HHsearch alignment for GI: 254780567 and conserved domain: COG1241

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair].
Probab=95.01  E-value=0.13  Score=29.73  Aligned_cols=178  Identities=15%  Similarity=0.139  Sum_probs=89.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH-CCCCHHHHHHH----------HHH----------HHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             49998787778688999999862-76201356764----------445----------4666666533433210037610
Q gi|254780567|r   66 VVILVGPSGSGKSCLANIWSDKS-RSTRFSNIAKS----------LDS----------ILIDTRKPVLLEDIDLLDFNDT  124 (246)
Q Consensus        66 ~l~i~G~~GsGKTHLl~a~~~~~-~~~~~~~~~~~----------~~~----------~~~~~~~~i~iddi~~~~~~ee  124 (246)
T Consensus       321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr  400 (682)
T COG1241         321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDR  400 (682)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEECCEEEEECCCEEEEEECCCCCHHHH
T ss_conf             69981798251999999988648840797264125457306999706776078867779992497799970567776789


Q ss_pred             HHHHH-------------HHHHHCCCCCEEEEECCC---------CCCHHHHHHHHHHHHHHCCEEEE-CCCC-HHHHH-
Q ss_conf             33545-------------554311234215640354---------32002234566788521222450-7889-78999-
Q gi|254780567|r  125 QLFHI-------------INSIHQYDSSLLMTARTF---------PVSWGVCLPDLCSRLKAATVVKI-SLPD-DDFLE-  179 (246)
Q Consensus       125 ~lf~l-------------~n~~~~~~~~iilts~~~---------p~~~~~~l~DL~SRl~~g~~~~I-~~pd-de~~~-  179 (246)
T Consensus       401 ~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~  480 (682)
T COG1241         401 VAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAE  480 (682)
T ss_pred             HHHHHHHHHCEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEECCCCCCCCHHHHHH
T ss_conf             99999987527512055425411144445665188777679999978855898357751775477057888533599999


Q ss_pred             HHHHHHH-----------------------------HHCC-C--CCCHHHHHHHHHCC----------------CCCHHH
Q ss_conf             9999986-----------------------------6628-9--79889999999406----------------679899
Q gi|254780567|r  180 KVIVKMF-----------------------------ADRQ-I--FIDKKLAAYIVQRM----------------ERSLVF  211 (246)
Q Consensus       180 ~il~k~~-----------------------------~~r~-i--~l~~~v~~yl~~r~----------------~Rs~~~  211 (246)
T Consensus       481 hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~Rq  560 (682)
T COG1241         481 HILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQ  560 (682)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf             99998634565322333322222346589999999987505896128999999999998765201223456754561999


Q ss_pred             HHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             999999999-99998477878899999998674
Q gi|254780567|r  212 AEKLVDKMD-NLALSRGMGITRSLAAEVLKETQ  243 (246)
Q Consensus       212 l~~~l~~Ld-~~sl~~kr~ITi~lvk~vL~~~~  243 (246)
T Consensus       561 LEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~  593 (682)
T COG1241         561 LESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD  593 (682)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             999999999988654447778899999999999