RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780564|ref|YP_003064977.1| hypothetical protein CLIBASIA_02255 [Candidatus Liberibacter asiaticus str. psy62] (107 letters) >gnl|CDD|33896 COG4143, TbpA, ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]. Length = 336 Score = 37.2 bits (86), Expect = 0.001 Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78 G+ L + + +K +A +FL+F+L P Q I T YP +K Sbjct: 247 GHYLQVEGAAVLKGAKNPELADKFLQFMLSPEFQDAIPTTNWMYPAVKN 295 >gnl|CDD|31031 COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]. Length = 363 Score = 30.8 bits (69), Expect = 0.073 Identities = 17/55 (30%), Positives = 25/55 (45%) Query: 24 FLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78 F+ G+IL I + +K A +F+ FLL P V +A +G P K Sbjct: 259 FVIPKEGSILWFDNLAIPKGAKNVDAAYKFINFLLDPEVAAKLAEFVGYAPPNKA 313 >gnl|CDD|34879 COG5282, COG5282, Uncharacterized conserved protein [Function unknown]. Length = 359 Score = 27.3 bits (60), Expect = 0.90 Identities = 9/43 (20%), Positives = 18/43 (41%) Query: 15 SEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFL 57 EV Y P LP G + +A +++ ++F ++ Sbjct: 130 REVLGQYDPGLPAGPGGLAAVLPNAVAVAAQLLVQPSEFRTWI 172 >gnl|CDD|32727 COG2902, COG2902, NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]. Length = 1592 Score = 25.7 bits (56), Expect = 2.6 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 3/58 (5%) Query: 51 TQFLRFLLLPIVQQYIATALGEYPIIKGIITN---RKFNDQTYTNRESFELIKTAQNP 105 ++L+ P Q YI L ++P I + + +F+ + ++ E + Sbjct: 658 ARYLQQAGFPYSQSYIEATLNKHPDIARSLVDLFDARFDPSIKDSNKAAEALLDKIEE 715 >gnl|CDD|31492 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]. Length = 415 Score = 25.1 bits (55), Expect = 4.3 Identities = 10/40 (25%), Positives = 18/40 (45%) Query: 32 ILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALG 71 + + V GIA K + + L+ +V +A A+G Sbjct: 54 VFFTLVLGIASLGDLKKLGRLGGKTLIYFLVTTTLAIAIG 93 >gnl|CDD|38718 KOG3508, KOG3508, KOG3508, GTPase-activating protein [General function prediction only]. Length = 932 Score = 25.0 bits (54), Expect = 5.0 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 34 CSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYP 74 C G I S + S A+ FLRFL I+ + EYP Sbjct: 402 CKPRGRIDLSDRLVS-ASLFLRFLCPAILSPSLFNLAQEYP 441 >gnl|CDD|37607 KOG2396, KOG2396, KOG2396, HAT (Half-A-TPR) repeat-containing protein [General function prediction only]. Length = 568 Score = 24.6 bits (53), Expect = 5.9 Identities = 12/66 (18%), Positives = 17/66 (25%), Gaps = 7/66 (10%) Query: 25 LPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRK 84 L K+I + L S +A + L L +Q A K Sbjct: 247 LQKNIIDDLQS--KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSK-----ES 299 Query: 85 FNDQTY 90 Y Sbjct: 300 RCCAVY 305 >gnl|CDD|35556 KOG0335, KOG0335, KOG0335, ATP-dependent RNA helicase [RNA processing and modification]. Length = 482 Score = 24.1 bits (52), Expect = 9.6 Identities = 7/29 (24%), Positives = 17/29 (58%) Query: 31 NILCSTVGGIAESSKKKSVATQFLRFLLL 59 +IL +T G + + ++ ++ +FL+L Sbjct: 204 DILVATPGRLKDLIERGKISLDNCKFLVL 232 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.318 0.133 0.374 Gapped Lambda K H 0.267 0.0767 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,182,570 Number of extensions: 50679 Number of successful extensions: 115 Number of sequences better than 10.0: 1 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 11 Length of query: 107 Length of database: 6,263,737 Length adjustment: 74 Effective length of query: 33 Effective length of database: 4,664,671 Effective search space: 153934143 Effective search space used: 153934143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (23.3 bits)