HHsearch alignment for GI: 254780567 and conserved domain: PRK07261
>PRK07261 topology modulation protein; Provisional.
Probab=96.48 E-value=0.025 Score=34.16 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=64.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHCCCCCEEE
Q ss_conf 99987877786889999998627620135676444546666665334332100376----10335455543112342156
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN----DTQLFHIINSIHQYDSSLLM 142 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~----ee~lf~l~n~~~~~~~~iil 142 (246)
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~------------------~LD~l~w~p~w~~~~~~e~~~~~~~~~~~~-~WIi 63 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVL------------------HLDQLHFSSNWQERDDDDMIADISNFLLKQ-DWII 63 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE------------------EECCEEECCCCEECCHHHHHHHHHHHHHCC-CEEE
T ss_conf 999889998689999999998797979------------------702278889998888999999999998489-8799
Q ss_pred EECCCCCCHHHHHHHHHHHH-HHCCEEEECCCCHHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHC
Q ss_conf 40354320022345667885-212224507889789999999986662897-----------988999999940
Q gi|254780567|r 143 TARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIF-----------IDKKLAAYIVQR 204 (246)
Q Consensus 143 ts~~~p~~~~~~l~DL~SRl-~~g~~~~I~~pdde~~~~il~k~~~~r~i~-----------l~~~v~~yl~~r 204 (246)
T Consensus 64 DGny~~~~~~-------~rl~~aD~iI~Ld~p~~~~l~rvikR~l~~~~~~r~~m~~g~~E~~~~~fl~wi~~~ 130 (171)
T PRK07261 64 EGNYSNCLYE-------ERMAEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRPSMAENCPEKFDVEFVKWILLD 130 (171)
T ss_pred ECCCCCHHHH-------HHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 4785124777-------679779999998584999999999999998277587657899341029999999734