RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780565|ref|YP_003064978.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62] (69 letters) >d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Score = 28.7 bits (63), Expect = 0.13 Identities = 7/56 (12%), Positives = 18/56 (32%) Query: 14 NLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAGVLVSFFGLI 69 + + + +G ++S K + Y+ + VL + F + Sbjct: 66 QAWTNGSQLAIQAQPAGNGKSYNGIITSKNKIQYPVYMEIKAKIMDQVLANAFWTL 121 >d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 119 Score = 24.0 bits (51), Expect = 3.5 Identities = 4/19 (21%), Positives = 9/19 (47%) Query: 37 GRVSSFKKSSFGFYIVMLL 55 G +S + G +I++ Sbjct: 100 GEMSGPVFTDSGIHIILRT 118 >d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]} Length = 92 Score = 23.8 bits (51), Expect = 4.0 Identities = 4/19 (21%), Positives = 10/19 (52%) Query: 37 GRVSSFKKSSFGFYIVMLL 55 + + FG++I+ +L Sbjct: 71 LEPTGPLHTQFGYHIIKVL 89 >d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 108 Score = 23.2 bits (49), Expect = 5.9 Identities = 8/19 (42%), Positives = 15/19 (78%) Query: 37 GRVSSFKKSSFGFYIVMLL 55 G++S+ SSFG++++ LL Sbjct: 85 GQMSAPVHSSFGWHLIELL 103 >d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]} Length = 96 Score = 23.1 bits (49), Expect = 6.0 Identities = 5/26 (19%), Positives = 10/26 (38%) Query: 30 EGEYKTSGRVSSFKKSSFGFYIVMLL 55 K+ FG++I+M+ Sbjct: 68 VSGMDKPVFTDPPVKTKFGYHIIMVE 93 >d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120 Score = 23.2 bits (49), Expect = 6.3 Identities = 4/20 (20%), Positives = 9/20 (45%) Query: 37 GRVSSFKKSSFGFYIVMLLS 56 G +S + G +I+ + Sbjct: 101 GDISDIVDTDSGVHIIKRTA 120 >d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 103 Score = 23.2 bits (49), Expect = 6.7 Identities = 5/19 (26%), Positives = 10/19 (52%) Query: 37 GRVSSFKKSSFGFYIVMLL 55 G + +S GF+I+ + Sbjct: 82 GDIVGPIRSGVGFHILKVN 100 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.326 0.138 0.399 Gapped Lambda K H 0.267 0.0486 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 236,794 Number of extensions: 8001 Number of successful extensions: 18 Number of sequences better than 10.0: 1 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 8 Length of query: 69 Length of database: 2,407,596 Length adjustment: 37 Effective length of query: 32 Effective length of database: 1,899,586 Effective search space: 60786752 Effective search space used: 60786752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 47 (22.5 bits)