RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780563|ref|YP_003064976.1| extracellular solute-binding protein [Candidatus Liberibacter asiaticus str. psy62] (195 letters) >d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]} Length = 311 Score = 69.7 bits (169), Expect = 1e-13 Identities = 36/165 (21%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG--SPVDVIITKDETS 84 + +Y Q+++++ + F + TG+K++ + + +G SP DV +T++ + Sbjct: 6 IVVYNAQHENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPA 65 Query: 85 L--ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFD 142 + N L L A + + + E+ + I+ + V Y+ ++I A+LPKS+ D Sbjct: 66 MVLVDNAKLFAPLDAVTQAQVAQEYRPEHGRWTGIAARSTVFVYNPEKISEAELPKSIMD 125 Query: 143 LTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187 L +WK R + +P+ F +++ M + + +++K + N Sbjct: 126 LAKPEWKGRWAASPSGADFQAIVSAMLELKGEKATLEWLKAMKTN 170 >d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]} Length = 318 Score = 54.6 bits (130), Expect = 5e-09 Identities = 30/172 (17%), Positives = 70/172 (40%), Gaps = 7/172 (4%) Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG-SPVDVIITKDETSL 85 + +Y+ + ++ P++ +FE+ TG+K++ I+ + R SP DV++T D + + Sbjct: 4 VNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRV 63 Query: 86 ALNED---LLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFD 142 + L K ++ N + ++ +V+ S R+ D Sbjct: 64 MEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLD 123 Query: 143 LTNAQWKKRLSIAPNNISFHR-LLNTMEQTPNKTVVQDFIKNITANEILTKY 193 L ++K ++ + S++ L M + + F++ + AN Sbjct: 124 LAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQ 175 >d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]} Length = 317 Score = 51.7 bits (122), Expect = 4e-08 Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 8/167 (4%) Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQG-SPVDVIITKDETS 84 L +Y+ ++ + II FEE+TG+K++ + I+R + SP D+ IT D ++ Sbjct: 3 LNIYSARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITADISN 62 Query: 85 LALNEDLLHKLPAHLIKKNSFV---LKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVF 141 L ++L P F+ L++++K+ I+ +++AY+ K+ Sbjct: 63 LTEAKNLGLLSPVSSKYLEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYE 122 Query: 142 DLTNAQWKKRLSIAPNNISFHRL-LNTMEQTPNKTVVQDFIKNITAN 187 DL A++K + + + + L ++ + + K + N Sbjct: 123 DLAKAEFKGEIVMRSATAPYSKTLLASIIANDGNKEAKAWAKGVLEN 169 >d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]} Length = 308 Score = 50.6 bits (119), Expect = 9e-08 Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 8/167 (4%) Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG--SPVDVIITKDETS 84 +T+Y Q + + +FE+ TG+K++ S + +G +P DV T+ + Sbjct: 2 ITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTAT 61 Query: 85 LALNEDLLHKLPA----HLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSV 140 A + P V K + +S ++V+ Y ++ D+ KSV Sbjct: 62 FADLSEAGLLAPISEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKSV 121 Query: 141 FDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187 D +WK ++ + +F + + + V +++K + N Sbjct: 122 LDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKEN 168 >d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella pertussis [TaxId: 520]} Length = 318 Score = 46.3 bits (108), Expect = 2e-06 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 3/143 (2%) Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG-SPVDVIITKDETSL 85 ++LYT + ++ P++ +F + +G+K++ ++ ++R SP DV++T D +L Sbjct: 3 VSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNL 62 Query: 86 ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTN 145 + +S V N + + DL + Sbjct: 63 IDLVNGGVTQKIQSQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKLDSFRYGDLAD 122 Query: 146 AQWKKRLSIAPNNISFHRLLNTM 168 +WK ++ I ++ L Sbjct: 123 PKWKGKVCIRSGQHPYNTALVAA 145 >d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]} Length = 231 Score = 35.8 bits (81), Expect = 0.002 Identities = 22/162 (13%), Positives = 40/162 (24%), Gaps = 21/162 (12%) Query: 29 LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSS-IQRPPITQGSPVDVIITKDETSLA 86 L + T N + + F ++TG + SS I G+P +V + DE S Sbjct: 2 LKVVTATNFLGTLEQLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAPYNVFFSADEKSPE 61 Query: 87 LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146 ++ + L F + K + L Sbjct: 62 KLDN-------------------QGFALPGSRFTYAIGKLVLWSAKPGLVDNQGKVLAGN 102 Query: 147 QWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITANE 188 W+ P + + + I Sbjct: 103 GWRHIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEAN 144 >d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 Score = 32.9 bits (73), Expect = 0.020 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 5/103 (4%) Query: 37 QSVMLPIIHSFEER-TGVKISPIYTSS--IQRPPITQGSPVDVIITKDETSL--ALNEDL 91 M +FEE+ V++ S R G DVI T D T + + + Sbjct: 13 TEPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADYTLIQKMMYPEF 72 Query: 92 LHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIA 134 + + +N+++ I+ ++ Sbjct: 73 ANWTIMFAKNQIVLAYRNDSRYADEINSQNWYEILKRPDVRFG 115 >d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]} Length = 369 Score = 31.3 bits (69), Expect = 0.053 Identities = 16/154 (10%), Positives = 41/154 (26%), Gaps = 12/154 (7%) Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82 L ++ D+ + + + FE+ T K++ + ++ G D+I D Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTDPKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66 Query: 83 TSLALNEDLLHKLPAHLIKKNSFV------LKNENKKLMRISFDTQVLAYSTKRIKIADL 136 LL ++ ++ ++ K + + K + Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPP 126 Query: 137 PKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQ 170 + K + + T Sbjct: 127 KTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL 160 >d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Escherichia coli [TaxId: 562]} Length = 231 Score = 29.6 bits (65), Expect = 0.20 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 29 LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSS 62 +T++ + + M I F++ GV + + SS Sbjct: 3 ITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASS 37 >d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]} Length = 322 Score = 29.3 bits (64), Expect = 0.20 Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 15/152 (9%) Query: 43 IIHSFEERTGVKISPIYTSS----IQRPPITQGSPVDVI-ITKDETSLALNEDLLHKLPA 97 ++ F + TG+K+ S + + D++ + E ++ K+ Sbjct: 17 LLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDK 76 Query: 98 HLIKKNSFVLKN--------ENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWK 149 + S + + N + + + + + S DL ++K Sbjct: 77 SKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVD-PKSVTSWADLWKPEYK 135 Query: 150 -KRLSIAPNNISFHRLLNTMEQTPNKTVVQDF 180 L F L + + N T ++ Sbjct: 136 GSLLLTDDAREVFQMALRKLGYSGNTTDPKEI 167 >d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella typhimurium [TaxId: 90371]} Length = 309 Score = 28.3 bits (62), Expect = 0.39 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 7/58 (12%) Query: 31 LYTDQNQSVMLPIIHSFEERTGVKISPIYT---SSIQRPPITQGSPVDVIITKDETSL 85 LY N++ +++ TG + + S Q + G D + + Sbjct: 16 LYEQYNKA----FSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDV 69 >d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]} Length = 341 Score = 27.8 bits (60), Expect = 0.70 Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 24/174 (13%) Query: 43 IIHSFEERTGVKISPIYTSS---IQRPPITQGSPVDVI-ITKDETSLALNEDLLHKLPAH 98 + +FE+ TG+K+ S ++ + + D++ + L + L Sbjct: 17 TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKS 76 Query: 99 LIKKNSFVLKNENKKLMRISFDTQ----------VLAYSTKRIKIADLPKS----VFDLT 144 + + + K + + D + + Y+ ++K + + Sbjct: 77 KLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLIL 136 Query: 145 NAQWKKRLSIAPNNIS------FHRLLNTMEQTPNKTVVQDFIKNITANEILTK 192 + ++L + F +LN + + PN T D+ T + + Sbjct: 137 KPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLR 190 >d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2 {Sphingomonas sp. [TaxId: 28214]} Length = 492 Score = 24.5 bits (52), Expect = 6.0 Identities = 4/35 (11%), Positives = 10/35 (28%) Query: 28 YLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS 62 ++ P+ T VK+ + + Sbjct: 16 HMHFRDKWVWDENWPVAKESFRLTNVKLQSVANKA 50 >d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Score = 23.9 bits (52), Expect = 9.2 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%) Query: 20 FSTEN--TTKYLTLYTDQNQSVMLPIIHSF 47 FS EN YL D +Q + + + + Sbjct: 19 FSRENLSKDLYLISQMDSDQFIPIWTVANM 48 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.133 0.371 Gapped Lambda K H 0.267 0.0375 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 662,371 Number of extensions: 27948 Number of successful extensions: 73 Number of sequences better than 10.0: 1 Number of HSP's gapped: 72 Number of HSP's successfully gapped: 17 Length of query: 195 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 114 Effective length of database: 1,295,466 Effective search space: 147683124 Effective search space used: 147683124 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (24.0 bits)