Query gi|254780564|ref|YP_003064977.1| hypothetical protein CLIBASIA_02255 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 107
No_of_seqs 103 out of 848
Neff 5.0
Searched_HMMs 13730
Date Wed Jun 1 09:26:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780564.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q35a_ c.94.1.1 (A:) Ferric-b 99.7 2.7E-18 1.9E-22 117.1 6.8 81 26-106 222-302 (318)
2 d1y9ua_ c.94.1.1 (A:) Ferric-b 99.7 1.1E-17 7.7E-22 113.8 6.3 86 21-106 220-305 (318)
3 d1y4ta_ c.94.1.1 (A:) Ferric-b 99.7 2.8E-17 2.1E-21 111.5 6.9 89 18-106 217-305 (317)
4 d1xvxa_ c.94.1.1 (A:) Ferric-b 99.6 3.5E-16 2.5E-20 105.7 9.7 90 13-102 207-297 (311)
5 d1nnfa_ c.94.1.1 (A:) Ferric-b 99.6 1E-15 7.3E-20 103.2 8.4 84 17-100 209-292 (308)
6 d1pota_ c.94.1.1 (A:) Spermidi 99.1 1.6E-10 1.2E-14 75.0 8.3 72 4-80 205-276 (322)
7 d1atga_ c.94.1.1 (A:) Molybdat 98.9 1.3E-10 9.6E-15 75.5 2.8 49 25-74 182-230 (231)
8 d1sbpa_ c.94.1.1 (A:) Sulphate 98.9 2E-10 1.5E-14 74.5 1.5 74 3-81 192-269 (309)
9 d1a99a_ c.94.1.1 (A:) Putresci 98.8 3.5E-09 2.5E-13 67.8 6.9 59 22-81 237-295 (341)
10 d2onsa1 c.94.1.1 (A:32-342) Mo 98.8 3.3E-09 2.4E-13 68.0 5.1 56 26-82 244-299 (311)
11 d1amfa_ c.94.1.1 (A:) Molybdat 98.7 1.2E-08 9E-13 64.9 5.6 56 10-71 173-228 (231)
12 d1ursa_ c.94.1.1 (A:) D-maltod 98.6 4.1E-08 3E-12 62.1 6.3 82 4-85 225-308 (367)
13 d3thia_ c.94.1.1 (A:) Thiamina 98.5 2.4E-07 1.8E-11 57.9 7.8 75 4-78 232-306 (362)
14 d1eu8a_ c.94.1.1 (A:) D-maltod 98.3 6.1E-07 4.5E-11 55.7 5.6 70 16-85 273-343 (407)
15 d1elja_ c.94.1.1 (A:) D-maltod 98.2 5.1E-07 3.7E-11 56.2 4.7 83 4-86 229-317 (380)
16 d1laxa_ c.94.1.1 (A:) D-maltod 97.8 3.1E-05 2.3E-09 46.5 6.5 72 4-75 229-302 (369)
17 d1j1na_ c.94.1.1 (A:) Alginate 97.7 3.5E-05 2.6E-09 46.2 5.5 35 33-67 312-346 (492)
18 d1twya_ c.94.1.1 (A:) ABC tran 96.2 0.0032 2.3E-07 35.7 4.9 39 36-74 211-249 (249)
19 d1pc3a_ c.94.1.1 (A:) Phosphat 82.6 0.24 1.8E-05 25.5 1.6 28 48-75 289-316 (333)
20 d1p99a_ c.94.1.1 (A:) Putative 33.7 15 0.0011 15.8 4.3 31 39-69 202-232 (255)
21 d2v3qa1 c.94.1.1 (A:1-376) Pst 25.5 14 0.00098 16.1 1.5 33 46-79 312-346 (376)
No 1
>d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]}
Probab=99.73 E-value=2.7e-18 Score=117.09 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=76.7
Q ss_pred CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 99851068654121631699889999999998399999999740021001068767421012554472565865786307
Q gi|254780564|r 26 PKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNP 105 (107)
Q Consensus 26 ~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~~~d~~~l~~~a~n~ 105 (107)
....|+++.+.++||+|+++|+++|++||+||+|+|+|+.+++.+++|||+++|.+++.+++|+.++++.+++..+++++
T Consensus 222 ~~~~G~~~~~~~~~i~k~a~~~~~A~~fi~fllspe~Q~~~a~~~~~~Pv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
T d1q35a_ 222 SGEHGTHKNISGVVIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNY 301 (318)
T ss_dssp CSTTCBEEEEEEEEEBTTCTTHHHHHHHHHHHHSHHHHHHHHHHHCCEESSTTCCCCHHHHHTCCCCBCCCCHHHHHTTH
T ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEECCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 34565312110378978999879999999997499999999851643117889998922346554687778899998636
Q ss_pred C
Q ss_conf 8
Q gi|254780564|r 106 P 106 (107)
Q Consensus 106 p 106 (107)
+
T Consensus 302 ~ 302 (318)
T d1q35a_ 302 E 302 (318)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 2
>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella pertussis [TaxId: 520]}
Probab=99.69 E-value=1.1e-17 Score=113.84 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=79.3
Q ss_pred ECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 04658998510686541216316998899999999983999999997400210010687674210125544725658657
Q gi|254780564|r 21 YTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIK 100 (107)
Q Consensus 21 ~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~~~d~~~l~~ 100 (107)
...+...+.|+++.+.+++|+|+|+|+++|.+||+||+|+|+|+.+++.+++||++++|..++.++++..++++.+++.+
T Consensus 220 ~~~~~~p~~g~~~~~~~~~i~k~a~n~~~A~~Fi~~lls~e~Q~~~~~~~~~~Pv~~~v~~~~~~~~~~~~~~~~~~~~~ 299 (318)
T d1y9ua_ 220 PTFATAKDGGTHVNISGAAVAAHAPNKANAVKLLEYLVSEPAQTLYAQANYEYPVRAGVKLDAVVASFGPLKVDTLPVAE 299 (318)
T ss_dssp CBCC----CCBCEEEEEEEEETTCTTHHHHHHHHHHHTSHHHHHHHHHHTTCEESSTTCCCCHHHHHTCCCCBCCSCTHH
T ss_pred CCCCCCCCCCCEEECEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEEECCCCCCCCHHHCCCCCCCCCCCCHHH
T ss_conf 53245788872210113577258974799999999962999999999736175178999898000675546867689999
Q ss_pred HHHCCC
Q ss_conf 863078
Q gi|254780564|r 101 TAQNPP 106 (107)
Q Consensus 101 ~a~n~p 106 (107)
++.+++
T Consensus 300 ~~~~~~ 305 (318)
T d1y9ua_ 300 IAKYRK 305 (318)
T ss_dssp HHHHHH
T ss_pred HHHCCH
T ss_conf 984649
No 3
>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]}
Probab=99.68 E-value=2.8e-17 Score=111.53 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=80.6
Q ss_pred CEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35504658998510686541216316998899999999983999999997400210010687674210125544725658
Q gi|254780564|r 18 SVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFE 97 (107)
Q Consensus 18 ~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~~~d~~~ 97 (107)
++...+..+.+.|+++.+.+++|.++|+|+++|.+||+||+|+|+|+.+++.+++||++++|..++.+++|+.++.+.++
T Consensus 217 ~~~~~~p~~~~~G~~~~~~~~~i~k~a~n~~~A~~fi~~l~spe~Q~~~a~~~~~~P~~~~v~~~~~~~~~~~~~~~~i~ 296 (317)
T d1y4ta_ 217 SLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSPEIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIP 296 (317)
T ss_dssp TEEEECTTTTTTCBCEEEEEEEEETTCSCHHHHHHHHHHHTSHHHHHHHHHHHCCEESSTTSCCCHHHHHHCCCCBCCSC
T ss_pred CCEEECCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 83043365578751788888998468877799999999963999999999736501277899898000683315877789
Q ss_pred HHHHHHCCC
Q ss_conf 657863078
Q gi|254780564|r 98 LIKTAQNPP 106 (107)
Q Consensus 98 l~~~a~n~p 106 (107)
+..++++.+
T Consensus 297 ~~~~~~~~~ 305 (317)
T d1y4ta_ 297 VSKIAENIK 305 (317)
T ss_dssp HHHHHTTHH
T ss_pred HHHHHHHHH
T ss_conf 999987489
No 4
>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]}
Probab=99.65 E-value=3.5e-16 Score=105.65 Aligned_cols=90 Identities=20% Similarity=0.179 Sum_probs=78.6
Q ss_pred CCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHC-CCCHHCCCCCCCCCCCCCCCC
Q ss_conf 4878535504658998510686541216316998899999999983999999997400-210010687674210125544
Q gi|254780564|r 13 HHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATAL-GEYPIIKGIITNRKFNDQTYT 91 (107)
Q Consensus 13 ~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~-~eyPv~~gV~~~~~~~~~~~~ 91 (107)
......+...++.+++.|+++.+.++||+|+|+|+++|++||+||+|+|+|+.+++.+ ++||+.+++..++.+..+..+
T Consensus 207 ~~~~~~~~~~~~~~~~~G~~~~~~~~~I~k~s~n~~~A~~Fi~fl~s~e~Q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 286 (311)
T d1xvxa_ 207 GENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWITGKSGQDILRTNNAFEYAVGVDAASNPKLVPLKDL 286 (311)
T ss_dssp CTTTTTCEEECCCTTCGGGCEEEEEEEEBTTCSSHHHHHHHHHHHHSHHHHHHHHHSSSCCBCCBTTCCCCTTSCCGGGS
T ss_pred HHCCCCCEEECCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHC
T ss_conf 22022222420566898704311123443699998999999999759999999986487406677788888144882223
Q ss_pred CCCCCCHHHHH
Q ss_conf 72565865786
Q gi|254780564|r 92 NRESFELIKTA 102 (107)
Q Consensus 92 ~~d~~~l~~~a 102 (107)
+.+.+++..+.
T Consensus 287 ~~~~~~~~~~~ 297 (311)
T d1xvxa_ 287 DAPKVEPSKLN 297 (311)
T ss_dssp CCCCCCGGGCC
T ss_pred CCCCCCHHHCC
T ss_conf 86658956729
No 5
>d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]}
Probab=99.61 E-value=1e-15 Score=103.16 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=72.8
Q ss_pred CCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53550465899851068654121631699889999999998399999999740021001068767421012554472565
Q gi|254780564|r 17 VSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESF 96 (107)
Q Consensus 17 ~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~~~d~~ 96 (107)
...........+.|+++++.+.+|+|+|||+++|.+||+||+|+|+|+.+++.++.||++++|..+..++.+..++.+.+
T Consensus 209 ~~~~~~~~~~~~~g~~~~~~~~~I~k~s~n~~~A~~Fi~fl~s~e~Q~~~a~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 288 (308)
T d1nnfa_ 209 LKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAPVV 288 (308)
T ss_dssp CSEEEECCCTTCGGGCEEEEEEEEBTTCSCHHHHHHHHHHHHSHHHHHHHHHHSCCEECC-CCCCTTCCCCHHHHCCCCC
T ss_pred CCCCEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHCCCCCC
T ss_conf 34321102457898400133565306887899999999997499999999973547307889889713377233177654
Q ss_pred CHHH
Q ss_conf 8657
Q gi|254780564|r 97 ELIK 100 (107)
Q Consensus 97 ~l~~ 100 (107)
+...
T Consensus 289 ~~~~ 292 (308)
T d1nnfa_ 289 SATT 292 (308)
T ss_dssp CCCC
T ss_pred CHHH
T ss_conf 4887
No 6
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]}
Probab=99.10 E-value=1.6e-10 Score=75.02 Aligned_cols=72 Identities=24% Similarity=0.324 Sum_probs=60.3
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCC
Q ss_conf 78999985148785355046589985106865412163169988999999999839999999974002100106876
Q gi|254780564|r 4 ASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80 (107)
Q Consensus 4 ~yy~~~~k~~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~ 80 (107)
..........+.++.+.. |.+ |+++.+.+.+|.|+|+|+++|++||+||+|+|+|+.+++.++..|+.+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~----p~~-g~~~~~~~~~I~k~a~n~~~A~~fi~fl~s~e~q~~~~~~~g~~p~~~~a~ 276 (322)
T d1pota_ 205 NGSAFVARQAGTPIDVVW----PKE-GGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAAR 276 (322)
T ss_dssp HHHHHHHHTTSCCEEEEC----CTT-CCEEEEEEEBCBTTCTTHHHHHHHHHHHHSHHHHHHHHHHHCCCCSBSTTT
T ss_pred CHHHHHHHHHCCCCCEEE----CCC-CCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 143788875213431111----257-851522346875378898999999999708899999999868898587778
No 7
>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]}
Probab=98.95 E-value=1.3e-10 Score=75.54 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=44.4
Q ss_pred CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCH
Q ss_conf 89985106865412163169988999999999839999999974002100
Q gi|254780564|r 25 LPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYP 74 (107)
Q Consensus 25 ~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyP 74 (107)
.|.| |+...+.+++|+++++|+++|++|++||+|+++|+.+.+..|++|
T Consensus 182 ~~~~-~~~~~~~~~~i~~~a~~~~~A~~Fidfl~S~e~Q~i~~~~Gf~~P 230 (231)
T d1atga_ 182 PPAN-YYEPIVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGYVLP 230 (231)
T ss_dssp CCGG-GSCCCEEEEEEBTTCSCHHHHHHHHHHTTSHHHHHHHHHTTCBCC
T ss_pred ECCC-CCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 4488-863666669998899998999999999789999999998489899
No 8
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella typhimurium [TaxId: 90371]}
Probab=98.87 E-value=2e-10 Score=74.55 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=51.5
Q ss_pred CHHHHHHHHHC--CCCCCEEECCCCCCC--CCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCC
Q ss_conf 47899998514--878535504658998--51068654121631699889999999998399999999740021001068
Q gi|254780564|r 3 NASSVAIFKNH--HSEVSVSYTPFLPKD--IGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78 (107)
Q Consensus 3 n~yy~~~~k~~--~~~~~v~~~~f~~~D--~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~g 78 (107)
..|++....+. +..+.+++ |.+ ....-.+.+.++++.++|+++|++||+||+|+|+|++++... -.|+.++
T Consensus 192 ~~~~a~~~~~~~~~~~~~~v~----p~~~~~~~~~v~~~~~~~~~~~n~~~A~~FidfllS~egQ~i~~~~G-~~P~~~~ 266 (309)
T d1sbpa_ 192 WENEALLATNELGKDKFEIVT----PSESILAEPTVSVVDKVVEKKDTKAVAEAYLKYLYSPEGQEIAAKNF-YRPRDAD 266 (309)
T ss_dssp EHHHHHHHHHTTTTTTEEEEC----CSEEECBCCEEEECHHHHHHHTCHHHHHHHHHGGGSHHHHHHHHHTT-CEESCHH
T ss_pred ECCHHHHHHHHHCCCCEEEEC----CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHCC-CCCCCCC
T ss_conf 411999998764278537846----88766666776999721267888999999999963999999999859-9469933
Q ss_pred CCC
Q ss_conf 767
Q gi|254780564|r 79 IIT 81 (107)
Q Consensus 79 V~~ 81 (107)
|..
T Consensus 267 v~~ 269 (309)
T d1sbpa_ 267 VAK 269 (309)
T ss_dssp HHH
T ss_pred CCH
T ss_conf 040
No 9
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]}
Probab=98.84 E-value=3.5e-09 Score=67.85 Aligned_cols=59 Identities=27% Similarity=0.265 Sum_probs=52.7
Q ss_pred CCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCC
Q ss_conf 465899851068654121631699889999999998399999999740021001068767
Q gi|254780564|r 22 TPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIIT 81 (107)
Q Consensus 22 ~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~ 81 (107)
....|++ |+.....+.+|.++|+|+++|.+||+||+|+|+|+.+++.....|+++++..
T Consensus 237 ~~~~p~~-~~~~~~~~~~i~~~s~n~~~A~~fi~fl~s~e~q~~~~~~~g~~p~~~~a~~ 295 (341)
T d1a99a_ 237 SFSIPKE-GAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATP 295 (341)
T ss_dssp EEECCTT-CEEEEEEEEECBTTCSCHHHHHHHHHHHHSHHHHHHHHHHHCCEESBTTTGG
T ss_pred CEECCCC-CEEEEEECCEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 2415888-6489843113344788869999999998478999999997388885788886
No 10
>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.77 E-value=3.3e-09 Score=67.97 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=47.3
Q ss_pred CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCC
Q ss_conf 998510686541216316998899999999983999999997400210010687674
Q gi|254780564|r 26 PKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITN 82 (107)
Q Consensus 26 ~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~ 82 (107)
..+.+......+.+|.++|+|+++|++||+||+|+|+|+.+++ ..-.|+++++...
T Consensus 244 ~~~~~~~~~~~~~~I~~~s~~~eaA~~Fi~fl~s~e~q~~~~~-~G~~P~~~~~~~~ 299 (311)
T d2onsa1 244 GKEVTGKPIVYGITIPKNAENRELAVEFVKLVISEEGQEILRE-LGQEPLVPPRADT 299 (311)
T ss_dssp SCEEECCCCEEEEECCTTCTTHHHHHHHHHHHHSHHHHHHHHH-TTCCEEEEEEESS
T ss_pred CCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHH-CCCCCCCCCCCCC
T ss_conf 7877773366689998999999999999999779999999998-6996689654557
No 11
>d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Escherichia coli [TaxId: 562]}
Probab=98.68 E-value=1.2e-08 Score=64.89 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=44.2
Q ss_pred HHHCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCC
Q ss_conf 85148785355046589985106865412163169988999999999839999999974002
Q gi|254780564|r 10 FKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALG 71 (107)
Q Consensus 10 ~k~~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~ 71 (107)
+.+.+.+..+. .|.| |+..++.+++|+++++|+ +|++||+||+|+++|++|++.-|
T Consensus 173 ~~~~~~~~~~~----~p~~-~~~~~~~~~~i~~~~~~~-~A~~Fi~fl~S~e~Q~il~~~Gf 228 (231)
T d1amfa_ 173 VASKGVKVVAT----FPED-SHKKVEYPVAVVEGHNNA-TVKAFYDYLKGPQAAEIFKRYGF 228 (231)
T ss_dssp HHCSSEEEEEE----CCGG-GSCCEEEEEEEBTTCCSH-HHHHHHHHHTSHHHHHHHHHTTC
T ss_pred HHCCCCCCEEE----ECCC-CCEEEEEEEEEECCCCCH-HHHHHHHHHCCHHHHHHHHHCCE
T ss_conf 53168870698----5798-843758889998799989-99999999789999999998390
No 12
>d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=98.60 E-value=4.1e-08 Score=62.08 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=64.3
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCCC--CCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCC
Q ss_conf 7899998514878535504658998--51068654121631699889999999998399999999740021001068767
Q gi|254780564|r 4 ASSVAIFKNHHSEVSVSYTPFLPKD--IGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIIT 81 (107)
Q Consensus 4 ~yy~~~~k~~~~~~~v~~~~f~~~D--~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~ 81 (107)
.+.+..++....++++...|..+++ .+.+....+.+|.++|+|+++|.+||+||+|+++|+.++......|+++.+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e~A~~fl~~l~s~e~q~~~~~~~g~~P~~~~~~~ 304 (367)
T d1ursa_ 225 PWDTADIEKAKIDFGVTPWPTLPNGKHATPFLGVITAFVNKESKTQAADWSLVQALTSAQAQQMYFRDSQQIPALLSVQR 304 (367)
T ss_dssp GGGHHHHHHTTCCEEEECCCCCTTSCCCCCEEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHHHHHCCEESSHHHHT
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 66654444411563266336578866431000565401021013168899999985069999999997198887376773
Q ss_pred CCCC
Q ss_conf 4210
Q gi|254780564|r 82 NRKF 85 (107)
Q Consensus 82 ~~~~ 85 (107)
+..+
T Consensus 305 ~~~~ 308 (367)
T d1ursa_ 305 SSAV 308 (367)
T ss_dssp SHHH
T ss_pred CHHH
T ss_conf 9553
No 13
>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]}
Probab=98.49 E-value=2.4e-07 Score=57.91 Aligned_cols=75 Identities=7% Similarity=-0.032 Sum_probs=60.7
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCC
Q ss_conf 789999851487853550465899851068654121631699889999999998399999999740021001068
Q gi|254780564|r 4 ASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78 (107)
Q Consensus 4 ~yy~~~~k~~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~g 78 (107)
++.+..+.....++.+...|...+..+..+...+.+|.++|+|+++|.+||+||+|++.|+.+.......++...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~fl~s~e~~~~~~~~~g~~~~~~~ 306 (362)
T d3thia_ 232 SESMMRMGDYAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPELAKKLANVMASADTVEQALRPQADGQYPQY 306 (362)
T ss_dssp TTHHHHHGGGGGTEEEECCBSCSSCCCCEEEEEEEEEETTCSCHHHHHHHHHHHHSHHHHHHHHSCCSTTCCCCC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 587655543067665464157877898754502311016764799999999997199999999984688767424
No 14
>d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=98.27 E-value=6.1e-07 Score=55.73 Aligned_cols=70 Identities=26% Similarity=0.273 Sum_probs=53.0
Q ss_pred CCCEEECCCCCCC-CCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCC
Q ss_conf 8535504658998-510686541216316998899999999983999999997400210010687674210
Q gi|254780564|r 16 EVSVSYTPFLPKD-IGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKF 85 (107)
Q Consensus 16 ~~~v~~~~f~~~D-~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~ 85 (107)
.+++...|..+++ .+......+.+|.++++|+++|.+||+||+|++.|+.+.......|+++.+..+..+
T Consensus 273 ~~~~~p~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fl~~l~s~e~~~~~~~~~g~~P~~~~~~~~~~~ 343 (407)
T d1eu8a_ 273 KVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSVQKGFAMNLGWNPGRVDVYDDPAV 343 (407)
T ss_dssp CEEEECCCBCTTSCCCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHHHHTCCCBSBTTGGGSHHH
T ss_pred CEEECCCCCCCCCCCCCEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHH
T ss_conf 53441112567865431130420267678754999999987400278999999851888662777739875
No 15
>d1elja_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=98.24 E-value=5.1e-07 Score=56.18 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=59.5
Q ss_pred HHHHHHHHHCCCCCCEEECCCCC-CC----CCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHH-HHHHHHCCCCHHCC
Q ss_conf 78999985148785355046589-98----51068654121631699889999999998399999-99974002100106
Q gi|254780564|r 4 ASSVAIFKNHHSEVSVSYTPFLP-KD----IGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQ-QYIATALGEYPIIK 77 (107)
Q Consensus 4 ~yy~~~~k~~~~~~~v~~~~f~~-~D----~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q-~~~a~~~~eyPv~~ 77 (107)
.+.+..++..+.++++...|..+ ++ .+......+.+|.++++|+++|.+||+||+|++.| +.+.......|+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~~l~s~e~~~~~~~~~~g~~P~~~ 308 (380)
T d1elja_ 229 PWSINDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTSEESIKTLALELGYIPVLT 308 (380)
T ss_dssp GGGHHHHHHTTCCEEEECCCCEEETTEEECCCCEEEEEEEEEBTTCSCHHHHHHHHHHHHHCHHHHHHHHHHHCCBCCBG
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 28899987543026644458878776666652211000011244674599999999986326999999998348888777
Q ss_pred CCCCCCCCC
Q ss_conf 876742101
Q gi|254780564|r 78 GIITNRKFN 86 (107)
Q Consensus 78 gV~~~~~~~ 86 (107)
.+..+..+.
T Consensus 309 ~~~~~~~~~ 317 (380)
T d1elja_ 309 KVLDDPEIK 317 (380)
T ss_dssp GGGGCHHHH
T ss_pred HHHHCHHHH
T ss_conf 788598755
No 16
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]}
Probab=97.76 E-value=3.1e-05 Score=46.52 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=55.1
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCCCC-CCEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHCCCCHH
Q ss_conf 78999985148785355046589985-10686541216316998899999999-98399999999740021001
Q gi|254780564|r 4 ASSVAIFKNHHSEVSVSYTPFLPKDI-GNILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPI 75 (107)
Q Consensus 4 ~yy~~~~k~~~~~~~v~~~~f~~~D~-G~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~~~eyPv 75 (107)
.+.+..++..+.++++...|..+++. +..+...+.+|.++|+|+++|.+||+ |+.|++.|+.+.......|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fi~~~~~~~~~~~~~~~~~~~~~~ 302 (369)
T d1laxa_ 229 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV 302 (369)
T ss_dssp GGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHHSCCCEE
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
T ss_conf 57754001124561376314555677655556435664057855899999999864899999999973898865
No 17
>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2 {Sphingomonas sp. [TaxId: 28214]}
Probab=97.66 E-value=3.5e-05 Score=46.23 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=30.6
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 86541216316998899999999983999999997
Q gi|254780564|r 33 LCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIA 67 (107)
Q Consensus 33 v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a 67 (107)
....+.+|.++|+|+++|.+||+||+|+|+|..+.
T Consensus 312 ~~~~~~~I~~~sk~~eaA~~fl~~l~s~e~~~~~~ 346 (492)
T d1j1na_ 312 VRPDGWAITVKNKNPVETIKFFDFYFSRPGRDISN 346 (492)
T ss_dssp SCSCEEEEBTTCSCHHHHHHHHHHTTSHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHH
T ss_conf 24426999899989999999999971988899986
No 18
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]}
Probab=96.23 E-value=0.0032 Score=35.68 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=30.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCH
Q ss_conf 412163169988999999999839999999974002100
Q gi|254780564|r 36 TVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYP 74 (107)
Q Consensus 36 sgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyP 74 (107)
.-.-+.+..+..++|++|++|++|+++|+++.+.-|--|
T Consensus 211 ~~~~~~~~~~~~~~a~~Fi~f~~S~~gq~ii~~~G~v~p 249 (249)
T d1twya_ 211 PFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYIMP 249 (249)
T ss_dssp EEEEEECTTTCCHHHHHHHHHHHSHHHHHHHHHTTCBCC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCC
T ss_conf 899999799999999999999819888999996799999
No 19
>d1pc3a_ c.94.1.1 (A:) Phosphate-binding protein {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=82.60 E-value=0.24 Score=25.51 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHCCCCHH
Q ss_conf 9999999998399999999740021001
Q gi|254780564|r 48 SVATQFLRFLLLPIVQQYIATALGEYPI 75 (107)
Q Consensus 48 ~~A~kfiefLlS~e~Q~~~a~~~~eyPv 75 (107)
.+.++||+|++|+++|+.+.....-.|+
T Consensus 289 ~~v~~Fl~~~ls~~gq~~~~~~~GyvPL 316 (333)
T d1pc3a_ 289 QTLQAFLHWAITDGNKASFLDQVHFQPL 316 (333)
T ss_dssp HHHHHHHHHHTTGGGSHHHHHHHTCBCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCEEC
T ss_conf 9999999998584147777885898579
No 20
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Staphylococcus aureus [TaxId: 1280]}
Probab=33.72 E-value=15 Score=15.81 Aligned_cols=31 Identities=3% Similarity=0.088 Sum_probs=25.8
Q ss_pred EEECCCCCHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 1631699889999999998399999999740
Q gi|254780564|r 39 GIAESSKKKSVATQFLRFLLLPIVQQYIATA 69 (107)
Q Consensus 39 gI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~ 69 (107)
..-+.-+|++..++|++-+.|+++|+++.+.
T Consensus 202 ~~~~~~~n~e~v~~~~~a~~~~e~~~~i~~~ 232 (255)
T d1p99a_ 202 AVNDKDLDNKTYAKIVELYHSKEAQKALQED 232 (255)
T ss_dssp EEEGGGTTCHHHHHHHHHHHSHHHHHHHHHH
T ss_pred EECCHHHCCHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 9682252989999999997599999999866
No 21
>d2v3qa1 c.94.1.1 (A:1-376) PstS-like phosphate-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.51 E-value=14 Score=16.07 Aligned_cols=33 Identities=9% Similarity=-0.050 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHC--HHHHHHHHHHCCCCHHCCCC
Q ss_conf 88999999999839--99999997400210010687
Q gi|254780564|r 46 KKSVATQFLRFLLL--PIVQQYIATALGEYPIIKGI 79 (107)
Q Consensus 46 n~~~A~kfiefLlS--~e~Q~~~a~~~~eyPv~~gV 79 (107)
...+.++||+|+++ +++|++ +....-.|+=+.+
T Consensus 312 ~~~~vk~Fl~~~l~~~~~gq~~-~~~~GyvPLp~~~ 346 (376)
T d2v3qa1 312 QTGQVRDFFTKHYGTSANNDAA-IEANAFVPLPSNW 346 (376)
T ss_dssp HHHHHHHHHHHHTCSSSSSHHH-HHHTTCBCCCHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHH-HHHCCCEECCHHH
T ss_conf 1599999999986055325788-9978974399999
Done!