RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780564|ref|YP_003064977.1| hypothetical protein CLIBASIA_02255 [Candidatus Liberibacter asiaticus str. psy62] (107 letters) >2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* Length = 346 Score = 44.0 bits (102), Expect = 7e-06 Identities = 18/107 (16%), Positives = 40/107 (37%) Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60 + S+ + +VS+ + + G + + G+ +++ + A FL +L Sbjct: 229 RLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAPNRDAAIAFLEYLASD 288 Query: 61 IVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107 Q+Y A EYP+I G+ + + + + P Sbjct: 289 DAQRYFAEGNNEYPVIPGVPIDPVLAAHGQLKGDPLNVSNLGRYQPD 335 >2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, periplasmic binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A Length = 334 Score = 43.1 bits (100), Expect = 1e-05 Identities = 13/67 (19%), Positives = 30/67 (44%) Query: 13 HHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGE 72 +V + G + + G+ +++ + A +F+ FL+ Q ++A E Sbjct: 229 KAIAENVGVFFPNQEGRGTHVNVSGVGVVKTAPNREGAVKFIEFLVSEPAQAFLAQNNYE 288 Query: 73 YPIIKGI 79 YP++ G+ Sbjct: 289 YPVLAGV 295 >3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} PDB: 1y4t_A Length = 322 Score = 41.9 bits (97), Expect = 4e-05 Identities = 19/97 (19%), Positives = 42/97 (43%) Query: 11 KNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATAL 70 K+ S+ + G + + + +SSK + A +F+ F+L P +Q+ + + Sbjct: 211 KDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSPEIQKILTDSN 270 Query: 71 GEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107 E+PI + ++ D + + K A+N + Sbjct: 271 YEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKE 307 >2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli} Length = 330 Score = 40.1 bits (92), Expect = 1e-04 Identities = 15/51 (29%), Positives = 25/51 (49%) Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80 G+ L V +SK+ +A +FL+F++ P Q I T YP+ + Sbjct: 242 GHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTL 292 >1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1 Length = 381 Score = 39.5 bits (91), Expect = 2e-04 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 7/108 (6%) Query: 6 SVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGG-----IAESSKKKSVATQFLRFLLLP 60 S+ K V P + KD GG A K K A +F ++L Sbjct: 231 SINDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTS 290 Query: 61 IVQQ-YIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107 +A LG P++ ++ + + + + ++ A PK Sbjct: 291 EESIKTLALELGYIPVLTKVLDDPEIKNDPVI-YGFGQAVQHAYLMPK 337 >3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Length = 355 Score = 38.7 bits (88), Expect = 3e-04 Identities = 9/71 (12%), Positives = 24/71 (33%) Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89 ++ S +G + E++ + ++L F + Q +A L + + N Sbjct: 257 YTVVMSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQLQIPAVSPEVAGENTANTMQ 316 Query: 90 YTNRESFELIK 100 + + Sbjct: 317 AIHGAQLRPVP 327 >1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A Length = 320 Score = 38.1 bits (87), Expect = 5e-04 Identities = 18/84 (21%), Positives = 32/84 (38%) Query: 24 FLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNR 83 F + G + IA+ S K+ A + + +L Q A EYP+ +GI + Sbjct: 220 FPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSA 279 Query: 84 KFNDQTYTNRESFELIKTAQNPPK 107 ++ +L A+N Sbjct: 280 IVKGWGTFKSDTIKLEDIAKNYEA 303 >1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 1qvs_A 2o6a_A 2o68_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A Length = 309 Score = 37.8 bits (86), Expect = 6e-04 Identities = 13/75 (17%), Positives = 32/75 (42%) Query: 8 AIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIA 67 + + +D G ++ + + ++SK ++ A +F+ FL Q+ + Sbjct: 200 LAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLASKKGQEALV 259 Query: 68 TALGEYPIIKGIITN 82 A EYP+ +++ Sbjct: 260 AARAEYPLRADVVSP 274 >1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A Length = 323 Score = 37.9 bits (86), Expect = 6e-04 Identities = 18/89 (20%), Positives = 35/89 (39%) Query: 19 VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78 V T KD G + + +A + K+ A + L +L+ Q A A EYP+ G Sbjct: 223 VRPTFATAKDGGTHVNISGAAVAAHAPNKANAVKLLEYLVSEPAQTLYAQANYEYPVRAG 282 Query: 79 IITNRKFNDQTYTNRESFELIKTAQNPPK 107 + + ++ + + A+ + Sbjct: 283 VKLDAVVASFGPLKVDTLPVAEIAKYRKQ 311 >1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A* Length = 312 Score = 35.8 bits (81), Expect = 0.002 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 1/83 (1%) Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60 V K + F +D G + + GG+ SSK A +F++++ Sbjct: 196 YHYYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWITGK 255 Query: 61 IVQQYIATALG-EYPIIKGIITN 82 Q + T EY + +N Sbjct: 256 SGQDILRTNNAFEYAVGVDAASN 278 >3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A Length = 354 Score = 34.7 bits (78), Expect = 0.006 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 1/82 (1%) Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60 + A ++ + + V + + I +++ +AT+F+ LL Sbjct: 261 LPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAENSELATEFVALLLGE 320 Query: 61 IVQQYIATALGEYPIIKGIITN 82 QQ G+ PI+ I Sbjct: 321 TGQQIFI-ENGQPPIVPAIAEG 341 >2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A* Length = 416 Score = 33.2 bits (75), Expect = 0.015 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 1/63 (1%) Query: 44 SKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQ 103 K + +F+ FL+ Q+ + E P + + + T + K Q Sbjct: 308 VKNLEASQKFVDFLVATEQQKVLYDKTNEIPANTEARSYAEGKNDELT-TAVIKQFKNTQ 366 Query: 104 NPP 106 P Sbjct: 367 PLP 369 >3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A Length = 295 Score = 32.9 bits (73), Expect = 0.016 Identities = 8/57 (14%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 19 VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPI 75 V K++ I ++++ + +A +F++ ++ Q+ + G+ P+ Sbjct: 240 VKVVLANGKEVTGKPIVYGITIPKNAENRELAVEFVKLVISEEGQEILREL-GQEPL 295 >2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A Length = 401 Score = 32.8 bits (73), Expect = 0.019 Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 43 SSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGI 79 ++K A F+ ++ P V Q G I+G+ Sbjct: 301 TTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGV 337 >3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Methanosarcina acetivorans} Length = 296 Score = 32.2 bits (71), Expect = 0.029 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Query: 19 VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPI 75 V + + I +++ +AT+F+ LL QQ G+ PI Sbjct: 241 VQVEMVNGEVVTGSPIVYGVTIPNNAENSELATEFVALLLGETGQQIFI-ENGQPPI 296 >3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A Length = 296 Score = 30.6 bits (67), Expect = 0.095 Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 11 KNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATAL 70 + + ++S++ + V + + + + VA +FLR+LL ++ Sbjct: 234 EKFYGQISITLGSTGKTIKAKPIVYGVT-VLKDAPNREVAIEFLRYLLSENGKRIFEKNH 292 Query: 71 GEY 73 ++ Sbjct: 293 QDF 295 >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A 2e5e_A Length = 581 Score = 30.1 bits (67), Expect = 0.14 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 5/57 (8%) Query: 24 FLPKDIGNILCSTVGG----IAESSKKKSVATQFLRFLLL-PIVQQYIATALGEYPI 75 LP G VG I +S K +A +FL LL + + + Sbjct: 246 VLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV 302 >3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli} PDB: 1mg1_A* Length = 568 Score = 29.2 bits (65), Expect = 0.22 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 5/57 (8%) Query: 24 FLPKDIGNILCSTVGG----IAESSKKKSVATQFLRFLLL-PIVQQYIATALGEYPI 75 LP G VG I +S K +A +FL LL + + + Sbjct: 246 VLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV 302 >1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1 Length = 231 Score = 28.5 bits (62), Expect = 0.38 Identities = 10/45 (22%), Positives = 17/45 (37%) Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYP 74 I +S+ +K+ A QF+ ++ P I A P Sbjct: 186 YYEPIVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGYVLP 230 >2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A* Length = 237 Score = 28.0 bits (61), Expect = 0.52 Identities = 2/29 (6%), Positives = 7/29 (24%) Query: 39 GIAESSKKKSVATQFLRFLLLPIVQQYIA 67 + F+ +L ++ Sbjct: 197 NVIAKEGASKETQDFIAYLSSKEAKEIFK 225 >3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12} Length = 658 Score = 28.2 bits (62), Expect = 0.52 Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 4/109 (3%) Query: 1 MINASSVAIFKNHHSEVSVSYTPFLP-KDIGNILCSTVGGIAESSKKKSVATQFLRFLLL 59 + + + V+ P + + GI +S K +A +FL LL Sbjct: 226 INGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLL 285 Query: 60 -PIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107 + + + D + E + + P Sbjct: 286 TDEGLEAVNKDKPLGAVALKSYEEELAKDPRI--AATMENAQKGEIMPN 332 >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805 Score = 27.7 bits (61), Expect = 0.66 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 5/56 (8%) Query: 25 LPKDIGNILCSTVGG----IAESSKKKSVATQFLRFLLL-PIVQQYIATALGEYPI 75 LP G VG I +S K +A +FL LL + + + Sbjct: 251 LPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV 306 >3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii} Length = 292 Score = 27.1 bits (58), Expect = 0.93 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 3/53 (5%) Query: 23 PFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPI 75 K I + ++ K A +F++F+L + G+ I Sbjct: 243 IAKNKTINAKPIVYGMTVPTNAPHKKEAIEFVKFVLGH---PEVLENNGQPAI 292 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.8 bits (59), Expect = 1.3 Identities = 16/105 (15%), Positives = 25/105 (23%), Gaps = 60/105 (57%) Query: 12 NHHSEVSVSYTPFLPKD----IG------NILCSTVGGIAES------------------ 43 N H LP I N+ V G +S Sbjct: 357 NSH----------LPAGKQVEISLVNGAKNL---VVSGPPQSLYGLNLTLRKAKAPSGLD 403 Query: 44 ------SKKK-SVATQFLRFLLLPIV----QQYIATALGEYPIIK 77 S++K + +F LP+ + A +I Sbjct: 404 QSRIPFSERKLKFSNRF-----LPVASPFHSHLLVPA---SDLIN 440 Score = 25.3 bits (55), Expect = 3.5 Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 37/131 (28%) Query: 2 INASSVAIFKNHHSEVSVSYTPFLPKDIG-----------NILCSTVGGIAESSKKKSV- 49 ++A S H + +P IL G A + + Sbjct: 1 MDAYSTRPLTLSHGSLEHVLL--VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58 Query: 50 --ATQFLRFLLLPIVQQYIATALGEYPIIKGIITN---RKF--------------NDQTY 90 +FL ++ + +G++ + + + + Sbjct: 59 ELVGKFLGYVSSLVEPS----KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114 Query: 91 TNRESFELIKT 101 T ++ ELIK Sbjct: 115 TLVKTKELIKN 125 Score = 24.5 bits (53), Expect = 5.4 Identities = 23/83 (27%), Positives = 27/83 (32%), Gaps = 39/83 (46%) Query: 9 IFK--NHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQF----LRFL----- 57 IFK N HS SYT F S K ATQF L + Sbjct: 1706 IFKEINEHS---TSYT-F-----------------RSEKGLLSATQFTQPALTLMEKAAF 1744 Query: 58 -------LLPIVQQYIATALGEY 73 L+P + +LGEY Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEY 1767 >1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} SCOP: c.94.1.1 PDB: 1wod_A Length = 233 Score = 25.0 bits (53), Expect = 4.2 Identities = 3/30 (10%), Positives = 6/30 (20%) Query: 38 GGIAESSKKKSVATQFLRFLLLPIVQQYIA 67 + F +L P + Sbjct: 197 PVAVVEGHNNATVKAFYDYLKGPQAAEIFK 226 >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414 Score = 24.6 bits (53), Expect = 5.8 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 20/82 (24%) Query: 3 NASSVAIFKNHHSEVS-VSYTPFLP------------KDIGNILCSTVGGIAESSKKKSV 49 +A +A F N H V V Y P+LP G ++ + + +K++ Sbjct: 287 SAQRIAEFLNGHPSVRWVRY-PYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQR-- 343 Query: 50 ATQFLRFLLLPIVQQYIATALG 71 A + L + L I+ LG Sbjct: 344 AFEVLDKMRLI----DISNNLG 361 >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Length = 337 Score = 24.5 bits (52), Expect = 6.5 Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 5/24 (20%) Query: 8 AIFKNHHSEVSVSYTPFLPKDIGN 31 K ++ P LP+ G Sbjct: 317 GDKKG-----NLYANPILPERFGR 335 >3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} Length = 508 Score = 24.1 bits (52), Expect = 8.9 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 6 SVAIFKNHHSEVSVSYTP--FLPKDIGNILCSTVGGIAESSKKKSVAT-QFLRFLLLPIV 62 S +++K S + + TP + + L T+ G+ ++ +A+ F +FL V Sbjct: 12 STSLYKKAGSAMEATPTPADLFSE---DYLVDTLDGLTVDDQQAVLASLSFSKFLKHAKV 68 Query: 63 QQYIATA 69 + + A A Sbjct: 69 RDWCAQA 75 >2hqy_A Conserved hypothetical protein; PSI2, MAD, structural genomics, protein structure initiative; HET: COA; 1.80A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.108.1.4 d.108.1.4 Length = 305 Score = 23.7 bits (51), Expect = 9.8 Identities = 9/26 (34%), Positives = 10/26 (38%) Query: 71 GEYPIIKGIITNRKFNDQTYTNRESF 96 G Y +I NR Y NRE Sbjct: 244 GAYAMINYEFANRIPEQYIYINREED 269 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.133 0.374 Gapped Lambda K H 0.267 0.0514 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 804,567 Number of extensions: 29484 Number of successful extensions: 79 Number of sequences better than 10.0: 1 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 34 Length of query: 107 Length of database: 5,693,230 Length adjustment: 71 Effective length of query: 36 Effective length of database: 3,971,906 Effective search space: 142988616 Effective search space used: 142988616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.5 bits)