HHsearch alignment for GI: 254780567 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=99.40 E-value=3.5e-11 Score=88.67 Aligned_cols=175 Identities=16% Similarity=0.248 Sum_probs=117.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH----------------HHHHHHHHHHHHHHHHCCCCCC---
Q ss_conf 788499987877786889999998627620135676444----------------5466666653343321003761---
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD----------------SILIDTRKPVLLEDIDLLDFND--- 123 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~iddi~~~~~~e--- 123 (246)
T Consensus 165 pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk~vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~ 244 (390)
T PRK03992 165 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDS 244 (390)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCC
T ss_conf 99727868989997899999999874888799667997524541799999999999997099089714325663356778
Q ss_pred ------H------HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH-HHHHHCCEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf ------0------33545554311234215640354320022345667-8852122245078897899999999866628
Q gi|254780567|r 124 ------T------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 (246)
Q Consensus 124 ------e------~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~-SRl~~g~~~~I~~pdde~~~~il~k~~~~r~ 190 (246)
T Consensus 245 ~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd~LDpAl--lRpGRFD--r~I~iplPd~~~R~~Ilki~~~--~ 318 (390)
T PRK03992 245 GTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRPDILDPAL--LRPGRFD--RIIEVPLPDEEGRLEILKIHTR--K 318 (390)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCCHHH--HCCCCCC--EEEEECCCCHHHHHHHHHHHHC--C
T ss_conf 88620889999999999744877778827996069810059777--5477652--3887089499999999999847--9
Q ss_pred CCCCHHH-HHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHH
Q ss_conf 9798899-999994066-7989999999999999998477-878899999998674
Q gi|254780567|r 191 IFIDKKL-AAYIVQRME-RSLVFAEKLVDKMDNLALSRGM-GITRSLAAEVLKETQ 243 (246)
Q Consensus 191 i~l~~~v-~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~kr-~ITi~lvk~vL~~~~ 243 (246)
T Consensus 319 ~~l~~dvdl~~lA~~T~G~SGADI~~lc~EA~m~Air~~r~~i~~~Df~~Ai~kv~ 374 (390)
T PRK03992 319 MNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVM 374 (390)
T ss_pred CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99998889999997687998999999999999999985898608999999999996