HHsearch alignment for GI: 254780564 and conserved domain: TIGR03227
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=99.60 E-value=2.3e-15 Score=103.67 Aligned_cols=102 Identities=9% Similarity=0.051 Sum_probs=80.8
Q ss_pred HHHHHHHHCCCCCCEEECCCCCCC-CCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCC
Q ss_conf 899998514878535504658998-5106865412163169988999999999839999999974002100106876742
Q gi|254780564|r 5 SSVAIFKNHHSEVSVSYTPFLPKD-IGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNR 83 (107)
Q Consensus 5 yy~~~~k~~~~~~~v~~~~f~~~D-~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~ 83 (107)
T Consensus 236 ~~~~~~~~~g~~v~~v~P~~~~g~~~g~~~i~~~i~ivKga~n~e~AkkfidflLS~e~Q~~~a~~~~~~Pv~~~v~l~~ 315 (367)
T TIGR03227 236 MDLADAEHGGLNIKIFFPAADAGEPPSAFAIPYAIGLVKGAPNQDAGKKLIDFLLSADAQAKVPDLSFGIPGRSDVPLSD 315 (367)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 43677762799702895467778887348752203464499998999999999729999999998601676778876983
Q ss_pred CCCC-----CCCCCCCCCCHHHHHHCCC
Q ss_conf 1012-----5544725658657863078
Q gi|254780564|r 84 KFND-----QTYTNRESFELIKTAQNPP 106 (107)
Q Consensus 84 ~~~~-----~~~~~~d~~~l~~~a~n~p 106 (107)
T Consensus 316 ~~~~~~~~~~~~~kl~~~Dw~~i~~~r~ 343 (367)
T TIGR03227 316 EHGEAAKAAIAGVKLIPPDWDAVAAKKP 343 (367)
T ss_pred HHHHHCCCCCCCCEEECCCHHHHHHHHH
T ss_conf 5554221332335111589999998789