HHsearch alignment for GI: 254780567 and conserved domain: PRK06526
>PRK06526 transposase; Provisional.
Probab=99.14 E-value=3.1e-11 Score=89.04 Aligned_cols=137 Identities=17% Similarity=0.285 Sum_probs=82.9
Q ss_pred CCCCCEEECCC---HHHHHHHHH--HHHCCCCCEEEEECCCCCCHHHHHHHHHHHH-----CCCCHHHHHHHH-------
Q ss_conf 88454165361---899999998--5101678849998787778688999999862-----762013567644-------
Q gi|254780567|r 38 ISRDDLLVHSA---IEQAVRLID--SWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSL------- 100 (246)
Q Consensus 38 ~~~dnFiv~~~---N~~A~~~i~--~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~-----~~~~~~~~~~~~------- 100 (246)
T Consensus 68 ktLe~fd~~~~~~l~~~~i~~La~~~fi~~-~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~ 146 (254)
T PRK06526 68 KSLEEFDFDHQRSLKRDTIAHLGTLDFVTG-KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH 146 (254)
T ss_pred CCHHHCCCCCCCCCCHHHHHHHHCCCHHHC-CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 898767865678989999999863717765-8878998999986899999999999986996799877999999999885
Q ss_pred ------HHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH------HHHHH-HH
Q ss_conf ------45466666653343321003761---0335455543112342156403543200223456------67885-21
Q gi|254780567|r 101 ------DSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------LCSRL-KA 164 (246)
Q Consensus 101 ------~~~~~~~~~~i~iddi~~~~~~e---e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~D------L~SRl-~~ 164 (246)
T Consensus 147 ~g~~~~~~~~l~~~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye~-~S~IiTSn~~~~~W~~~f~D~~la~AilDRL~H~ 225 (254)
T PRK06526 147 AGRLQDELVKLGRIPLLIVDEVGYIPFEAEAANLFFQLVSSRYER-ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHH 225 (254)
T ss_pred CCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 580999999851368776502136447889999999999999745-8867665898668888648689999999986256
Q ss_pred CCEEEECCCCHH
Q ss_conf 222450788978
Q gi|254780567|r 165 ATVVKISLPDDD 176 (246)
Q Consensus 165 g~~~~I~~pdde 176 (246)
T Consensus 226 a~~i~~~G~SyR 237 (254)
T PRK06526 226 AEVISLKGDSYR 237 (254)
T ss_pred EEEEEECCCCCC
T ss_conf 289984388665