HHsearch alignment for GI: 254780567 and conserved domain: PRK05201
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional.
Probab=96.95 E-value=0.0016 Score=41.53 Aligned_cols=130 Identities=13% Similarity=0.246 Sum_probs=78.2
Q ss_pred HHHHHHHHHCCCCC-------------CHHHHHHHHHHHCCC-------CCEEEEECCC-----CCCHHHHHHHHHHHHH
Q ss_conf 65334332100376-------------103354555431123-------4215640354-----3200223456678852
Q gi|254780567|r 109 KPVLLEDIDLLDFN-------------DTQLFHIINSIHQYD-------SSLLMTARTF-----PVSWGVCLPDLCSRLK 163 (246)
Q Consensus 109 ~~i~iddi~~~~~~-------------ee~lf~l~n~~~~~~-------~~iilts~~~-----p~~~~~~l~DL~SRl~ 163 (246)
T Consensus 250 GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G~V~TdhILFIasGAFh~sKPSD---LIPEl~GRlP 326 (442)
T PRK05201 250 GIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVAKPSD---LIPELQGRFP 326 (442)
T ss_pred CCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCH---HHHHHCCCCE
T ss_conf 7045114656530357889897733078887887538855567776025503455045001478202---2498717550
Q ss_pred HCCEEEECCCCHHHHHHHHHH-----------HHHHCCCC--CCHHHHHHHHHCCC---C-----CHHHHHHHHHHHH-H
Q ss_conf 122245078897899999999-----------86662897--98899999994066---7-----9899999999999-9
Q gi|254780567|r 164 AATVVKISLPDDDFLEKVIVK-----------MFADRQIF--IDKKLAAYIVQRME---R-----SLVFAEKLVDKMD-N 221 (246)
Q Consensus 164 ~g~~~~I~~pdde~~~~il~k-----------~~~~r~i~--l~~~v~~yl~~r~~---R-----s~~~l~~~l~~Ld-~ 221 (246)
T Consensus 327 --v~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~tI~E~vl~d 404 (442)
T PRK05201 327 --IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 404 (442)
T ss_pred --EEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf --588824499999999967861578999999986249679984799999999999851447667737889999999898
Q ss_pred HHHH------HCCCCCHHHHHHHHHHHH
Q ss_conf 9998------477878899999998674
Q gi|254780567|r 222 LALS------RGMGITRSLAAEVLKETQ 243 (246)
Q Consensus 222 ~sl~------~kr~ITi~lvk~vL~~~~ 243 (246)
T Consensus 405 ~~Fe~p~~~~~~v~I~~~~V~~~l~~i~ 432 (442)
T PRK05201 405 ISFEAPDRSGEKITIDAAYVDEKLGDLV 432 (442)
T ss_pred HCCCCCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 6146889999779988999999998876