HHsearch alignment for GI: 254780567 and conserved domain: COG2842
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only].
Probab=95.16 E-value=0.26 Score=27.93 Aligned_cols=201 Identities=16% Similarity=0.207 Sum_probs=108.2
Q ss_pred CCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHH-HHHHHHHHHHH--HHHH
Q ss_conf 87766884541653618999999985101678849998787778688999999862762013-56764445466--6666
Q gi|254780567|r 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILI--DTRK 109 (246)
Q Consensus 33 ~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~-~~~~~~~~~~~--~~~~ 109 (246)
T Consensus 64 q~~~~~~~~~~l~tkt~r~~~~~~~-~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 64 QAALEKLAPDFLETKTVRRIFFRTR-PASKTGSLVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHH
T ss_conf 3355546643203502476754205-555168547886332200689998653358641361588136788999999998
Q ss_pred H----------------HHH-HHHHCCCCC--CHHHHHHHHHH---HC-CCCCEEEEECCCC----CCHHHHHHHHHHHH
Q ss_conf 5----------------334-332100376--10335455543---11-2342156403543----20022345667885
Q gi|254780567|r 110 P----------------VLL-EDIDLLDFN--DTQLFHIINSI---HQ-YDSSLLMTARTFP----VSWGVCLPDLCSRL 162 (246)
Q Consensus 110 ~----------------i~i-ddi~~~~~~--ee~lf~l~n~~---~~-~~~~iilts~~~p----~~~~~~l~DL~SRl 162 (246)
T Consensus 143 ~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~prL~~~l~~~~~~~~rl~srv 222 (297)
T COG2842 143 AFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPRLFKVLRRPEDELSRLYSRV 222 (297)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCHHHHHHHHHHH
T ss_conf 74014216888899999997157652665032125868999999988750815998367688851664057899999875
Q ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHH
Q ss_conf 2122245078897899999999866628979889999999406679899999999999999984778-788999999
Q gi|254780567|r 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEV 238 (246)
Q Consensus 163 ~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~-ITi~lvk~v 238 (246)
T Consensus 223 ~v~~~~~~~~~d~d~~~~~~~~~l~~----~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~a~~~~~~~~~~~v~~~~ 295 (297)
T COG2842 223 RVGKLLGEKFPDADELAEIAALVLPT----EDELVLMQVIKETEGNIRRLDKILAGAVGTARSNGIKDIDKPVLQEV 295 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 66765533205368889999861763----26999999999600157689999860144544226532006899985