RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780565|ref|YP_003064978.1| hypothetical protein
CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62]
         (69 letters)



>gnl|CDD|112611 pfam03806, ABG_transport, AbgT putative transporter family. 
          Length = 502

 Score = 26.6 bits (59), Expect = 1.7
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 45  SSFGFYIVMLLSFFAGVLVSFFG 67
           SS G YIV+  +FFA   V+ F 
Sbjct: 336 SSMGTYIVI--AFFAAQFVAMFN 356


>gnl|CDD|35180 COG5621, COG5621, Predicted secreted hydrolase [General function
           prediction only].
          Length = 354

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 5   RLSIPKSRMNLAV----EDKETRLYRRYWEGEYKTSGRVS 40
            + IP   +N+      E+        YWEG  + SG  S
Sbjct: 305 EVKIPSRGLNVKTAALDENAWMATSIPYWEGPIELSGPTS 344


>gnl|CDD|34875 COG5278, COG5278, Predicted periplasmic ligand-binding sensor
          domain [Signal transduction mechanisms].
          Length = 207

 Score = 25.7 bits (56), Expect = 3.2
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 37 GRVSSFKKSSFGFYIVMLLSFFAGVLVSFFGLI 69
           R+   KK    F I +LL   A    S++ + 
Sbjct: 3  KRMPIRKKIILSFVIGVLLLLLASG-ASYWSIQ 34


>gnl|CDD|145511 pfam02405, DUF140, Domain of unknown function DUF140.  This
          domain has no known function nor do any of the proteins
          that possess it. The aligned region is approximately
          150 amino acids long.
          Length = 215

 Score = 23.9 bits (53), Expect = 9.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 51 IVMLLSFFAGVLVSFFGLI 69
          IV L +FF G +++  G  
Sbjct: 17 IVALTAFFIGAVLALQGAY 35


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.326    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 802,778
Number of extensions: 32266
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 22
Length of query: 69
Length of database: 6,263,737
Length adjustment: 40
Effective length of query: 29
Effective length of database: 5,399,377
Effective search space: 156581933
Effective search space used: 156581933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)