Query gi|254780565|ref|YP_003064978.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 69
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 09:11:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780565.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g3pa2 b.37.1.1 (A:91-217) N- 13.0 32 0.0023 14.6 1.1 26 22-47 84-109 (127)
2 d2icha1 b.176.1.1 (A:24-351) A 8.5 15 0.0011 16.4 -1.9 34 3-36 272-311 (328)
3 d2cs7a1 d.9.2.1 (A:0-54) Pneum 6.5 83 0.0061 12.4 1.1 20 8-31 36-55 (55)
4 d2nlva1 d.326.1.1 (A:1-111) Hy 5.5 69 0.005 12.9 0.2 24 5-28 85-108 (111)
5 d2nwva1 d.326.1.1 (A:2-113) Hy 5.0 77 0.0056 12.6 0.2 23 5-27 86-108 (112)
6 d2nqda1 b.1.26.1 (A:3-110) Cha 4.9 54 0.0039 13.4 -0.7 12 24-35 86-97 (108)
7 d2c34a1 b.1.26.1 (A:1-113) Inh 4.9 54 0.004 13.4 -0.7 11 24-34 91-101 (113)
8 d1qwza_ b.100.1.1 (A:) Sortase 4.6 97 0.007 12.1 0.5 35 4-39 64-101 (235)
9 d1prtf_ b.40.2.1 (F:) Pertussi 4.2 98 0.0071 12.1 0.3 11 10-20 66-76 (98)
10 d1exta2 g.24.1.1 (A:72-115) Tu 4.0 51 0.0037 13.6 -1.3 11 23-33 30-40 (44)
No 1
>d1g3pa2 b.37.1.1 (A:91-217) N-terminal domains of the minor coat protein g3p {Bacteriophage M13 [TaxId: 10870]}
Probab=12.99 E-value=32 Score=14.60 Aligned_cols=26 Identities=27% Similarity=0.774 Sum_probs=19.2
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHCCH
Q ss_conf 37777762553114661001120023
Q gi|254780565|r 22 TRLYRRYWEGEYKTSGRVSSFKKSSF 47 (69)
Q Consensus 22 trlyrrywegeyktsgrvssfkkssf 47 (69)
..+|..||.|.+....--|.|...-|
T Consensus 84 kamydaywngkfrdcafhsgfnedif 109 (127)
T d1g3pa2 84 KAMYDAYWNGKFRDCAFHSGFNEDIF 109 (127)
T ss_dssp HHHHHHHHTTTTTTTSCCCSSCCCCE
T ss_pred HHHHHHHHCCCCCCCEECCCCCCCEE
T ss_conf 77777774574112300057776358
No 2
>d2icha1 b.176.1.1 (A:24-351) AttH-related protein NE1406 {Nitrosomonas europaea [TaxId: 915]}
Probab=8.51 E-value=15 Score=16.36 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=20.1
Q ss_pred CCEECCCHHHCCEE--EEHHHHHH----HHHHHCCCCCCC
Q ss_conf 32002662240100--00013377----777625531146
Q gi|254780565|r 3 QTRLSIPKSRMNLA--VEDKETRL----YRRYWEGEYKTS 36 (69)
Q Consensus 3 qtrlsipksrmnla--vedketrl----yrrywegeykts 36 (69)
+-|+.||+-.+++. ++|.|-.. -..||||--+.+
T Consensus 272 ~W~i~~p~~~l~i~~~~~~QEl~~~~~~~~~YWEG~v~v~ 311 (328)
T d2icha1 272 ATRVLTGETEWQITPLMDDQELDSRASAGAVYWEGAVTFT 311 (328)
T ss_dssp EEEEEETTEEEEEEESCSCCEEECTTBTCCEEEEEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 7898458840799765645364534576842365038990
No 3
>d2cs7a1 d.9.2.1 (A:0-54) Pneumococcal histidine triad protein A, PhtA {Streptococcus pneumoniae [TaxId: 1313]}
Probab=6.52 E-value=83 Score=12.43 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=13.4
Q ss_pred CCHHHCCEEEEHHHHHHHHHHHCC
Q ss_conf 662240100000133777776255
Q gi|254780565|r 8 IPKSRMNLAVEDKETRLYRRYWEG 31 (69)
Q Consensus 8 ipksrmnlavedketrlyrryweg 31 (69)
|||+.+ ...|-..-+.||.|
T Consensus 36 I~~~dL----s~~e~~~A~~~l~g 55 (55)
T d2cs7a1 36 IPKNEL----SASELAAAEAFLSG 55 (55)
T ss_dssp EEGGGS----CHHHHHHHHHHHHC
T ss_pred CCHHHC----CHHHHHHHHHHHCC
T ss_conf 655668----99999999998539
No 4
>d2nlva1 d.326.1.1 (A:1-111) Hypothetical protein Ava3825 {Anabaena variabilis [TaxId: 1172]}
Probab=5.49 E-value=69 Score=12.87 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=18.7
Q ss_pred EECCCHHHCCEEEEHHHHHHHHHH
Q ss_conf 002662240100000133777776
Q gi|254780565|r 5 RLSIPKSRMNLAVEDKETRLYRRY 28 (69)
Q Consensus 5 rlsipksrmnlavedketrlyrry 28 (69)
+..|||+..-|+....+.|-|.-|
T Consensus 85 ~~GVPk~dIVLgFh~P~~R~~T~f 108 (111)
T d2nlva1 85 MMGVPREDIVLGLQAPYKRQYTDY 108 (111)
T ss_dssp HTTCCGGGEEETTSCGGGGGGSSS
T ss_pred HCCCCHHHEEEECCCCCCCCCCCC
T ss_conf 849988998994068230367760
No 5
>d2nwva1 d.326.1.1 (A:2-113) Hypothetical protein Ava3320 {Anabaena variabilis [TaxId: 1172]}
Probab=5.00 E-value=77 Score=12.60 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=17.7
Q ss_pred EECCCHHHCCEEEEHHHHHHHHH
Q ss_conf 00266224010000013377777
Q gi|254780565|r 5 RLSIPKSRMNLAVEDKETRLYRR 27 (69)
Q Consensus 5 rlsipksrmnlavedketrlyrr 27 (69)
+..|||+..-|+....+.|-|.-
T Consensus 86 ~~GVPk~dIVLgFh~P~~R~~T~ 108 (112)
T d2nwva1 86 RLGVTNNDIVLAFHPPDVRKFTD 108 (112)
T ss_dssp HTTCCGGGEEETTSCGGGGGGSS
T ss_pred HCCCCHHHEEEEECCCCCCCCCC
T ss_conf 84998899899406833136776
No 6
>d2nqda1 b.1.26.1 (A:3-110) Chagasin {Trypanosoma cruzi [TaxId: 5693]}
Probab=4.91 E-value=54 Score=13.43 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=8.1
Q ss_pred HHHHHHCCCCCC
Q ss_conf 777762553114
Q gi|254780565|r 24 LYRRYWEGEYKT 35 (69)
Q Consensus 24 lyrrywegeykt 35 (69)
.|+|-||++-..
T Consensus 86 ~Y~RpWe~~~~~ 97 (108)
T d2nqda1 86 TYMRPWTGPSHD 97 (108)
T ss_dssp EEECTTTCCCTT
T ss_pred EEECCCCCCCCC
T ss_conf 997898999885
No 7
>d2c34a1 b.1.26.1 (A:1-113) Inhibitor of cysteine peptidases, ICP {Leishmania mexicana [TaxId: 5665]}
Probab=4.87 E-value=54 Score=13.41 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=7.7
Q ss_pred HHHHHHCCCCC
Q ss_conf 77776255311
Q gi|254780565|r 24 LYRRYWEGEYK 34 (69)
Q Consensus 24 lyrrywegeyk 34 (69)
.|+|-||++-.
T Consensus 91 ~Y~RpWe~~~~ 101 (113)
T d2c34a1 91 VYTRPFEGIKP 101 (113)
T ss_dssp EEEBTTTBCCT
T ss_pred EEECCCCCCCC
T ss_conf 99688689988
No 8
>d1qwza_ b.100.1.1 (A:) Sortase B {Staphylococcus aureus [TaxId: 1280]}
Probab=4.57 E-value=97 Score=12.09 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=24.6
Q ss_pred CEECCCHHHCCEEE---EHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 20026622401000---0013377777625531146610
Q gi|254780565|r 4 TRLSIPKSRMNLAV---EDKETRLYRRYWEGEYKTSGRV 39 (69)
Q Consensus 4 trlsipksrmnlav---edketrlyrrywegeyktsgrv 39 (69)
-.|.||...+++.| +|.+. ..++-.+|+|-.+|.+
T Consensus 64 gwi~Ip~t~I~yPVvqg~dn~~-YL~~~~~~~~~~~Gsi 101 (235)
T d1qwza_ 64 GWIKLSGTSLNYPVLQGKTNHD-YLNLDFEREHRRKGSI 101 (235)
T ss_dssp EEEECTTSSCEEEEECCSSSST-TTSBCTTSCBCTTCCE
T ss_pred EEEEECCCCCCEEEEECCCCHH-HHHCCCCCCCCCCCCE
T ss_conf 9999899765234786798278-8864458765767855
No 9
>d1prtf_ b.40.2.1 (F:) Pertussis toxin S5 subunit {Bordetella pertussis [TaxId: 520]}
Probab=4.21 E-value=98 Score=12.06 Aligned_cols=11 Identities=64% Similarity=0.869 Sum_probs=5.3
Q ss_pred HHHCCEEEEHH
Q ss_conf 22401000001
Q gi|254780565|r 10 KSRMNLAVEDK 20 (69)
Q Consensus 10 ksrmnlavedk 20 (69)
|||..|.|||.
T Consensus 66 ksrialtveds 76 (98)
T d1prtf_ 66 KSRIALTVEDS 76 (98)
T ss_dssp TCCEEEEECCC
T ss_pred HHCEEEEECCC
T ss_conf 51068884278
No 10
>d1exta2 g.24.1.1 (A:72-115) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.04 E-value=51 Score=13.56 Aligned_cols=11 Identities=36% Similarity=1.032 Sum_probs=7.2
Q ss_pred HHHHHHHCCCC
Q ss_conf 77777625531
Q gi|254780565|r 23 RLYRRYWEGEY 33 (69)
Q Consensus 23 rlyrrywegey 33 (69)
.-||+||..++
T Consensus 30 NQyq~y~~e~~ 40 (44)
T d1exta2 30 NQYRHYWSENL 40 (44)
T ss_dssp TEEEEEEETTE
T ss_pred HHHHHHHCCCC
T ss_conf 05566403431
Done!