HHsearch alignment for GI: 254780567 and conserved domain: PRK00149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed.
Probab=100.00 E-value=0 Score=332.49 Aligned_cols=216 Identities=19% Similarity=0.220 Sum_probs=188.7
Q ss_pred CCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCC---CCEEEEECCCCCCHHHHHHHHHHHH-----CCCCHHHHHHHH
Q ss_conf 55888776688454165361899999998510167---8849998787778688999999862-----762013567644
Q gi|254780567|r 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSL 100 (246)
Q Consensus 29 ~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~---~~~l~i~G~~GsGKTHLl~a~~~~~-----~~~~~~~~~~~~ 100 (246)
T Consensus 107 ~~~~~Ln~~yTFdnFVvG~sN~lA~aAA~~Va~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F 186 (447)
T PRK00149 107 NFRSNLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKF 186 (447)
T ss_pred CCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHH
T ss_conf 45678885560326222698599999999998376767785589779988788999999999998589972899549999
Q ss_pred HHH---------------HHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 454---------------6666665334332100376---1033545554311234215640354320022345667885
Q gi|254780567|r 101 DSI---------------LIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 (246)
Q Consensus 101 ~~~---------------~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl 162 (246)
T Consensus 187 ~~~~v~al~~~~~~~Fr~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l~~l~~rL~SRf 266 (447)
T PRK00149 187 TNDFVKALRNNAMEEFKEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVITSDRPPKELEGLEDRLRSRF 266 (447)
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHH
T ss_conf 99999998518699999999728854321488860557799999999999998499689957889676565117788676
Q ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 21222450788978999999998666289798899999994066798999999999999999847787889999999867
Q gi|254780567|r 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 163 ~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
T Consensus 267 ~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~l~~~v~~~iA~~~~~nvR~LeGal~~l~a~~~~~~~~i~~~~~~~~l~~~ 346 (447)
T PRK00149 267 EWGLTVDIEPPDLETRVAILQKKAEEEGINLPNEVLEFIAKRIRSNIRELEGALNRLVAYASLTGRPITLELAKEALKDL 346 (447)
T ss_pred HCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 37626510599999999999999997289999899999997126889999999999999999868999999999999987
Q ss_pred HC
Q ss_conf 41
Q gi|254780567|r 243 QQ 244 (246)
Q Consensus 243 ~~ 244 (246)
T Consensus 347 ~~ 348 (447)
T PRK00149 347 LR 348 (447)
T ss_pred HH
T ss_conf 40