HHsearch alignment for GI: 254780567 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=99.02 E-value=7e-09 Score=74.53 Aligned_cols=186 Identities=22% Similarity=0.253 Sum_probs=118.4
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCH-H-----------HHHHH--HHH
Q ss_conf 84541653618999999985-101678-84999878777868899999986276201-3-----------56764--445
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRF-S-----------NIAKS--LDS 102 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~-~-----------~~~~~--~~~ 102 (246)
T Consensus 14 ~F~ev-vGQe~--v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv 90 (515)
T COG2812 14 TFDDV-VGQEH--VVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV 90 (515)
T ss_pred CHHHH-CCCHH--HHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 07776-36489--9999999998084233365137777671049999999956889877772253166686514886410
Q ss_pred HHHH------------------------HHHHHHHHHHHCCCCCCHHHHHHHHHHHC----CCC-CEEEEECCCCCCHHH
Q ss_conf 4666------------------------66653343321003761033545554311----234-215640354320022
Q gi|254780567|r 103 ILID------------------------TRKPVLLEDIDLLDFNDTQLFHIINSIHQ----YDS-SLLMTARTFPVSWGV 153 (246)
Q Consensus 103 ~~~~------------------------~~~~i~iddi~~~~~~ee~lf~l~n~~~~----~~~-~iilts~~~p~~~~~ 153 (246)
T Consensus 91 iEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~------~afNALLKTLEEPP~hV~FIlATTe~~Ki-- 162 (515)
T COG2812 91 IEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK------QAFNALLKTLEEPPSHVKFILATTEPQKI-- 162 (515)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHH------HHHHHHHCCCCCCCCCEEEEEECCCCCCC--
T ss_conf 1136444548679999998724688666641899831876437------88888751113686674899853886768--
Q ss_pred HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 34566788521222450788978999999998666289798899999994066798999999999999999847787889
Q gi|254780567|r 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 (246)
Q Consensus 154 ~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~ 233 (246)
T Consensus 163 -p~TIlSRcq---~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~---~~~It~~ 235 (515)
T COG2812 163 -PNTILSRCQ---RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFG---EGEITLE 235 (515)
T ss_pred -CHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CCCCCHH
T ss_conf -404552122---022257999999999999987448754799999999982897456777899999706---7765699
Q ss_pred HHHHHHHHH
Q ss_conf 999999867
Q gi|254780567|r 234 LAAEVLKET 242 (246)
Q Consensus 234 lvk~vL~~~ 242 (246)
T Consensus 236 ~v~~~lG~~ 244 (515)
T COG2812 236 SVRDMLGLT 244 (515)
T ss_pred HHHHHHCCC
T ss_conf 999996887