HHsearch alignment for GI: 254780567 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=100.00 E-value=0 Score=363.73 Aligned_cols=214 Identities=20% Similarity=0.253 Sum_probs=191.6
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH-----CCCCHHHHHH-HH
Q ss_conf 41558887766884541653618999999985101678849998787778688999999862-----7620135676-44
Q gi|254780567|r 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAK-SL 100 (246)
Q Consensus 27 Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~-----~~~~~~~~~~-~~ 100 (246)
T Consensus 2 QL~L~~~~~~~~tfdnF~~~~n~~~~~~l~~~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~ 81 (229)
T PRK06893 2 QLPLPIHQIDDETLDNFYSDNNLLLLDSLRKNFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF 81 (229)
T ss_pred CCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHC
T ss_conf 71567999986654315468749999999975502469879998999998899999999999971898599973775640
Q ss_pred H---HHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEE-EECCCCCCHHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 4---546666665334332100376---10335455543112342156-4035432002234566788521222450788
Q gi|254780567|r 101 D---SILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 (246)
Q Consensus 101 ~---~~~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iil-ts~~~p~~~~~~l~DL~SRl~~g~~~~I~~p 173 (246)
T Consensus 82 ~~~~l~~l~~~d~l~iDDi~~i~g~~~~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~~~~~~i~~~ 161 (229)
T PRK06893 82 SPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKESGKTLLLISANQSPHALQIKLPDLASRLTWGEIYQLNDL 161 (229)
T ss_pred CHHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCHHHHHHHHHHCCEEEEECCC
T ss_conf 69999876547979996723424883899999999999997599179985798833221002679999968836996677
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9789999999986662897988999999940667989999999999999998477878899999998
Q gi|254780567|r 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 174 dde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~ 240 (246)
T Consensus 162 dd~~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~iTiplvkevL~ 228 (229)
T PRK06893 162 TDEQKIEVLQRNAYQRGIELSDETANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 7579999999999964999998999999998347899999999999999998089999999999868