HHsearch alignment for GI: 254780567 and conserved domain: PRK00440

>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.66  E-value=3.9e-15  Score=113.06  Aligned_cols=187  Identities=14%  Similarity=0.136  Sum_probs=129.3

Q ss_pred             CCCCEEECCCHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCC-----C--HHHHHHH---H----HHH
Q ss_conf             845416536189999999851016-78849998787778688999999862762-----0--1356764---4----454
Q gi|254780567|r   39 SRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCLANIWSDKSRST-----R--FSNIAKS---L----DSI  103 (246)
Q Consensus        39 ~~dnFiv~~~N~~A~~~i~~~~~~-~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~--~~~~~~~---~----~~~  103 (246)
T Consensus        14 ~l~di~---g~~~~~~~L~~~i~~~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id~vr~~i~~   90 (318)
T PRK00440         14 SLDEVV---GQEEIVERLKSFVKEKNMPHLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGIDVIRNKIKE   90 (318)
T ss_pred             CHHHHC---CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf             899941---96999999999998799866988895998899999999999769864347689516456671789999999


Q ss_pred             -------HHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCH
Q ss_conf             -------666666533433210037610-335455543112342156403543200223456678852122245078897
Q gi|254780567|r  104 -------LIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD  175 (246)
Q Consensus       104 -------~~~~~~~i~iddi~~~~~~ee-~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdd  175 (246)
T Consensus        91 ~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE-~~~~~~~fil~~n~~-~k---ii~~i~SRc~---~i~f~~~~~  162 (318)
T PRK00440         91 FARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQTTRFILSCNYS-SK---IIDPIQSRCA---VFRFSPLPK  162 (318)
T ss_pred             HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCC-CC---CCCCHHHHHE---EEECCCCCH
T ss_conf             997267789973899986855322556788876431-056662588634883-33---7615565510---111578999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             89999999986662897988999999940667989999999999999998477878899999998
Q gi|254780567|r  176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK  240 (246)
Q Consensus       176 e~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~  240 (246)
T Consensus       163 ~~i~~~L~~I~~~E~i~~~~~~l~~i~~~s~gdlR~ain~Lq~---~~~-~~~~it~~~v~~~~~  223 (318)
T PRK00440        163 EAVIERLRYIAKNEGLEITDDALEAIYYVSEGDMRKAINALQA---AAA-TGKEVTEEAVYKITG  223 (318)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH---HHH-CCCCCCHHHHHHHHC
T ss_conf             9999999999998599989999999998649989999999999---997-489878999999976