HHsearch alignment for GI: 254780567 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=98.56 E-value=1.4e-06 Score=60.34 Aligned_cols=185 Identities=20% Similarity=0.222 Sum_probs=103.6
Q ss_pred CEEECCCHHHHHHHH-HHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCC-----C----H----H---H--HH----
Q ss_conf 416536189999999-85101678-849998787778688999999862762-----0----1----3---5--67----
Q gi|254780567|r 42 DLLVHSAIEQAVRLI-DSWPSWPS-RVVILVGPSGSGKSCLANIWSDKSRST-----R----F----S---N--IA---- 97 (246)
Q Consensus 42 nFiv~~~N~~A~~~i-~~~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~----~----~---~--~~---- 97 (246)
T Consensus 23 ~~liGq~--~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~h 100 (352)
T PRK09112 23 NRLFGHE--EARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAH 100 (352)
T ss_pred HHHCCHH--HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 4627869--99999999998499652465358998089999999999986699866686556788878778999974899
Q ss_pred HHH-------HH-----------H-------------HHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 644-------45-----------4-------------6666665334332100376-10335455543112342156403
Q gi|254780567|r 98 KSL-------DS-----------I-------------LIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTAR 145 (246)
Q Consensus 98 ~~~-------~~-----------~-------------~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~iilts~ 145 (246)
T Consensus 101 pdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~-~~fiLit- 178 (352)
T PRK09112 101 PNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR-ALFILIS- 178 (352)
T ss_pred CCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCC-EEEEEEE-
T ss_conf 99565534322021454335777999999998454886688069998187874699999999985348987-4899886-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH--HHH--
Q ss_conf 5432002234566788521222450788978999999998666289798899999994066798999999999--999--
Q gi|254780567|r 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK--MDN-- 221 (246)
Q Consensus 146 ~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~--Ld~-- 221 (246)
T Consensus 179 ~~~~~---ll~TI~SRCq---~~~f~pL~~~di~~~L~~i~~~~~~~-~~~~~~~l~~~a~GS~~~Al~L~~~~gl~i~~ 251 (352)
T PRK09112 179 HSSGR---LLPTIRSRCQ---PISLKPLDDDELKKALSHLGSKQGIS-AGEETEALLQRSEGSVRKALLLLNYGGLEIID 251 (352)
T ss_pred CCHHH---CHHHHHHHCC---CCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHH
T ss_conf 99777---7689997433---21488939899999999875126899-87999999987089988999874487799999
Q ss_pred --HHHHHCCCCCHHHHHH
Q ss_conf --9998477878899999
Q gi|254780567|r 222 --LALSRGMGITRSLAAE 237 (246)
Q Consensus 222 --~sl~~kr~ITi~lvk~ 237 (246)
T Consensus 252 ~~~~ll~~p~~d~~~~~~ 269 (352)
T PRK09112 252 TVDQLLAGSGFDLPKAHA 269 (352)
T ss_pred HHHHHHHCCCCCHHHHHH
T ss_conf 999998089999899999