HHsearch alignment for GI: 254780567 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=97.82 E-value=0.00065 Score=43.97 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=106.1
Q ss_pred CCCCCCCEEECCCHHH--HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHH-
Q ss_conf 6688454165361899--999998510167884999878777868899999986276------2013567644454666-
Q gi|254780567|r 36 LGISRDDLLVHSAIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILID- 106 (246)
Q Consensus 36 ~~~~~dnFiv~~~N~~--A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~------~~~~~~~~~~~~~~~~- 106 (246)
T Consensus 73 ~~~~~~~LI-G~~~~~~~~~eqik~~ap-~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eL 150 (403)
T COG1221 73 KSEALDDLI-GESPSLQELREQIKAYAP-SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAEL 150 (403)
T ss_pred CCHHHHHHH-CCCHHHHHHHHHHHHHCC-CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHHHHH
T ss_conf 221566663-568889999999986189-998479866887538899999998612135898799777773767777777
Q ss_pred ----------------------HHHHHHHHHHHCCCC-CCHHHHHHHHHH----------HCCCCCEEEEECCCCCCHHH
Q ss_conf ----------------------666533433210037-610335455543----------11234215640354320022
Q gi|254780567|r 107 ----------------------TRKPVLLEDIDLLDF-NDTQLFHIINSI----------HQYDSSLLMTARTFPVSWGV 153 (246)
Q Consensus 107 ----------------------~~~~i~iddi~~~~~-~ee~lf~l~n~~----------~~~~~~iilts~~~p~~~~~ 153 (246)
T Consensus 151 FG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~ 230 (403)
T COG1221 151 FGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVL 230 (403)
T ss_pred HCCCCCEEECCCCCCCCHHEECCCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf 32000000256678676420527977765636537985899999998718657668888867774045135668799987
Q ss_pred HHHHHHHHHHHCCEEEECCCCH--HHHHH----HHHHHHHHCCCCCC----HHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3456678852122245078897--89999----99998666289798----89999999406679899999999999999
Q gi|254780567|r 154 CLPDLCSRLKAATVVKISLPDD--DFLEK----VIVKMFADRQIFID----KKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 (246)
Q Consensus 154 ~l~DL~SRl~~g~~~~I~~pdd--e~~~~----il~k~~~~r~i~l~----~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~s 223 (246)
T Consensus 231 ~g~dl~~rl~-~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 231 AGADLTRRLN-ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHCCHHHHHC-CCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4052556416-754318972435555999999999999997399988888999999984889983999999999999973
Q ss_pred H
Q ss_conf 9
Q gi|254780567|r 224 L 224 (246)
Q Consensus 224 l 224 (246)
T Consensus 310 ~ 310 (403)
T COG1221 310 S 310 (403)
T ss_pred C
T ss_conf 5