RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780565|ref|YP_003064978.1| hypothetical protein
CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62]
         (69 letters)



>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans
           [TaxId: 63186]}
          Length = 270

 Score = 28.7 bits (63), Expect = 0.13
 Identities = 7/56 (12%), Positives = 18/56 (32%)

Query: 14  NLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAGVLVSFFGLI 69
                  +  +  +        +G ++S  K  +  Y+ +       VL + F  +
Sbjct: 66  QAWTNGSQLAIQAQPAGNGKSYNGIITSKNKIQYPVYMEIKAKIMDQVLANAFWTL 121


>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 119

 Score = 24.0 bits (51), Expect = 3.5
 Identities = 4/19 (21%), Positives = 9/19 (47%)

Query: 37  GRVSSFKKSSFGFYIVMLL 55
           G +S    +  G +I++  
Sbjct: 100 GEMSGPVFTDSGIHIILRT 118


>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli
          [TaxId: 562]}
          Length = 92

 Score = 23.8 bits (51), Expect = 4.0
 Identities = 4/19 (21%), Positives = 10/19 (52%)

Query: 37 GRVSSFKKSSFGFYIVMLL 55
             +    + FG++I+ +L
Sbjct: 71 LEPTGPLHTQFGYHIIKVL 89


>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains
           {Escherichia coli [TaxId: 562]}
          Length = 108

 Score = 23.2 bits (49), Expect = 5.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 37  GRVSSFKKSSFGFYIVMLL 55
           G++S+   SSFG++++ LL
Sbjct: 85  GQMSAPVHSSFGWHLIELL 103


>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14
          [TaxId: 9606]}
          Length = 96

 Score = 23.1 bits (49), Expect = 6.0
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 30 EGEYKTSGRVSSFKKSSFGFYIVMLL 55
                        K+ FG++I+M+ 
Sbjct: 68 VSGMDKPVFTDPPVKTKFGYHIIMVE 93


>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 120

 Score = 23.2 bits (49), Expect = 6.3
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 37  GRVSSFKKSSFGFYIVMLLS 56
           G +S    +  G +I+   +
Sbjct: 101 GDISDIVDTDSGVHIIKRTA 120


>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains
           {Escherichia coli [TaxId: 562]}
          Length = 103

 Score = 23.2 bits (49), Expect = 6.7
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 37  GRVSSFKKSSFGFYIVMLL 55
           G +    +S  GF+I+ + 
Sbjct: 82  GDIVGPIRSGVGFHILKVN 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 236,794
Number of extensions: 8001
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 8
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)