HHsearch alignment for GI: 254780567 and conserved domain: PRK05648
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=98.94 E-value=8.6e-08 Score=67.84 Aligned_cols=186 Identities=12% Similarity=0.112 Sum_probs=118.6
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCH----------HHHHHH-------
Q ss_conf 84541653618999999985-10167-884999878777868899999986276201----------356764-------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWP-SRVVILVGPSGSGKSCLANIWSDKSRSTRF----------SNIAKS------- 99 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~----------~~~~~~------- 99 (246)
T Consensus 14 ~f~~~-~gq--~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~~~~~d~ 90 (705)
T PRK05648 14 SFREM-VGQ--THVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDEGRFVDL 90 (705)
T ss_pred CHHHH-CCH--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 57663-281--999999999997098630465007898889899999999867789998897877600466624897763
Q ss_pred ------------HHHH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCC-CCEEEEECCCCCCHHH
Q ss_conf ------------4454---------6666665334332100376103354555431----123-4215640354320022
Q gi|254780567|r 100 ------------LDSI---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIH----QYD-SSLLMTARTFPVSWGV 153 (246)
Q Consensus 100 ------------~~~~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~----~~~-~~iilts~~~p~~~~~ 153 (246)
T Consensus 91 ~e~d~as~~~v~~~r~~~~~~~~~p~~~~~kv~~idevhmls~------~~fnallktleepp~~v~f~~att~~~k~p- 163 (705)
T PRK05648 91 IEVDAASRTKVEDTRELLDNVQYAPTRGRYKVYLIDEVHMLSS------HSFNALLKTLEEPPPHVKFLLATTDPQKLP- 163 (705)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCH------HHHHHHHHHCCCCCCCEEEEEECCCHHHCC-
T ss_conf 4451554478899999998555177677457999842654179------999999874047975459998428735375-
Q ss_pred HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 34566788521222450788978999999998666289798899999994066798999999999999999847787889
Q gi|254780567|r 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 (246)
Q Consensus 154 ~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~ 233 (246)
T Consensus 164 -----~t~~src~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~dq~--~~~-~~~~~~~~ 235 (705)
T PRK05648 164 -----VTILSRCLQFSLKNMSPERVVEHLSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLTDQA--IAF-GEGKVLAA 235 (705)
T ss_pred -----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHC-CCCCCCHH
T ss_conf -----8999766430236899999999999999975997789999999997489677799999999--860-68840799
Q ss_pred HHHHHHHHH
Q ss_conf 999999867
Q gi|254780567|r 234 LAAEVLKET 242 (246)
Q Consensus 234 lvk~vL~~~ 242 (246)
T Consensus 236 ~v~~mlg~~ 244 (705)
T PRK05648 236 DVRAMLGTL 244 (705)
T ss_pred HHHHHHCCC
T ss_conf 999985888