HHsearch alignment for GI: 254780567 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.66 E-value=3.9e-15 Score=113.06 Aligned_cols=187 Identities=14% Similarity=0.136 Sum_probs=129.3
Q ss_pred CCCCEEECCCHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCC-----C--HHHHHHH---H----HHH
Q ss_conf 845416536189999999851016-78849998787778688999999862762-----0--1356764---4----454
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCLANIWSDKSRST-----R--FSNIAKS---L----DSI 103 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~~-~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~--~~~~~~~---~----~~~ 103 (246)
T Consensus 14 ~l~di~---g~~~~~~~L~~~i~~~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id~vr~~i~~ 90 (318)
T PRK00440 14 SLDEVV---GQEEIVERLKSFVKEKNMPHLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGIDVIRNKIKE 90 (318)
T ss_pred CHHHHC---CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 899941---96999999999998799866988895998899999999999769864347689516456671789999999
Q ss_pred -------HHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCH
Q ss_conf -------666666533433210037610-335455543112342156403543200223456678852122245078897
Q gi|254780567|r 104 -------LIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 (246)
Q Consensus 104 -------~~~~~~~i~iddi~~~~~~ee-~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdd 175 (246)
T Consensus 91 ~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE-~~~~~~~fil~~n~~-~k---ii~~i~SRc~---~i~f~~~~~ 162 (318)
T PRK00440 91 FARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQTTRFILSCNYS-SK---IIDPIQSRCA---VFRFSPLPK 162 (318)
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCC-CC---CCCCHHHHHE---EEECCCCCH
T ss_conf 997267789973899986855322556788876431-056662588634883-33---7615565510---111578999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 89999999986662897988999999940667989999999999999998477878899999998
Q gi|254780567|r 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 176 e~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~ 240 (246)
T Consensus 163 ~~i~~~L~~I~~~E~i~~~~~~l~~i~~~s~gdlR~ain~Lq~---~~~-~~~~it~~~v~~~~~ 223 (318)
T PRK00440 163 EAVIERLRYIAKNEGLEITDDALEAIYYVSEGDMRKAINALQA---AAA-TGKEVTEEAVYKITG 223 (318)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH---HHH-CCCCCCHHHHHHHHC
T ss_conf 9999999999998599989999999998649989999999999---997-489878999999976