RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780563|ref|YP_003064976.1| extracellular solute-binding
protein [Candidatus Liberibacter asiaticus str. psy62]
         (195 letters)



>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia
           enterocolitica, YfuA [TaxId: 630]}
          Length = 311

 Score = 69.7 bits (169), Expect = 1e-13
 Identities = 36/165 (21%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 29  LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG--SPVDVIITKDETS 84
           + +Y  Q+++++   +  F + TG+K++        +    + +G  SP DV +T++  +
Sbjct: 6   IVVYNAQHENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPA 65

Query: 85  L--ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFD 142
           +    N  L   L A    + +   + E+ +   I+  + V  Y+ ++I  A+LPKS+ D
Sbjct: 66  MVLVDNAKLFAPLDAVTQAQVAQEYRPEHGRWTGIAARSTVFVYNPEKISEAELPKSIMD 125

Query: 143 LTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187
           L   +WK R + +P+   F  +++ M +   +    +++K +  N
Sbjct: 126 LAKPEWKGRWAASPSGADFQAIVSAMLELKGEKATLEWLKAMKTN 170


>d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia
           haemolytica [TaxId: 75985]}
          Length = 318

 Score = 54.6 bits (130), Expect = 5e-09
 Identities = 30/172 (17%), Positives = 70/172 (40%), Gaps = 7/172 (4%)

Query: 29  LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG-SPVDVIITKDETSL 85
           + +Y+ +   ++ P++ +FE+ TG+K++ I+     + R       SP DV++T D + +
Sbjct: 4   VNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRV 63

Query: 86  ALNED---LLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFD 142
               +           L K      ++ N +   ++   +V+  S  R+          D
Sbjct: 64  MEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLD 123

Query: 143 LTNAQWKKRLSIAPNNISFHR-LLNTMEQTPNKTVVQDFIKNITANEILTKY 193
           L   ++K ++ +     S++  L   M +       + F++ + AN      
Sbjct: 124 LAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQ 175


>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter
           jejuni [TaxId: 197]}
          Length = 317

 Score = 51.7 bits (122), Expect = 4e-08
 Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 8/167 (4%)

Query: 29  LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQG-SPVDVIITKDETS 84
           L +Y+ ++ +    II  FEE+TG+K++     +   I+R  +    SP D+ IT D ++
Sbjct: 3   LNIYSARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITADISN 62

Query: 85  LALNEDLLHKLPAHLIKKNSFV---LKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVF 141
           L   ++L    P        F+   L++++K+   I+   +++AY+          K+  
Sbjct: 63  LTEAKNLGLLSPVSSKYLEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYE 122

Query: 142 DLTNAQWKKRLSIAPNNISFHRL-LNTMEQTPNKTVVQDFIKNITAN 187
           DL  A++K  + +      + +  L ++         + + K +  N
Sbjct: 123 DLAKAEFKGEIVMRSATAPYSKTLLASIIANDGNKEAKAWAKGVLEN 169


>d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus
           influenzae [TaxId: 727]}
          Length = 308

 Score = 50.6 bits (119), Expect = 9e-08
 Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 29  LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG--SPVDVIITKDETS 84
           +T+Y  Q +     +  +FE+ TG+K++     S  +      +G  +P DV  T+   +
Sbjct: 2   ITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTAT 61

Query: 85  LALNEDLLHKLPA----HLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSV 140
            A   +     P             V     K  + +S  ++V+ Y   ++   D+ KSV
Sbjct: 62  FADLSEAGLLAPISEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKSV 121

Query: 141 FDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187
            D    +WK ++     + +F   +  + +     V  +++K +  N
Sbjct: 122 LDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKEN 168


>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella
           pertussis [TaxId: 520]}
          Length = 318

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 3/143 (2%)

Query: 29  LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG-SPVDVIITKDETSL 85
           ++LYT +   ++ P++ +F + +G+K++ ++     ++R       SP DV++T D  +L
Sbjct: 3   VSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNL 62

Query: 86  ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTN 145
               +            +S V  N           +           +        DL +
Sbjct: 63  IDLVNGGVTQKIQSQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKLDSFRYGDLAD 122

Query: 146 AQWKKRLSIAPNNISFHRLLNTM 168
            +WK ++ I      ++  L   
Sbjct: 123 PKWKGKVCIRSGQHPYNTALVAA 145


>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter
           vinelandii [TaxId: 354]}
          Length = 231

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 22/162 (13%), Positives = 40/162 (24%), Gaps = 21/162 (12%)

Query: 29  LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSS-IQRPPITQGSPVDVIITKDETSLA 86
           L + T  N    +  +   F ++TG  +     SS      I  G+P +V  + DE S  
Sbjct: 2   LKVVTATNFLGTLEQLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAPYNVFFSADEKSPE 61

Query: 87  LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146
             ++                   +   L    F   +        K   +      L   
Sbjct: 62  KLDN-------------------QGFALPGSRFTYAIGKLVLWSAKPGLVDNQGKVLAGN 102

Query: 147 QWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITANE 188
            W+      P    +      +             + I    
Sbjct: 103 GWRHIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEAN 144


>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 311

 Score = 32.9 bits (73), Expect = 0.020
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 37  QSVMLPIIHSFEER-TGVKISPIYTSS--IQRPPITQGSPVDVIITKDETSL--ALNEDL 91
              M     +FEE+   V++      S    R     G   DVI T D T +   +  + 
Sbjct: 13  TEPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADYTLIQKMMYPEF 72

Query: 92  LHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIA 134
            +        +     +N+++    I+            ++  
Sbjct: 73  ANWTIMFAKNQIVLAYRNDSRYADEINSQNWYEILKRPDVRFG 115


>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP
           {Escherichia coli [TaxId: 562]}
          Length = 369

 Score = 31.3 bits (69), Expect = 0.053
 Identities = 16/154 (10%), Positives = 41/154 (26%), Gaps = 12/154 (7%)

Query: 29  LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
           L ++   D+  + +  +   FE+ T  K++  +   ++         G   D+I    D 
Sbjct: 7   LVIWINGDKGYNGLAEVGKKFEKDTDPKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66

Query: 83  TSLALNEDLLHKLPAHLIKKNSFV------LKNENKKLMRISFDTQVLAYSTKRIKIADL 136
                   LL ++      ++         ++   K +        +     K +     
Sbjct: 67  FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPP 126

Query: 137 PKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQ 170
                     +  K    +    +      T   
Sbjct: 127 KTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL 160


>d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA
          {Escherichia coli [TaxId: 562]}
          Length = 231

 Score = 29.6 bits (65), Expect = 0.20
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 29 LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSS 62
          +T++   +  + M  I   F++  GV +   + SS
Sbjct: 3  ITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASS 37


>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD
           {Escherichia coli [TaxId: 562]}
          Length = 322

 Score = 29.3 bits (64), Expect = 0.20
 Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 15/152 (9%)

Query: 43  IIHSFEERTGVKISPIYTSS----IQRPPITQGSPVDVI-ITKDETSLALNEDLLHKLPA 97
           ++  F + TG+K+      S      +    +    D++  +         E ++ K+  
Sbjct: 17  LLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDK 76

Query: 98  HLIKKNSFVLKN--------ENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWK 149
             +   S +  +         N   +   +    +  +   +       S  DL   ++K
Sbjct: 77  SKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVD-PKSVTSWADLWKPEYK 135

Query: 150 -KRLSIAPNNISFHRLLNTMEQTPNKTVVQDF 180
              L        F   L  +  + N T  ++ 
Sbjct: 136 GSLLLTDDAREVFQMALRKLGYSGNTTDPKEI 167


>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella
          typhimurium [TaxId: 90371]}
          Length = 309

 Score = 28.3 bits (62), Expect = 0.39
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 7/58 (12%)

Query: 31 LYTDQNQSVMLPIIHSFEERTGVKISPIYT---SSIQRPPITQGSPVDVIITKDETSL 85
          LY   N++        +++ TG  +    +   S  Q   +  G   D +       +
Sbjct: 16 LYEQYNKA----FSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDV 69


>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli
           [TaxId: 562]}
          Length = 341

 Score = 27.8 bits (60), Expect = 0.70
 Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 43  IIHSFEERTGVKISPIYTSS---IQRPPITQGSPVDVI-ITKDETSLALNEDLLHKLPAH 98
            + +FE+ TG+K+      S   ++   +   +  D++  +       L   +   L   
Sbjct: 17  TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKS 76

Query: 99  LIKKNSFVLKNENKKLMRISFDTQ----------VLAYSTKRIKIADLPKS----VFDLT 144
            + +   +     K + +   D +           + Y+  ++K      +       + 
Sbjct: 77  KLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLIL 136

Query: 145 NAQWKKRLSIAPNNIS------FHRLLNTMEQTPNKTVVQDFIKNITANEILTK 192
             +  ++L     +        F  +LN + + PN T   D+    T   +  +
Sbjct: 137 KPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLR 190


>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2
          {Sphingomonas sp. [TaxId: 28214]}
          Length = 492

 Score = 24.5 bits (52), Expect = 6.0
 Identities = 4/35 (11%), Positives = 10/35 (28%)

Query: 28 YLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS 62
          ++            P+       T VK+  +   +
Sbjct: 16 HMHFRDKWVWDENWPVAKESFRLTNVKLQSVANKA 50


>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 88

 Score = 23.9 bits (52), Expect = 9.2
 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 20 FSTEN--TTKYLTLYTDQNQSVMLPIIHSF 47
          FS EN     YL    D +Q + +  + + 
Sbjct: 19 FSRENLSKDLYLISQMDSDQFIPIWTVANM 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0375    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 662,371
Number of extensions: 27948
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 17
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (24.0 bits)