BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780563|ref|YP_003064976.1| extracellular solute-binding
protein [Candidatus Liberibacter asiaticus str. psy62]
         (195 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780563|ref|YP_003064976.1| extracellular solute-binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 195

 Score =  398 bits (1023), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MFKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYT 60
           MFKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYT
Sbjct: 1   MFKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYT 60

Query: 61  SSIQRPPITQGSPVDVIITKDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFD 120
           SSIQRPPITQGSPVDVIITKDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFD
Sbjct: 61  SSIQRPPITQGSPVDVIITKDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFD 120

Query: 121 TQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDF 180
           TQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDF
Sbjct: 121 TQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDF 180

Query: 181 IKNITANEILTKYKR 195
           IKNITANEILTKYKR
Sbjct: 181 IKNITANEILTKYKR 195


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 466

 Score = 25.4 bits (54), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 115 MRISFDTQVLAYSTKRIKIADLPKSVF 141
           M I FD QV+  ST  +  + +PK++ 
Sbjct: 152 MSIDFDEQVIVSSTGALSFSSVPKNLL 178


>gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 648

 Score = 21.9 bits (45), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 59  YTSSIQRPPITQGSPVDVIITKDETSLALNEDLLHKLPAHLIKKNSF--VLKNENKKLMR 116
           +  S+QR     G P+ V+  K E    +  DL+  +    +  + F   LKN   K + 
Sbjct: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE---VATDFFHHSLKNARDKRLH 141

Query: 117 ISFDTQ-VLAYSTKRIKIADLPKSVFDL 143
              D + + +++ +  K+   P S + L
Sbjct: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSL 169


>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 458

 Score = 21.6 bits (44), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 75  DVIITKDETSLALNEDLLHKLPAHLIKKNSFVL 107
           D + T  +T ++ NED +H++  +L  K   VL
Sbjct: 341 DAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVL 373


>gi|254780289|ref|YP_003064702.1| RNA polymerase sigma factor RpoD [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 682

 Score = 21.6 bits (44), Expect = 9.9,   Method: Composition-based stats.
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 140 VFDLTNAQWKKRLSIA 155
           VFD ++  WKK + +A
Sbjct: 23  VFDFSDDSWKKMIKLA 38


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.133    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,820
Number of Sequences: 1233
Number of extensions: 4493
Number of successful extensions: 19
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 9
length of query: 195
length of database: 328,796
effective HSP length: 69
effective length of query: 126
effective length of database: 243,719
effective search space: 30708594
effective search space used: 30708594
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)