Candidatus Liberibacter asiaticus str. psy62] (195 letters) >1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A* Length = 312 Score = 66.6 bits (161), Expect = 3e-12 Identities = 37/171 (21%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Query: 23 ENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG--SPVDVII 78 E+ + +Y Q+++++ + F + TG+K++ + + +G SP DV + Sbjct: 1 ESNDSGIVVYNAQHENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFL 60 Query: 79 TKDETSL--ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADL 136 T++ ++ N L L A + + + E+ + I+ + V Y+ ++I A+L Sbjct: 61 TENSPAMVLVDNAKLFAPLDAVTQAQVAQEYRPEHGRWTGIAARSTVFVYNPEKISEAEL 120 Query: 137 PKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187 PKS+ DL +WK R + +P+ F +++ M + + +++K + N Sbjct: 121 PKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKGEKATLEWLKAMKTN 171 >3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} PDB: 1y4t_A Length = 322 Score = 56.5 bits (135), Expect = 4e-09 Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 7/147 (4%) Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRPP----ITQGSPVDVIITKDETS 84 L +Y+ ++ + II FEE+TG+K++ + + SP D+ IT D ++ Sbjct: 4 LNIYSARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITADISN 63 Query: 85 L--ALNEDLLHKL-PAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVF 141 L A N LL + +L + L++++K+ I+ +++AY+ K+ Sbjct: 64 LTEAKNLGLLSPVSSKYLEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYE 123 Query: 142 DLTNAQWKKRLSIAPNNISFHRLLNTM 168 DL A++K + + + + L Sbjct: 124 DLAKAEFKGEIVMRSATAPYSKTLLAS 150 >1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A Length = 320 Score = 55.0 bits (131), Expect = 1e-08 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 7/166 (4%) Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG-SPVDVIITKDETSL 85 + +Y+ + ++ P++ +FE+ TG+K++ I+ + R SP DV++T D + + Sbjct: 4 VNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRV 63 Query: 86 ALNED---LLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFD 142 + L K ++ N + ++ +V+ S R+ D Sbjct: 64 MEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLD 123 Query: 143 LTNAQWKKRLSIAP-NNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187 L ++K ++ + N L M + + F++ + AN Sbjct: 124 LAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKAN 169 >1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 1qvs_A 2o6a_A 2o68_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A Length = 309 Score = 54.7 bits (130), Expect = 1e-08 Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 8/167 (4%) Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG--SPVDVIITKDETS 84 +T+Y Q + + +FE+ TG+K++ S + +G +P DV T+ + Sbjct: 2 ITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTAT 61 Query: 85 L--ALNEDLLHKLPAHLIKK--NSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSV 140 LL + I++ V K + +S ++V+ Y ++ D+ KSV Sbjct: 62 FADLSEAGLLAPISEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKSV 121 Query: 141 FDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187 D +WK ++ + +F + + + V +++K + N Sbjct: 122 LDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKEN 168 >1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A Length = 323 Score = 46.0 bits (107), Expect = 6e-06 Identities = 22/143 (15%), Positives = 52/143 (36%), Gaps = 3/143 (2%) Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQGSP-VDVIITKDETSL 85 ++LYT + ++ P++ +F + +G+K++ ++ ++R DV++T D +L Sbjct: 8 VSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNL 67 Query: 86 ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTN 145 + +S V N + + DL + Sbjct: 68 IDLVNGGVTQKIQSQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKLDSFRYGDLAD 127 Query: 146 AQWKKRLSIAPNNISFHRLLNTM 168 +WK ++ I ++ L Sbjct: 128 PKWKGKVCIRSGQHPYNTALVAA 150 >2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, periplasmic binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A Length = 334 Score = 43.1 bits (100), Expect = 4e-05 Identities = 28/167 (16%), Positives = 69/167 (41%), Gaps = 9/167 (5%) Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSP-VDVIITKDETS 84 + LY+ ++ + + F TG+K++ I + ++R + DV++T D Sbjct: 21 INLYSSRHYNTDNELYAKFTAETGIKVNLIEGKADELLERIKSEGANSPADVLLTVDLAR 80 Query: 85 LALNEDLLHKLPAHLIKKNSFV---LKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVF 141 L E+ P + V L++ + + +V+ Y+ ++K + + Sbjct: 81 LWRAEEDGIFQPVQSEILETNVPEYLRSPDGMWFGFTKRARVIMYNKGKVKPEE-LSTYE 139 Query: 142 DLTNAQWKKRLSIAPNNISF-HRLLNTMEQTPNKTVVQDFIKNITAN 187 +L + +WK R+ I ++ + L+ ++ + + K +N Sbjct: 140 ELADPKWKGRVIIRSSSNEYNQSLVASLVVADGEESTLAWAKGFVSN 186 >2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A* Length = 416 Score = 42.9 bits (100), Expect = 5e-05 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 20/166 (12%) Query: 11 LLLCGFTEAFST-----ENTTKYLTLYTDQNQS-VMLPIIHSFEERTGVKISPIYTSSIQ 64 L+ G A + K LT+Y D+ + + ++E+ GVK++ ++ Sbjct: 14 LVPRGSHMASDKPADSGSSEVKELTVYVDEGYKSYIEEVAKAYEKEAGVKVTLKTGDALG 73 Query: 65 RPP-----ITQGSPVDVIITK-DETSLALNEDLLHKLPAHLIKKNSFVLKNE----NKKL 114 G+ DV++ D ++ L ++ K K+ N K+ Sbjct: 74 GLDKLSLDNQNGNVPDVMMAPYDRVGSLGSDGQLSEVKLSDGAKTDDTTKSLVTAANGKV 133 Query: 115 MRI--SFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNN 158 ++ V+ Y+ +K A PK+ DL N + + A + Sbjct: 134 YGAPAVIESLVMYYNKDLVKDA--PKTFADLENLAKDSKYAFAGED 177 >3h3g_A Fusion protein of maltose-binding periplasmic domain and human parathyroid hormone...; GPCR, extracellular domain, PTHRP, PTH, PThr1, periplasm, sugar transport, transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A* 3ehs_A* 3ehu_A* 3eht_A* Length = 539 Score = 39.1 bits (90), Expect = 7e-04 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 15/134 (11%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 9 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 68 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV-----LKNENKKLMRI--SFDTQVLAYSTKRIKIAD 135 LL ++ ++ N KL+ + + L Y+ + Sbjct: 69 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNP- 127 Query: 136 LPKSVFDLTNAQWK 149 PK+ ++ + Sbjct: 128 -PKTWEEIPALDKE 140 >3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD, sugar transport, transport, apoptosis, cytoplasm, disease mutation; 3.50A {Escherichia coli k-12} PDB: 3ior_A 3iou_A 3iov_A 3iow_A Length = 449 Score = 37.7 bits (86), Expect = 0.002 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106 LL ++ ++ Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLY 90 >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 Score = 37.1 bits (85), Expect = 0.003 Identities = 19/141 (13%), Positives = 50/141 (35%), Gaps = 17/141 (12%) Query: 22 TENTTKYLTLYTDQNQS--VMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDV 76 E L ++ + ++ + + FE+ TG+K++ + ++ G D+ Sbjct: 2 IEEGK--LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDI 59 Query: 77 I-ITKDETSLALNEDLLHKLPAHLIKKNSFV------LKNENKKL-MRISFDTQVLAYST 128 I D LL ++ ++ ++ K + I+ + L Y+ Sbjct: 60 IFWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNK 119 Query: 129 KRIKIADLPKSVFDLTNAQWK 149 + + PK+ ++ + Sbjct: 120 D--LLPNPPKTWEEIPALDKE 138 >1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli} Length = 494 Score = 36.9 bits (84), Expect = 0.003 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106 LL ++ ++ Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLY 90 >3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Length = 355 Score = 36.7 bits (83), Expect = 0.003 Identities = 16/180 (8%), Positives = 52/180 (28%), Gaps = 8/180 (4%) Query: 11 LLLCGFTEAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERT-GVKISPIYTSS------- 62 L A S + + L +Y+ ++ + P+I F++ + + + Sbjct: 18 LAQVAVFPALSGKTDAQTLVVYSSLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRI 77 Query: 63 IQRPPITQGSPVDVIITKDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQ 122 ++ + + + + + L+ D + + N ++F+ Sbjct: 78 VKETDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDLAMSARWPAWANWRNTAYALTFEPA 137 Query: 123 VLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIK 182 V Y P + + + + + ++ + + + F Sbjct: 138 VFVYHKPSFTTEKPPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRDQEQFGD 197 >3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12} Length = 658 Score = 36.3 bits (83), Expect = 0.004 Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 15/136 (11%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66 Query: 83 TSLALNEDLLHKLPAHLIKKNSF-------VLKNENKKLMRISFDTQVLAYSTKRIKIAD 135 LL ++ ++ V N I+ + L Y+ + + Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--N 124 Query: 136 LPKSVFDLTNAQWKKR 151 PK+ ++ + + Sbjct: 125 PPKTWEEIPALDKELK 140 >1mg1_A Protein (HTLV-1 GP21 ectodomain/maltose-binding protein chimera); human T cell leukemia virus type 1, envelope protein; HET: MAL; 2.50A {Human t-lymphotropic virus 1} SCOP: c.94.1.1 h.3.2.1 Length = 450 Score = 36.4 bits (83), Expect = 0.004 Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 13/135 (9%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 3 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 62 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV------LKNENKKLMR-ISFDTQVLAYSTKRIKIAD 135 LL ++ ++ ++ K + I+ + L Y+ + Sbjct: 63 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPP 122 Query: 136 LPKSVFDLTNAQWKK 150 + + K Sbjct: 123 KTWEEIPALDKELKA 137 >2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* Length = 346 Score = 35.1 bits (79), Expect = 0.010 Identities = 32/168 (19%), Positives = 66/168 (39%), Gaps = 10/168 (5%) Query: 5 TIYTYLLLLCGFTEAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQ 64 T T L++ A + T + LY+ ++ + + +F E ++ S I+ Sbjct: 15 TALTALVVANLPRRASAQSRT---INLYSSRHYNTDDALYDAFGEVNLIEAS--AEELIE 69 Query: 65 RPPITQGSP-VDVIITKDETSLALNEDLLHKLP---AHLIKKNSFVLKNENKKLMRISFD 120 R + D++ T D L E P L ++ L++ + + Sbjct: 70 RIQSEGANSPGDILFTVDAGMLWRAEQAGLFQPVRSGKLNERIPENLRHPDGLWYGFTQR 129 Query: 121 TQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTM 168 +VL YS R+ AD + L + QW+ ++ + P++ ++ L Sbjct: 130 ARVLYYSRDRVNPAD-LSTYEALADPQWRGKILVRPSSNVYNLSLTAS 176 >2zxt_A Maltose-binding periplasmic protein, linker, mitochondrial intermembrane space import...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} Length = 465 Score = 35.2 bits (80), Expect = 0.010 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106 LL ++ ++ Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLY 90 >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805 Score = 34.7 bits (79), Expect = 0.013 Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 15/131 (11%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 11 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 70 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV------LKNENKKL-MRISFDTQVLAYSTKRIKIAD 135 LL ++ ++ ++ K + I+ + L Y+ + + Sbjct: 71 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--N 128 Query: 136 LPKSVFDLTNA 146 PK+ ++ Sbjct: 129 PPKTWEEIPAL 139 >1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Length = 421 Score = 34.5 bits (78), Expect = 0.015 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106 LL ++ ++ Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLY 90 >3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A* 3g7v_A* Length = 461 Score = 34.6 bits (78), Expect = 0.017 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 5 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 64 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106 LL ++ ++ Sbjct: 65 FGGYAQSGLLAEITPDKAFQDKLY 88 >3kjt_A Maltose-binding periplasmic protein; alternate conformation, sugar transport, transport, transport protein; 1.50A {Escherichia coli k-12} PDB: 3hpi_A 1anf_A* 1dmb_A* 1ez9_A* 1jw4_A 1jw5_A* 1lls_A 1omp_A 2d21_A 2r6g_E* 3mbp_A* 4mbp_A* 1fqa_A* 1fqb_A* 1fqc_A* 1fqd_A* 1ezo_A 1ezp_A 2h25_A 2klf_A ... Length = 372 Score = 34.3 bits (77), Expect = 0.019 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 6/84 (7%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 9 LVIWINGLFGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFYAHDR 68 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106 LL ++ ++ Sbjct: 69 FGGYAQSGLLAEITPDKAFQDKLY 92 >3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A Length = 253 Score = 33.8 bits (76), Expect = 0.024 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 15/134 (11%) Query: 29 LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSSIQ-RPPITQGSPVDVIITKDETSLA 86 +T++ + + M ++E+ TG + Y +S I QG+P DV ++ D + Sbjct: 25 VTVFAAASLKESMDEAATAYEKATGTPVRVSYAASSALARQIEQGAPADVFLSADLEWM- 83 Query: 87 LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146 ++++ VL + L+ + A S R+ P ++ Sbjct: 84 -----------DYLQQHGLVLPAQRHNLLGNTLVLVAPASSKLRVDPRA-PGAIAKALGE 131 Query: 147 QWKKRLSIAPNNIS 160 + + + + Sbjct: 132 NGRLAVGQTASVPA 145 >3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens} Length = 236 Score = 33.8 bits (76), Expect = 0.030 Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 12/161 (7%) Query: 24 NTTKYLTLYT---DQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSPVDVI 77 N + L + T Q+ ++ ++ FE++ VK+ I + ++ G V Sbjct: 2 NAEERLKMSTTTSTQDSGLLKVLLPPFEKKNNVKVDVIAVGTGQALKL--GEAGDVDVVF 59 Query: 78 ITKDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYST----KRIKI 133 + + D ++ + ++ +N T A I Sbjct: 60 VHARKLEDKFVADGFGVNRKDVMYNDFVIVGPKNDPAGIAKAKTAAEALKLLATKGATFI 119 Query: 134 ADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNK 174 + KS K + P + M Sbjct: 120 SRGDKSGTHTKELDLWKSAGVDPKGNWYVEAGQGMGPVITM 160 >2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli} Length = 477 Score = 33.4 bits (75), Expect = 0.032 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 22 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 81 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106 LL ++ ++ Sbjct: 82 FGGYAQSGLLAEITPDKAFQDKLY 105 >1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Length = 325 Score = 33.5 bits (75), Expect = 0.033 Identities = 14/132 (10%), Positives = 40/132 (30%), Gaps = 14/132 (10%) Query: 43 IIHSFEERTGVKISPIYTSS----IQRPPITQGSPVDVIITKDETSLALNE-DLLHKLPA 97 ++ F + TG+K+ S + + D+++ + + ++ K+ Sbjct: 19 LLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDK 78 Query: 98 HLIKKNSFVLKNENKKLMR--------ISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWK 149 + S + + K + + + + S DL ++K Sbjct: 79 SKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKS-VTSWADLWKPEYK 137 Query: 150 KRLSIAPNNISF 161 L + + Sbjct: 138 GSLLLTDDAREV 149 >1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1 Length = 231 Score = 33.1 bits (74), Expect = 0.037 Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 21/137 (15%) Query: 29 LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSS-IQRPPITQGSPVDVIITKDETSLA 86 L + T N + + F ++TG + SS I G+P +V + DE Sbjct: 2 LKVVTATNFLGTLEQLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAPYNVFFSADE---- 57 Query: 87 LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146 K+ L N+ L F + K + L Sbjct: 58 ---------------KSPEKLDNQGFALPGSRFTYAIGKLVLWSAKPGLVDNQGKVLAGN 102 Query: 147 QWKKRLSIAPNNISFHR 163 W+ P + Sbjct: 103 GWRHIAISNPQIAPYGL 119 >2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A* Length = 237 Score = 33.0 bits (74), Expect = 0.039 Identities = 10/59 (16%), Positives = 23/59 (38%) Query: 39 VMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSLALNEDLLHKLPA 97 + I + + E+TGVK++ + + + D+++LA+ D Sbjct: 14 ALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNV 72 >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A 2e5e_A Length = 581 Score = 33.2 bits (75), Expect = 0.042 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 13/120 (10%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV-----LKNENKKLMRI--SFDTQVLAYSTKRIKIAD 135 LL ++ ++ N KL+ + + L Y+ + Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPP 126 >3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A Length = 354 Score = 33.1 bits (74), Expect = 0.043 Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 6/120 (5%) Query: 21 STENTTKYLTLYTDQN-QSVMLPIIHSFEER-TGVKISPIYTSS--IQRPPITQGSPVDV 76 ++ + LT++ + + FE + GV + S R G DV Sbjct: 37 TSAGEGEVLTVFHAGSLSVPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADV 96 Query: 77 IITKDETSL--ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIA 134 + + D + + + A + NE+K I+ D ++ Sbjct: 97 LASADYALIPSLMVPEYADWYAAFARNQMILAYTNESKYGDEINTDNWYEILRRPDVRYG 156 >1r6z_P Chimera of maltose-binding periplasmic protein and argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 PDB: 1t2r_A 1t2s_A Length = 509 Score = 32.9 bits (74), Expect = 0.055 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 11/132 (8%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 8 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 67 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV-----LKNENKKLMRISFDTQVLAYSTKRIKIADLP 137 LL ++ ++ N KL+ + L+ + + + P Sbjct: 68 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPP 127 Query: 138 KSVFDLTNAQWK 149 K+ ++ + Sbjct: 128 KTWEEIPALDKE 139 >3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol phosphatase, hydrolase; 2.30A {Mitsuokella multacida} Length = 629 Score = 32.2 bits (73), Expect = 0.073 Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 1/82 (1%) Query: 101 KKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNIS 160 + ++ E ++L + T Y K L + + ++ + + + + Sbjct: 144 RTEDIIIPLEKEQLASLKGSTVKSIYRFDDKKNVILSPVYVNYNKVRTEEEM-VKQHGAN 202 Query: 161 FHRLLNTMEQTPNKTVVQDFIK 182 + RL P+ V F++ Sbjct: 203 YFRLTLQDHFRPDDPDVDKFLE 224 >3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Length = 471 Score = 32.0 bits (72), Expect = 0.081 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 21 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 80 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106 LL ++ ++ Sbjct: 81 FGGYAQSGLLAEITPDKAFQDKLY 104 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 32.2 bits (73), Expect = 0.086 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 57/144 (39%) Query: 32 YTDQ-NQSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSL-ALNE 89 Y ++ N LP + V+IS + +++++ SL LN Sbjct: 352 YVNKTNSH--LP-----AGKQ-VEISLV------------NGAKNLVVSGPPQSLYGLN- 390 Query: 90 DLLH----KLPAHL----I----KKNSFVLKNENKKLMRIS--FDTQVLAYSTKRIKIAD 135 L K P+ L I +K F N+ L ++ F + +L ++ I D Sbjct: 391 --LTLRKAKAPSGLDQSRIPFSERKLKFS----NRFL-PVASPFHSHLLVPASDLIN-KD 442 Query: 136 LPKS------------VFDLTNAQ 147 L K+ V+D + Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGS 466 >3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus} Length = 237 Score = 31.9 bits (71), Expect = 0.086 Identities = 17/142 (11%), Positives = 44/142 (30%), Gaps = 5/142 (3%) Query: 35 QNQSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSL--ALNEDLL 92 + ++ ++ FE+ TG K+ I + + + + VD+++T + + + Sbjct: 16 YHSGLLDYLLPQFEKDTGYKVDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYG 75 Query: 93 HKLPAHLIKKNSFVLKNENKKLMRISFDTQ---VLAYSTKRIKIADLPKSVFDLTNAQWK 149 + V + ++ + I+ S + Sbjct: 76 VLPRKLMYNDFVIVGPKADPAKIKDDESVLDVFKEIANKNATFISRGDDSGTHKKEMGFW 135 Query: 150 KRLSIAPNNISFHRLLNTMEQT 171 + I PN + + M T Sbjct: 136 AQTKIEPNFGGYRSVGQGMGPT 157 >2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermophilic protein, periplasmic binding protein; HET: MLR; 1.95A {Thermus thermophilus HB27} Length = 386 Score = 31.8 bits (70), Expect = 0.10 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 5/62 (8%) Query: 30 TLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQ-----RPPITQGSPVDVIITKDETS 84 T + + +FE +G K+ + + QG D+++T Sbjct: 7 THFGGPELEWLKEQARTFERTSGTKVEVVEVPFAEIKQKFILGAPQGQAADLVVTVPHDW 66 Query: 85 LA 86 + Sbjct: 67 VG 68 >2gha_A Maltose ABC transporter, periplasmic maltose- binding protein; periplasmic binding protein, MBP, maltotriose, sugar binding protein; HET: MLR; 1.60A {Thermotoga maritima MSB8} PDB: 2ghb_A 2fnc_A* Length = 382 Score = 31.7 bits (70), Expect = 0.13 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 7/75 (9%) Query: 29 LTLYTDQNQS-VMLPIIHSFEERTGVKISPIYTSSIQ-----RPPITQGSPVDVI-ITKD 81 LT++ + Q ++ + F+ + GV++ Y + +G D+I D Sbjct: 5 LTIWCSEKQVDILQKLGEEFKAKYGVEVEVQYVNFQDIKSKFLTAAPEGQGADIIVGAHD 64 Query: 82 ETSLALNEDLLHKLP 96 L+ +P Sbjct: 65 WVGELAVNGLIEPIP 79 >3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli} PDB: 1mg1_A* Length = 568 Score = 30.8 bits (69), Expect = 0.19 Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 19/135 (14%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66 Query: 83 TSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMR---------ISFDTQVLAYSTKRIKI 133 LL ++ ++ +R I+ + L Y+ + Sbjct: 67 FGGYAQSGLLAEITPAAAFQDKLY--PFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN 124 Query: 134 ADLPKSVFDLTNAQW 148 PK+ ++ Sbjct: 125 P--PKTWEEIPALDK 137 >2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli} Length = 330 Score = 30.1 bits (66), Expect = 0.32 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%) Query: 29 LTLYT-DQNQSVMLP---IIHSFEERTGVKISPIYTSS----IQRPPITQGSP-VDVIIT 79 LT+YT D + P + +FE ++ + + R + + DV++ Sbjct: 25 LTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLG 84 Query: 80 KDETSL 85 D L Sbjct: 85 LDNNLL 90 >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 Length = 487 Score = 29.8 bits (66), Expect = 0.45 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82 L ++ D+ + + + FE+ TG+K++ + ++ G D+I D Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106 LL ++ ++ Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLY 90 >1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} SCOP: c.94.1.1 PDB: 1wod_A Length = 233 Score = 29.2 bits (64), Expect = 0.55 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 18/145 (12%) Query: 29 LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSS-IQRPPITQGSPVDVIITKDETSLA 86 +T++ + + M I F++ GV + + SS I G+P D+ I+ A Sbjct: 5 ITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFIS------A 58 Query: 87 LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146 + + + + I + + ++ V+ ++ S + T+ Sbjct: 59 DQKWMDYAVDKKAIDTATRQ---------TLLGNSLVVVAPKASVQKDFTIDSKTNWTSL 109 Query: 147 QWKKRLSIA-PNNISFHRLLNTMEQ 170 RL++ P ++ Q Sbjct: 110 LNGGRLAVGDPEHVPAGIYAKEALQ 134 >3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, structural genomics, PSI-2; HET: GTT CIT; 2.41A {Wolinella succinogenes} Length = 242 Score = 29.3 bits (64), Expect = 0.55 Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 8/56 (14%) Query: 29 LTLYT---DQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSPVDVII 78 L + T N ++ + ++++ TGV + + + ++ V + Sbjct: 7 LRMATTTSTDNTGLLDVLAPAYKKDTGVDLKWVAVGTGNALKL--GENCDVDVVFV 60 >2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* Length = 397 Score = 29.5 bits (64), Expect = 0.56 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 14/79 (17%) Query: 14 CG-----FTEAFSTENTTKYLTLYTDQNQSVMLP----IIHSFEERTGVKISPIYTSSIQ 64 CG + +A +E L ++ + + V L F ++TG+++ + + ++ Sbjct: 1 CGPKRDPYAKAGKSEGKPDKLVVWENADDGVQLNNTKKWAGEFTKKTGIQVEVVPVALLK 60 Query: 65 -----RPPITQGSPVDVII 78 G D++ Sbjct: 61 QQEKLTLDGPAGKGADLVT 79 >3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 2xiv_A* Length = 214 Score = 29.3 bits (65), Expect = 0.57 Identities = 5/33 (15%), Positives = 16/33 (48%), Gaps = 5/33 (15%) Query: 31 LYTDQNQSVMLPIIHSFEERTGVKISPIYTSSI 63 +Y Q ++ + + V+++P+ T+ + Sbjct: 177 IYLGNGQ-----MLEAPDVGLKVRVAPVRTAGM 204 >1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1 Length = 344 Score = 29.0 bits (63), Expect = 0.70 Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 10/95 (10%) Query: 32 YTDQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSPVDVI-ITKDETSLAL 87 Y + + +FE+ TG+K+ S ++ + + D++ + L Sbjct: 14 YIAPD------TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQL 67 Query: 88 NEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQ 122 + L + + + K + + D + Sbjct: 68 TAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNK 102 >1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1 Length = 310 Score = 29.1 bits (64), Expect = 0.78 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 7/58 (12%) Query: 31 LYTDQNQSVMLPIIHSFEERTGVKISPIYT---SSIQRPPITQGSPVDVIITKDETSL 85 LY N++ +++ TG + + S Q + G D + + Sbjct: 16 LYEQYNKA----FSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDV 69 >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 701 Score = 28.8 bits (64), Expect = 0.81 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 12/69 (17%) Query: 101 KKN---SFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIA-- 155 KKN + K E K L+ S ++ Y + +P+S FD ++K L Sbjct: 422 KKNVKINIFEKEEGKNLLGPSILNEIYVY---DGNVIGIPES-FDGVKEEFKDFLEKGKS 477 Query: 156 ---PNNISF 161 I + Sbjct: 478 EGVATGIRY 486 >2hhv_A DNA polymerase I; DNA replication, klenow fragment, protein- DNA complex, O6-methyl-guanine, transferase/DNA complex; HET: DNA 6OG SUC; 1.55A {Geobacillus stearothermophilus} SCOP: c.55.3.5 e.8.1.1 PDB: 2hhs_A* 2hht_A* 2hhu_A* 2hhq_A* 2hhx_A* 2hw3_A* 1nk4_A* 1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* 1njw_A* 1l3s_A* 1njy_A* 1njz_A* 1nk0_A* 1njx_A* 1nk5_A* 1nk6_A* 1nk7_A* ... Length = 580 Score = 28.0 bits (61), Expect = 1.4 Identities = 11/38 (28%), Positives = 17/38 (44%) Query: 89 EDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAY 126 D K K+ + LK + +L +SFD + AY Sbjct: 66 GDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAY 103 >2pt0_A MYO-inositol hexaphosphate phosphohydrolase; PTP, protein tyrosine phosphatase, phytase, P-loop, cysteine-sulfonic acid, oxidized thiol.; 1.70A {Selenomonas ruminantium} SCOP: c.45.1.4 PDB: 2psz_A 3d1h_A 3d1o_A 3d1q_A 1u24_A 1u25_A* 1u26_A* 2b4o_A 2b4p_A 2b4u_A Length = 340 Score = 27.2 bits (60), Expect = 2.3 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 3/89 (3%) Query: 96 PAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIA 155 A+L K L +E +L T +A K K+ + + + Q ++ ++ A Sbjct: 148 WANLGKSQHEALADERHRLHAALHKTVYIAPLGKH-KLPEGGEVR-RVQKVQTEQEVAEA 205 Query: 156 PNNISFHRLLNTMEQTPNKTVVQDFIKNI 184 + + R+ T P + F+ Sbjct: 206 -AGMRYFRIAATDHVWPTPENIDRFLAFY 233 >1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* Length = 381 Score = 26.2 bits (57), Expect = 5.3 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 74 VDVIITKDETSLALNEDLLHKLPAHLIKKN----SFVLKNENKKLMRISFDTQVLAYSTK 129 VD +IT E + + LLHK+ ++ +L++ +K + S L + K Sbjct: 215 VDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQK 274 Query: 130 RIKIADLPKS 139 I L Sbjct: 275 CFLILKLDHG 284 >3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein, structural genomics, joint center for structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987} Length = 311 Score = 25.9 bits (56), Expect = 5.8 Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 5/36 (13%) Query: 31 LYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRP 66 +Y +IHS V+I P+ T Sbjct: 272 MYIGDGN-----MIHSPRAERSVEIIPLNTPGYIEE 302 >2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase, zinc; NMR {Methanothermobacterthermautotrophicus str} Length = 151 Score = 25.6 bits (56), Expect = 8.2 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 6/31 (19%) Query: 129 KRIKIADLPKSVFD------LTNAQWKKRLS 153 RI I + K+ + L++ +W++ L Sbjct: 3 DRIPIFSVAKNRVEMVERIELSDDEWREILD 33 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.133 0.371 Gapped Lambda K H 0.267 0.0514 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,517,774 Number of extensions: 63753 Number of successful extensions: 207 Number of sequences better than 10.0: 1 Number of HSP's gapped: 207 Number of HSP's successfully gapped: 55 Length of query: 195 Length of database: 5,693,230 Length adjustment: 87 Effective length of query: 108 Effective length of database: 3,584,002 Effective search space: 387072216 Effective search space used: 387072216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.1 bits)