BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780565|ref|YP_003064978.1| hypothetical protein
CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62]
         (69 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780565|ref|YP_003064978.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 69

 Score =  139 bits (349), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60
          MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG
Sbjct: 1  MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60

Query: 61 VLVSFFGLI 69
          VLVSFFGLI
Sbjct: 61 VLVSFFGLI 69


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 884

 Score = 23.9 bits (50), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 4/26 (15%)

Query: 21 ETRLYRRYWEGEYKTSGRVSSFKKSS 46
          ETR  R Y +GE K    VS F+KSS
Sbjct: 48 ETRKRRSYVQGEEK----VSVFRKSS 69


>gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 609

 Score = 21.2 bits (43), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 6   LSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFK 43
           + +P + ++   +D+  RLYR+    +   +GR S  K
Sbjct: 145 VDVPYNPIDSLWKDRPQRLYRKVAMQDMAYAGRESQEK 182


>gi|254780485|ref|YP_003064898.1| biotin synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 328

 Score = 21.2 bits (43), Expect = 3.9,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 1   MSQTRLSIPKSRMNLA 16
           +S  R+ +PKSR+ LA
Sbjct: 259 ISVARILMPKSRLRLA 274


>gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score = 20.4 bits (41), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 26  RRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSF 57
           RR W  +    G  +SF KSS   Y V+ + +
Sbjct: 182 RRDWSEKIWKWGEETSFLKSSDAKYHVVCIDY 213


>gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 221

 Score = 20.4 bits (41), Expect = 6.5,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 37  GRVSSFKKSSFGFYIVMLL 55
           GR++SF ++  G YI+ ++
Sbjct: 82  GRITSFVETDDGHYIMTVI 100


>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 292

 Score = 20.0 bits (40), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 10  KSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYI 51
           ++R+ L V   E   YR  +  E +    +  F  S +G Y+
Sbjct: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYL 282


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.138    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,548
Number of Sequences: 1233
Number of extensions: 1186
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 69
length of database: 328,796
effective HSP length: 40
effective length of query: 29
effective length of database: 279,476
effective search space:  8104804
effective search space used:  8104804
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.2 bits)
S2: 31 (16.5 bits)