HHsearch alignment of GI: 254780564 and MMDB domain: 1twy_A_

>1twy_A (A:) ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str}
Probab=98.78  E-value=6.3e-09  Score=68.56  Aligned_cols=55  Identities=15%  Similarity=-0.013  Sum_probs=48.5

Q ss_pred             CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCC
Q ss_conf             99851068654121631699889999999998399999999740021001068767
Q gi|254780564|r   26 PKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIIT   81 (107)
Q Consensus        26 ~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~   81 (107)
                      |.+ |+.+.+.+.+|+++++|+++|++||+||+|+|+|+.+++..+..|..+.+..
T Consensus       229 p~~-~~~~~~~~~~i~~~a~~~~~A~~Fi~~lls~e~Q~~~~~~g~~~~~~~~~~~  283 (290)
T 1twy_A          229 AKH-TYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYIXPSDVEEGG  283 (290)
T ss_dssp             HTT-CSCCEEEEEEEECTTTCCHHHHHHHHHHHSHHHHHHHHHTTCBCC-------
T ss_pred             CCC-CCCCEEEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHC
T ss_conf             269-8863558999997999999999999998699889999978698786676625