HHsearch alignment for GI: 254780567 and conserved domain: PRK07399
>PRK07399 DNA polymerase III subunit delta'; Validated.
Probab=98.29 E-value=1.1e-05 Score=54.81 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=96.7
Q ss_pred CCCEEECCCHHHHHHHHHHHHCC-C-CCEEEEECCCCCCHHHHHHHHHHHHCCC--------------------CHHHHH
Q ss_conf 45416536189999999851016-7-8849998787778688999999862762--------------------013567
Q gi|254780567|r 40 RDDLLVHSAIEQAVRLIDSWPSW-P-SRVVILVGPSGSGKSCLANIWSDKSRST--------------------RFSNIA 97 (246)
Q Consensus 40 ~dnFiv~~~N~~A~~~i~~~~~~-~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~--------------------~~~~~~ 97 (246)
T Consensus 3 F~~ii-Gq--~~~~~~L~~ai~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~P~~ 79 (314)
T PRK07399 3 FANLI-GQ--PLAIELLTAAIEQNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred CCCCC-CC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECCC
T ss_conf 33125-94--9999999999985996744877899983299999999999857899997665587518999778860562
Q ss_pred --------------------------HHHHH---------HHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCEE
Q ss_conf --------------------------64445---------46666665334332100376-1033545554311234215
Q gi|254780567|r 98 --------------------------KSLDS---------ILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLL 141 (246)
Q Consensus 98 --------------------------~~~~~---------~~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~ii 141 (246)
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEE-P~~~-~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNG-TLI 157 (314)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCC-CCCC-EEE
T ss_conf 00345455778987653026877787999999999973188568847999889787199999999986147-8785-699
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 64035432002234566788521222450788978999999998666289798899999994066798999999999999
Q gi|254780567|r 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 (246)
Q Consensus 142 lts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~ 221 (246)
T Consensus 158 Lit~-~~---~~lLpTI~SRCQ---~i~F~~l~~~~i~~~L~~~~~~~~~~~~~~~l~~~A---~GspG~a~~~~~~~~~ 227 (314)
T PRK07399 158 LIAP-SP---ESLLPTIVSRCQ---IIPFYRLSDEQLEQVLKRLGDNINEILDHPELLALA---QGSPGAAIANIEQLQS 227 (314)
T ss_pred EEEC-CH---HHCCHHHHCCCE---EEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH---CCCHHHHHHHHHHHHH
T ss_conf 9979-93---649146641875---633899899999999997166433102789999881---7997999999999874
Q ss_pred H
Q ss_conf 9
Q gi|254780567|r 222 L 222 (246)
Q Consensus 222 ~ 222 (246)
T Consensus 228 i 228 (314)
T PRK07399 228 I 228 (314)
T ss_pred C
T ss_conf 8