HHsearch alignment for GI: 254780567 and conserved domain: COG1466
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair].
Probab=97.79 E-value=0.0016 Score=41.60 Aligned_cols=105 Identities=19% Similarity=0.140 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 34215640354320022345667885212224507889789999999986662897988999999940667989999999
Q gi|254780567|r 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 (246)
Q Consensus 137 ~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l 216 (246)
T Consensus 105 ~~~~l~~~~~kl~~~~~~~k~~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei 183 (334)
T COG1466 105 TDLLLLVESNKLDKAKKLTKWLK-KLAKAVVVECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEI 183 (334)
T ss_pred CCEEEEEECCCCCHHHHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 86899996188752778789888-74447346625887788999999999991898899999999998588299999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 9999999984778788999999986741
Q gi|254780567|r 217 DKMDNLALSRGMGITRSLAAEVLKETQQ 244 (246)
Q Consensus 217 ~~Ld~~sl~~kr~ITi~lvk~vL~~~~~ 244 (246)
T Consensus 184 ~KL~l~~--~~~~I~~~~V~~~v~~~~~ 209 (334)
T COG1466 184 EKLALYA--GDKEITLEDVEEVVSDVAE 209 (334)
T ss_pred HHHHHHC--CCCCCCHHHHHHHHCCCCC
T ss_conf 9998747--8986679999999736455