HHsearch alignment for GI: 254780567 and conserved domain: PRK08118
>PRK08118 topology modulation protein; Reviewed.
Probab=96.90 E-value=0.035 Score=33.28 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=70.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHCCCCCE
Q ss_conf 8499987877786889999998627620135676444546666665334332100376----103354555431123421
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN----DTQLFHIINSIHQYDSSL 140 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~----ee~lf~l~n~~~~~~~~i 140 (246)
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~~ip~~------------------~LD~l~w~~~w~~~~~~e~~~~~~~~~~~-~~W 62 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVH------------------HLDALFWKPNWEGVPKEEQRTVQNELVKE-DEW 62 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEE------------------ECCCEEECCCCCCCCHHHHHHHHHHHHHC-CCE
T ss_conf 67999889998799999999998896979------------------64434766899468889999999999838-987
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHCCCCCH
Q ss_conf 5640354320022345667885212224507889789999999986662897-----------98899999994066798
Q gi|254780567|r 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF-----------IDKKLAAYIVQRMERSL 209 (246)
Q Consensus 141 ilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~-----------l~~~v~~yl~~r~~Rs~ 209 (246)
T Consensus 63 IidGny~-~~~~~r~~------~aD~iI~Ld~p~~~~~~r~~kR~~~~~~~~r~d~~~g~~E~~~~~fl~wi~~~~~~~r 135 (167)
T PRK08118 63 IIDGNYG-GTMDIRLN------AADTIIFLDIPRTICLYRAFKRRVQYRGKTRPDMGEGCPEKFDLQFFKWIWEYPKTKR 135 (167)
T ss_pred EEECCCH-HHHHHHHH------HCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCC
T ss_conf 9947717-79987797------6999999859899999999999999817757656899936250999999985840101
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780567|r 210 VFAEKLVD 217 (246)
Q Consensus 210 ~~l~~~l~ 217 (246)
T Consensus 136 ~~~~~~l~ 143 (167)
T PRK08118 136 PSILKRLN 143 (167)
T ss_pred HHHHHHHH
T ss_conf 99999998