HHsearch alignment for GI: 254780564 and conserved domain: COG1653
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].
Probab=97.94 E-value=3.4e-05 Score=48.77 Aligned_cols=83 Identities=25% Similarity=0.328 Sum_probs=63.9
Q ss_pred HHHHHHHCCC---CCCEEECCCCCC--CCCCEEEEEEEEEECCCCC-HHHHHHHHHHHHCHHHHHH-HHHHCCCCHHCCC
Q ss_conf 9999851487---853550465899--8510686541216316998-8999999999839999999-9740021001068
Q gi|254780564|r 6 SVAIFKNHHS---EVSVSYTPFLPK--DIGNILCSTVGGIAESSKK-KSVATQFLRFLLLPIVQQY-IATALGEYPIIKG 78 (107)
Q Consensus 6 y~~~~k~~~~---~~~v~~~~f~~~--D~G~~v~vsgagI~k~a~n-~~~A~kfiefLlS~e~Q~~-~a~~~~eyPv~~g 78 (107)
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~i~~~~~~~~~aA~~fi~~l~s~e~q~~~~~~~~g~~P~~~~ 356 (433)
T COG1653 277 AIGYFKKAAGPKFDIGVAPLPAGPGGGGAAGGVGGGGLGVSKKSKKHKEAAWKFLEFLTSPEAQAELLAKVTGGLPVRKS 356 (433)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHH
T ss_conf 76666513454566468826878887875221155379997489866999999999976908788887741487876255
Q ss_pred CCCCCCCCCC
Q ss_conf 7674210125
Q gi|254780564|r 79 IITNRKFNDQ 88 (107)
Q Consensus 79 V~~~~~~~~~ 88 (107)
T Consensus 357 ~~~~~~~~~~ 366 (433)
T COG1653 357 AYDDPYDKEA 366 (433)
T ss_pred HHCCCCCCCH
T ss_conf 4306321210