HHsearch alignment for GI: 254780567 and conserved domain: PRK08118

>PRK08118 topology modulation protein; Reviewed.
Probab=96.90  E-value=0.035  Score=33.28  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=70.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHCCCCCE
Q ss_conf             8499987877786889999998627620135676444546666665334332100376----103354555431123421
Q gi|254780567|r   65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN----DTQLFHIINSIHQYDSSL  140 (246)
Q Consensus        65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~----ee~lf~l~n~~~~~~~~i  140 (246)
T Consensus         2 ~rI~IiG~~GsGKSTlAr~L~~~~~ip~~------------------~LD~l~w~~~w~~~~~~e~~~~~~~~~~~-~~W   62 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVH------------------HLDALFWKPNWEGVPKEEQRTVQNELVKE-DEW   62 (167)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEE------------------ECCCEEECCCCCCCCHHHHHHHHHHHHHC-CCE
T ss_conf             67999889998799999999998896979------------------64434766899468889999999999838-987


Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHCCCCCH
Q ss_conf             5640354320022345667885212224507889789999999986662897-----------98899999994066798
Q gi|254780567|r  141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF-----------IDKKLAAYIVQRMERSL  209 (246)
Q Consensus       141 ilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~-----------l~~~v~~yl~~r~~Rs~  209 (246)
T Consensus        63 IidGny~-~~~~~r~~------~aD~iI~Ld~p~~~~~~r~~kR~~~~~~~~r~d~~~g~~E~~~~~fl~wi~~~~~~~r  135 (167)
T PRK08118         63 IIDGNYG-GTMDIRLN------AADTIIFLDIPRTICLYRAFKRRVQYRGKTRPDMGEGCPEKFDLQFFKWIWEYPKTKR  135 (167)
T ss_pred             EEECCCH-HHHHHHHH------HCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCC
T ss_conf             9947717-79987797------6999999859899999999999999817757656899936250999999985840101


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780567|r  210 VFAEKLVD  217 (246)
Q Consensus       210 ~~l~~~l~  217 (246)
T Consensus       136 ~~~~~~l~  143 (167)
T PRK08118        136 PSILKRLN  143 (167)
T ss_pred             HHHHHHHH
T ss_conf             99999998