HHsearch alignment for GI: 254780567 and conserved domain: COG3284
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].
Probab=95.98 E-value=0.13 Score=29.77 Aligned_cols=178 Identities=16% Similarity=0.252 Sum_probs=100.7
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC----HHH--HHHHHHHHH---------H--
Q ss_conf 16536189999999851016788499987877786889999998627620----135--676444546---------6--
Q gi|254780567|r 43 LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR----FSN--IAKSLDSIL---------I-- 105 (246)
Q Consensus 43 Fiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~----~~~--~~~~~~~~~---------~-- 105 (246)
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~-~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga 394 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT-DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGA 394 (606)
T ss_pred CCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 45578899999999887624-78768538765568999999985365569837998503447764677744576564330
Q ss_pred --H---------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHC---------CCCCEEEEECCCCCCH---HHHHHHHHHH
Q ss_conf --6---------6665334332100376-1033545554311---------2342156403543200---2234566788
Q gi|254780567|r 106 --D---------TRKPVLLEDIDLLDFN-DTQLFHIINSIHQ---------YDSSLLMTARTFPVSW---GVCLPDLCSR 161 (246)
Q Consensus 106 --~---------~~~~i~iddi~~~~~~-ee~lf~l~n~~~~---------~~~~iilts~~~p~~~---~~~l~DL~SR 161 (246)
T Consensus 395 ~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyr 474 (606)
T COG3284 395 RRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYR 474 (606)
T ss_pred HHCCCCCCCEECCCCCCHHHHHHHCHHHHHHHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCHHHHHHCCCCHHHHHHH
T ss_conf 01066554101578760898761141899999999986182523588521577999834675799998759714878887
Q ss_pred HHHCCEEEECCCCH-----HHHHHHHHHHHHHCCCCCCHHHHHHH-HHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 52122245078897-----89999999986662897988999999-9406679899999999999999
Q gi|254780567|r 162 LKAATVVKISLPDD-----DFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSLVFAEKLVDKMDNLA 223 (246)
Q Consensus 162 l~~g~~~~I~~pdd-----e~~~~il~k~~~~r~i~l~~~v~~yl-~~r~~Rs~~~l~~~l~~Ld~~s 223 (246)
T Consensus 475 L~~-~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 475 LNA-FVITLPPLRERSDRIPLLDRILKREND-WRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred HCC-EEECCCCHHCCCCCHHHHHHHHHHCCC-CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 447-155068611046657899999987268-775689999999985789982899999999998707