HHsearch alignment for GI: 254780567 and conserved domain: PRK06585
>PRK06585 holA DNA polymerase III subunit delta; Reviewed.
Probab=97.59 E-value=0.0064 Score=37.87 Aligned_cols=184 Identities=16% Similarity=0.150 Sum_probs=103.1
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--------CCHHHHHHHHHHH----------HHHHHHHHHHHHH
Q ss_conf 998510167884999878777868899999986276--------2013567644454----------6666665334332
Q gi|254780567|r 55 LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--------TRFSNIAKSLDSI----------LIDTRKPVLLEDI 116 (246)
Q Consensus 55 ~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~--------~~~~~~~~~~~~~----------~~~~~~~i~iddi 116 (246)
T Consensus 12 f~~~-p~~~~~~~LlyG~d~glv~e~~~~l~~~~~~~~~~~f~~~~l~~~el~~d~~~l~de~~t~slF~~~rlI~i~~~ 90 (343)
T PRK06585 12 FLAR-PDGKIRAVLLYGPDRGLVRERARRLAKSVVDDPDDPFAVVRLDGDELDADPARLEDEANTISLFGGRRLIWVRAG 90 (343)
T ss_pred HHHC-CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 9819-864765899963876479999999999725566787415774799883399999999847687689848997268
Q ss_pred HCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 10037610335455543112342156403543200223456678852122245078897899999999866628979889
Q gi|254780567|r 117 DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 (246)
Q Consensus 117 ~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~ 196 (246)
T Consensus 91 ~d--~~~~~l~~~l~~-~~~~~~lIi~a~~L~k~s--kLrk~~e~~~~~~~i~cY~d~~~~l~~~i~~~l~~~g~~i~~~ 165 (343)
T PRK06585 91 GK--SLAAALKALLAE-PPGDAFIVIEAGDLKKGS--SLRKLFETAASAAAIPCYADDERDLARLIDDELAKAGLRITPD 165 (343)
T ss_pred CH--HHHHHHHHHHHC-CCCCEEEEEECCCCCCCC--HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 72--569999999817-899828999738977311--8999998647869995006998899999999999829997799
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 9999994066798999999999999999847787889999999867418
Q gi|254780567|r 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 (246)
Q Consensus 197 v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~~~~ 245 (246)
T Consensus 166 a~~~L~~~~g~d~~~~~~EleKL~ly~-~~~~~It~edv~~~v~~~~~~ 213 (343)
T PRK06585 166 ARAYLVALLGGDRLASRNEIEKLALYA-HGKGEITLDDVRAVVGDASAL 213 (343)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCC
T ss_conf 999999873427999999999999984-899978999999986864102